• 한국미생물학회:학술대회논문집
• /
• 한국미생물학회 1991년도 춘계학술발표대회 논문집
• /
• pp.1-6
• /
• 1991

• 한국식물학회:학술대회논문집
• /
• 한국식물학회 1999년도 춘계학술발표대회:발표논문요지록
• /
• pp.1-1
• /
• 1999

• 한국어업기술학회:학술대회논문집
• /
• 한국어업기술학회 1998년도 수산관련공동학술대회발표요지집
• /
• pp.67.1-72
• /
• 1998

• ALGAE
• /
• 제21권2호
• /
• pp.175-183
• /
• 2006

Recent phylogenetic studies of scytosiphonacean brown algae show many conflicts with current classification. In order to clearly define the phylogenetic relationships of the family, we newly sequenced the photosystem I coding psaA gene (1488 base pairs) from 13 taxa (15 samples), of the family, and, for comparison, rbcL from four taxa. The psaA region has more informative sites (17.9%) than the rbcL (13.1%) and the number of nodes supported by over 50% bootstrap values is more in the psaA phylogeny (53 /57 nodes; 93%) than in the rbcL (47/63 nodes; 74.6%). The psaA phylogenies are basically congruent with the rbcL trees, recognizing two major groups in the monophyletic Scytosiphonaceae. The first group included Myelophycus, Petalonia, Scytosiphon, and elongate sack-shaped species of Colpomenia, primarily cold temperate elements with unilocular zoidangia on sporophytes. The second group, although not resolved, consisted of Hydroclathrus, Chnoospora, Rosenvingea, and ball-shaped Colpomenia, primarily warm-temperate taxa with both unilocular and plurilocular zoidangia on sporophytes. Chnoospora is not monophyletic, as was previously shown the paraphyly of Colpomenia, Petalonia, and Scytosiphon. Hydroclathrus clathratus from Korea and Japan was not monophyletic. Our studies show that gametophytic characters are the main source of conflict for the present taxonomy of the family. The psaA region is a useful tool for resolution of phylogenetic relationships within the Scytosiphonaceae.

• 대한수학회논문집
• /
• 제25권1호
• /
• pp.149-160
• /
• 2010

Among the distance based algorithms in phylogenetic tree reconstruction, the neighbor-joining algorithm has been a widely used and effective method. We propose a new algorithm which counts the number of consistent quartets for cherry picking with tie breaking. We show that the success rate of the new algorithm is almost equal to that of neighbor-joining. This gives an explanation of the qualitative nature of neighbor-joining and that of dissimilarity maps from DNA sequence data. Moreover, the new algorithm always reconstructs correct trees from quartet consistent dissimilarity maps.

• 식물분류학회지
• /
• 제51권3호
• /
• pp.337-344
• /
• 2021

The chloroplast genome of Limonium tetragonum (Thunb.) Bullock, a halophytic species, was sequenced to understand genetic differences based on its geographical distribution. The cp genome of L. tetragonum was 154,689 bp long (GC ratio is 37.0%) and has four subregions: 84,572 bp of large single-copy (35.3%) and 12,813 bp of small single-copy (31.5%) regions were separated by 28,562 bp of inverted repeat (40.9%) regions. It contained 128 genes (83 protein-coding genes, eight rRNAs, and 37 tRNAs). Thirty-five single-nucleotide polymorphisms and 33 INDEL regions (88 bp in length) were identified. Maximum-likelihood and Bayesian inference phylogenetic trees showed that L. tetragonum formed a sister group with L. aureum, which is incongruent with certain previous studies, including a phylogenetic analysis.

• 식물분류학회지
• /
• 제52권4호
• /
• pp.262-268
• /
• 2022

The complete chloroplast genome (cp genome) sequence of Clematis calcicola J. S. Kim (Ranunculaceae) is 159,655 bp in length. It consists of large (79,451 bp) and small (18,126 bp) single-copy regions and a pair of identical inverted repeats (31,039 bp). The genome contains 92 protein-coding genes, 36 transfer RNA genes, eight ribosomal RNA genes, and two pseudogenes. A phylogenetic analysis based on the cp genome of 19 taxa showed high similarity between our cp genome and data published for C. calcicola, which is recognized as a species endemic to the Korean Peninsula. The complete cp genome sequence of C. calcicola reported here provides important information for future phylogenetic and evolutionary studies of Ranunculaceae.

• 한국자원식물학회:학술대회논문집
• /
• 한국자원식물학회 2022년도 추계학술대회
• /
• pp.69-69
• /
• 2022

Commelinaceae (Commelinales), consist of three subfamiles and 40 genera, are distributed in the Old and New world, except Europe. This family is commonly known as dayflower and spiderwort due to their short bloom time and a viscous stem secretion. Although, several morphological and molecular analysis were conducted, the relationships among the genera are still ambiguous. The rapid advances in next-generation sequencing (NGS) enable us to do genomic research widely. Here, we assembled 12 new plastomes of Commelinaceae including Cartonematoideae and compared with previously published data. We identified pseudogened accD and rpoA in Commelinoideae taxa. Phylogenetic analysis inferred from 78 protein-coding genes showed that Rhopalephora scaberrima was nested within Aneilema. Also, there is a need to revise the subtribal relationships in Tradescantieae. This study will contribute to define the genome structures, phylogenetic and biogeographic studies of Commelinaceae.

• 환경생물
• /
• 제23권4호
• /
• pp.335-342
• /
• 2005

We cloned seven genes encoding chitin synthases (CHSs) by PCR amplification from genomic DNAs of four strains of the genus Sporobolomyces and of Bensingtonia subrosea using degenerated primers based on conserved regions of the CHS genes. Though amino acid sequences of these genes were shown similar as 176 to 189 amino acids except SgCHS2, DNA sequences were different in size, which was due to various introns present in seven fragments. Alignment and phylogenetic analysis of their deduced amino acid sequences together with the reported CHS genes of basidiomycetes separated the sequences into classes I, II and III. This analysis also permitted the classification of isolated CHSs; SgCHS1 belongs to class I, BsCHS1, SaCHS1, SgCHS2, SpgCHS1, and SsCHS1 belong to class II, and BsCHS2 belongs to class III. The deduced amino acid sequences involving in class II that were discovered from five strains were also compared with those of other basidiomycetes by CLUSTAL X program. The bootstrap analysis and phylogenetic tree by neighbor-joining method revealed the taxonomic and evolutionary position for four strains of the genus Sporobolomyces and for Bensingtonia subrosea which agreed with the previous classification. The results clearly showed that CHS fragments could be used as a valuable key for the molecular taxonomic and phylogenetic studies of basidiomycetes.

• Asian-Australasian Journal of Animal Sciences
• /
• 제26권9호
• /
• pp.1229-1236
• /
• 2013

India possesses a total buffalo population of 105 million out of which 26.1% inhabit Uttar Pradesh. The buffalo of Uttar Pradesh are described as nondescript or local buffaloes. Currently, there is no report about the genetic diversity, phylogenetic relationship and matrilineal genetic structure of these buffaloes. To determine the origin and genetic diversity of UP buffaloes, we sequenced and analysed the mitochondrial DNA D-loop sequences in 259 samples from entire Uttar Pradesh. One hundred nine haplotypes were identified in UP buffaloes that were defined by 96 polymorphic sites. We implemented neutrality tests to assess signatures of recent historical demographic events like Tajima's D test and Fu's Fs test. The phylogenetic studies revealed that there was no geographic differentiation and UP buffaloes had a single maternal lineage while buffaloes of Eastern UP were distinctive from rest of the UP buffaloes.