• The Korean Journal of Mycology
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• v.48 no.1
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• pp.63-67
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• 2020

Tar spots have been observed on Ilex cornuta in Korea since 2015. Based on morphological and molecular analyses, the fungus responsible was determined to be a Rhytisma species, with characteristics similar to R. ilicis-latifoliae observed on Ilex latifolia from Japan. Herein, we document the first report of Rhytisma sp. on I. cornuta.

• Journal of Microbiology and Biotechnology
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• v.20 no.3
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• pp.501-505
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• 2010

1-Acetyl-$\beta$-carboline was isolated as an anti-MRSA agent from the fermentation broth of a marine actinomycete isolated from marine sediment. The producing strain was identified to be Streptomyces sp. by phylogenetic analysis of the 16S rRNA gene sequence. The anti-MRSA agent was isolated by bioactivity-guided fractionation of the culture extract by solvent partitioning, ODS open flash chromatography, and purification with a reversed-phase HPLC. Its structure was elucidated by extensive 2D NMR and mass spectral analyses. Combination of 1-acetyl-$\beta$-carboline with ampicillin exhibited synergistic antibacterial activity against MRSA.

• Natural Product Sciences
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• v.21 no.4
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• pp.261-267
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• 2015

Compared to their terrestrial and marine counterparts, little is known about the capacity of freshwater-derived actinomycete bacteria to produce novel secondary metabolites. In the current study, we highlight the disparities that exist between cultivation-independent and -dependent analyses of actinomycete communities from four locations in Lake Michigan sediment. Furthermore, through phylogenetic analysis of strains isolated from these locations, we identified a Streptomyces sp., strain B025, as being distinct from other Streptomyces spp. isolated from sediment. Upon fermentation this strain produced a rare class of eight-membered lactone secondary metabolites, which have been for their antitumor properties. We used spectroscopic and chemical derivitization techniques to characterize octalactin B (1) in addition to its corresponding novel, unnatural degradation product (2).

• Journal of Microbiology
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• v.41 no.2
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• pp.83-88
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• 2003

The taxonomic position of actinomycete strain SCNU5$\^$T/, isolated from extensive foam in the aeration basin of an activated sludge process, was clarified by phenotypic, chemotaxonomic and phylogenetic analyses. The strain possesses wall chemotype IV, MK-9(H$\^$0/), as the major menaquinone, and contains saturated, monounsaturated and 10-methyl branched fatty acids. The G+C content of its DNA is 68.1 mol%. Phenotypic data and DNA relatedness to known species indicate that the strain SCNU5$\^$T/ represents a new species within the genus Tsukamurella, for which we propose the name Tsukamurella sunchonensis SP. NOV. The type Strain Of T. sunchonensis is SCNU5$\^$T/ (=KCTC 9827$\^$T/).

• Journal of Species Research
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• v.9 no.3
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• pp.273-279
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• 2020

We describe a newly recorded brittle star to South Korea, Amphiura (Amphiura) digitula (H.L. Clark, 1911), that was collected from Geoje Island, at a depth of 47 m. The species is characterized by a small disk, covered by numerous fine scales, small radial shields that are wider than long, a small stumpy hook at the distal end of the radial shield, two tooth papilla, two adoral shield spines, 2nd adoral shield spine longer than other, tapered dramatically toward dull tip, five arms with four proximal arm spines, and two tentacle scales. We also obtained a 657 bp sequence from COI gene and the amplified sequence matched the general DNA barcoding region. The NJ and ML phylogenetic analyses revealed A. (A.) digitula as monophyletic in the Amphiura clade. This species is clearly distinguished from other Amphiura species by morphological characteristics and the mitochondrial COI sequence, and thus represents the sixth Amphiura species reported to occur in Korea.

• Journal of Species Research
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• v.9 no.3
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• pp.181-190
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• 2020

Monoraphidium subclavatum (FBCC-A409) of this study clustered in the same clade as Messastrum gracile strains in the 18S rDNA phylogeny. Compared to Messastrum gracile, Monoraphidium subclavatum did not form a colony, and the curvature of the cell was slightly curved or slightly crescent-shaped. This result means that the genus Monoraphidium is still based on the morphospecies concept, and was not monophyletic and not distinguishable as a separate genus. Two Stichococcus-like strains of this study (NIBRCL0000114567, NIBRCL0000114571) belong to Deuterostichococcus epilithicus and Pseudostichococcus monallantoides respectively in phylogenetic analysis using 18S rDNA sequences. These two species are consistent with recent research in the morphology and the genetic analyses using 18S and ITS rDNA sequences. We reported M. subclavatum, D. epilithicus, and P. monallantoides as newly recorded species in Korea.

• Mycobiology
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• v.39 no.4
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• pp.266-271
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• 2011

Species of Phoma and its allies were isolated during a survey on the diversity of endophytic fungi associated with pine trees in Korea. Based on the phylogenetic analyses of internal transcribed spacer and ${\beta}$-tubulin gene sequences, two Phoma-like species from the needles of Pinus koraiensis were identified as Peyronellaea calorpreferens and P. glomerata. They were also morphologically identified based on the previous descriptions. Here, we report P. calorpreferens and P. glomerata being present in Korea as endophytic fungi in Pinus koraiensis.

• Mycobiology
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• v.42 no.4
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• pp.317-321
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• 2014

Fruiting bodies similar to those of the ascomycete fungi Podostroma cornu-damae and Cordyceps militaris were collected from Mt. Seunghak in Busan, Korea on August 21, 2012. The fruiting bodies were cylindrical, with tapered ends and golden red in color. The fruiting bodies contained abundant conidiophores bearing single-celled conidia, but no perithecia or asci. Pure culture of the fungal isolates was obtained through single-spore isolation. Analyses of morphological characteristics, including conidia shape, and phylogenetic traits, using internal transcribed spacer sequences, showed that these isolates belonged to the species Simplicillium lanosoniveum. Although this fungal species is known to be mycoparasitic, the isolates obtained in this study were unable to infect fungi. However, silkworms (Bombyx mori) inoculated with the fungal isolates died during the larval or pupal stages, as has been shown for the strongly entomopathogenic fungus Beauveria bassiana. This study is the first report of the entomopathogenicity of S. lanosoniveum and indicates its potential for use in biological control of insects.

• The Korean Journal of Mycology
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• v.45 no.2
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• pp.160-166
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• 2017

The genus Pseudoperonospora (Peronosporales, Oomycota) comprises six accepted species, including Ps. cubensis, which causes downy mildew on many economically important cucurbitaceous crops, and Ps. humuli, which occurs on hops. During a survey of downy mildew flora in Korea, a previously unreported species of Pseudoperonospora was found on Urtica angustifolia. Based on molecular phylogenetic and morphological analyses, the causal agent was identified as Pseudoperonospora urticae. This is the first report of Pseudoperonospora urticae occurring on Urtica angustifolia in Korea.

• Journal of Microbiology
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• v.44 no.2
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• pp.248-253
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• 2006

Lymphocystis disease virus (LCDV) is the causative agent of lymphocystis disease. The viruses have been divided into three genotypes (genotype I for LCDV-1, II for Japanese flounder isolates, and III for rockfish isolates) on the basis of major capsid protein (MCP) gene sequences. In this study, we developed a multiplex PCR primer set in order to distinguish these genotypes. We also analyzed the MCP gene of a new LCDV isolate from the sea bass (SB98Yosu). Comparison of sequence identities between SB98Yosu and eight Japanese flounder isolates, revealed identity of more than 90.1 % at nucleotide level and 96.5% at deduced amino acid level, respectively. Phylogenetic analyses based on the MCP gene showed that SB98Yosu belongs to genotype II, along with Japanese flounder isolates. Multiplex PCR based on the MCP gene allowed us to identify these genotypes in a simple and rapid manner, even in a sample that contained two genotypes, in this case genotypes II and III.