• Title/Summary/Keyword: Phenotypic analysis

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Phenotypic Characteristics of New Mutant, Non-molting f(nm-f) of Bombyx mori (신돌연변이 불면잠 nm-f의 유전형질)

  • 선희숙;노시갑
    • Journal of Sericultural and Entomological Science
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    • v.42 no.2
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    • pp.86-92
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    • 2000
  • Studies were carried out to investigate the phenotypic characteristics of the non-molting mutant (nm-f) which was mapped on the 2nd linkage group. The results obtained were as follows : The nm-f mutant was distinguishable in the 3rd day of hatching. About 80 percentage of the non-molting mutant larvae died at the first instar within 10 days of hatching. The remaining larvae survived to the 2nd ad the 3rd instar but did not live to the final instar. There was no difference in non-molting nutant manifestation between hibernating and artificial hatching eggs. As a result of hemolymph protein analysis, the protein content on nm-f mutant was less than the normal larvae's. Therefore, we conclude that the characterization of nm-f is similar to the already known strains of non-molting mutant and the shortage of hemolymph protein is closely related to the non-molting characteristic in nm-f.

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Genetic and Phenotypic Diversity of Dichlorprop-Degrading Bacteria Isolated from Soils

  • Park, Hae-Dong;Ka, Jong-Ok
    • Journal of Microbiology
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    • v.41 no.1
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    • pp.7-15
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    • 2003
  • Nine dichlorprop-degrading bacteria and three pairs of bacteria showing syntrophic metabolism of the herbicide were isolated from soils, and their genetic and phenotypic characteristics were investigated. Analysis of 16S rDNA sequences indicated that the isolates were related to members of the genera, Sphingomonas, Herbaspirillum, and Bradyrhizobium. Twelve different chromosomal DNA patterns were obtained by polymerase-chain-reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences from the 15 isolates. The isolates were able to utilize the herbicide dichlorprop as a sole source of carbon and energy and their dichlorprop derogative pathways were induced by the presence of dichlorprop. Most of the isolates and syntrophic pairs were able to degrade both (R)- and (S)-dichlorprop, but strain DP522 exhibited enantioselective degradation of (S)-dichlorprop. The isolates degraded 2,4-dichlorophenoxyacetic acid, 2-methyl-4-chlorophenoxyacetic acid , and mecoprop, in addition to dichlorprop. Oxygen uptake experiments indicated that most of the isolates degraded dichlorprop through 2,4-dichlorophenol.

Deciphering Macrophage Phenotypes upon Lipid Uptake and Atherosclerosis

  • Jihye Lee;Jae-Hoon Choi
    • IMMUNE NETWORK
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    • v.20 no.3
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    • pp.22.1-22.21
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    • 2020
  • In the progression of atherosclerosis, macrophages are the key immune cells for foam cell formation. During hyperlipidemic condition, phagocytic cells such as monocytes and macrophages uptake oxidized low-density lipoproteins (oxLDLs) accumulated in subintimal space, and lipid droplets are accumulated in their cytosols. In this review, we discussed the characteristics and phenotypic changes of macrophages in atherosclerosis and the effect of cytosolic lipid accumulation on macrophage phenotype. Due to macrophage plasticity, the inflammatory phenotypes triggered by oxLDL can be re-programmed by cytosolic lipid accumulation, showing downregulation of NF-κB activation followed by activation of anti-inflammatory genes, leading to tissue repair and homeostasis. We also discuss about various in vivo and in vitro models for atherosclerosis research and next generation sequencing technologies for foam cell gene expression profiling. Analysis of the phenotypic changes of macrophages during the progression of atherosclerosis with adequate approach may lead to exact understandings of the cellular mechanisms and hint therapeutic targets for the treatment of atherosclerosis.

Correlation Analysis among Milk Yield, Milk Composition, and Somatic Cell Scores by Definition of Contemporary Group (동기우군의 정의에 따른 유량, 유성분, 체세포 점수간 상관분석)

  • Jung, Woon-Young;Cho, Kwang-Hyun;Choi, Tae-Jeong;Choi, Jae-Kwan;Choi, Ho-Sung;Cho, Ju-Hyun;Choy, Yun-Ho
    • Journal of agriculture & life science
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    • v.46 no.1
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    • pp.113-121
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    • 2012
  • A total of 150,624 records of Holstein milk production collected from 2005 to 2009 were analyzed to investigate the effects of two different contemporary group definitions, parity and somatic cell score (SCS). The first definition (H BY S) of contemporary group was milking cows and heifers born in the same year and season. And the second thing (H CY S) was milking cow and heifers that delivered calves in the same year and season. Effects of contemporary group, parity and regression effect on SCS from two models were highly significant sources of variation. Coverage of variation ($R^2$) was somewhat higher in models with H BY S as contemporary group. From multivariate models with H BY S, phenotypic correlation coefficients of milk components were estimated high and positive. However, the phenotypic correlation coefficient between milk yield and SCS was -0.09, which was low enough to evidence no correlation between them. Phenotypic correlation between SCS and butter fat or between SCS and protein were also negligible but negative. From multivariate models with H CY S as contemporary group, phenotypic correlation among milk traits and SCS were similar to the estimates from models with H BY S. However, SCS in these models were lowly but negatively correlated with milk yield, milk protein, butter fat or SNF, and the phenotypic correlation coefficients of which were -0.10, -0.08, -0.08, -0.11, respectively.

Revision of the early-onset periodontitis into the homogeneous phenotypic subsets (조기발병형 치주염의 균질성 표현형 소집단으로의 재분류)

  • Choi, Kwang-Sik;Choi, Jeom-Il;Kim, Sung-Jo
    • Journal of Periodontal and Implant Science
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    • v.26 no.3
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    • pp.725-734
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    • 1996
  • The present study has been performed to revise the forms of early-onset periodontitis(EOP) into the homogeneous phenotypic subsets by cluster analysis using sets of clinical parameters. Retrospective radiographic interproximal alveolar bone levels were measured from cemento-enamel junctions on patients who have previously been diagnosed as having one of EOP during last 5 years. Mean interproximal bone levels(BL) and mesial bone level(Ratio) of 1st molars relative to mean interproximal bone levels of adjacent teeth(lst and 2nd premolars and canines)were calculated on each patient. Using parameters BL and Ratio(BR group) or BL, Ratio and age(BRA group), cluster analysis was performed to revise EOP patients into homogeneous subsets. At least three or four cluster could be homogeneously formed both in BR or BRA groups with statistically significant differences in parameters used among clusters as evidenced by MANOVA test. It was shown that the greater the BL, the smaller the Ratio was. It was also evident that mean interproximal bone levels were lowest aroud 1st molars and/or incisors regardless of cluster types. The results has provided cluster-based studies for identifying laboratory markers responsible for the development of EOP subsets.

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Agronomic Characters and Their Correlation Coefficient on Black Seeded Soybeans Collected in Chonnam Province

  • Kwon, Byung-Sun;Choi, Seong-kyu;Shin, Jeong-Sik;Shin, Dong-Youn;Kyu Hwan
    • Plant Resources
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    • v.5 no.2
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    • pp.118-123
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    • 2002
  • In order to obtain the genetic information on the quantitative characters of black seeded soybeans, which would be needed to improve selection efficiency for breeding high yielding genotype, 45 varieties of black seeded soybeans collected in Chonnam, Korea were grown and variations of several important characters were observed. Heritability of each observed character, phenotypic and genotypic correlations among the characters and contribution of each yield component on grain yield through path coefficient analysis were estimated. Both number of pods per plant and 100-seed weight showed not only high heritability but also highly significant phenotypic and genotypic correlation with seed yield, and hence it was desirable to select plants with more number of pods per plant and higher 100-seed weight than raise seed yield of black seeded soybeans collected in Chonnam. In addition, number of pods per and 100-seed weight were proved to be the most influential variables on the viability of seed yield by path coefficient analysis. Since these showed the high heritability of number of pods per plant, selection of plants with higher 100-seed weight would be more efficient for breeding high yielding genotype.

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Phenotypic Analysis of Neurofilament Light Chain E397K Mutant in Cultured Cells

  • Kim, Sung-Kuk;Chang, Jong-Soo
    • Biomedical Science Letters
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    • v.12 no.4
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    • pp.413-418
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    • 2006
  • Charcot-Marie-Tooth disease (CMT) is blown as one of the inherited disorder of peripheral nervous system. Recently, it was found that point mutations in the neurofilament light subunit (NF-L) gene cause CMT. Neurofilaments (NFs) are heteropolymers consist of NF-L, NF-M and NF-H. To assess the relationship between CMT and NF-L mutation in cellular level, we performed phenotypic analysis of the mutant NF-L (E397K) using cultured cell lines. Vimentin-deficient human adrenal carcinoma SW13 (Vim-) cells have a potential to form the intermediate filaments when the cells are expressing both NF-L and NF-M. Our results show that co-expression of wild type NF-L with NF-M showed intermediate filament formation in SW13 (Vim-) cells, while E397K with NF-M did not. This result means that E397K mutant lost its ability to form the intermediate filament in vivo, and further suggests that the E397K mutation is closely related to CMT.

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Variability of Osteocalcin Status in Chinese Holstein Cattle: Do Phylogeny, Vitamin D or Gene Polymorphisms Matter?

  • Ferreri, Miro;Gao, Jian;Ren, Gaixian;Chen, Liben;Su, Jingliang;Han, Bo
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.2
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    • pp.173-180
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    • 2011
  • Osteocalcin (OC), a marker of bone turnover, displays patterns in relation to physiological and genetic factors. Here, we present an association study in a population of Chinese Holstein cattle (n = 24) with OC serum concentration as a phenotypic trait. We hypothesised that OC status is associated with phylogeny, vitamin D serum level and single nucleotide polymorphisms (SNPs). Mitochondrial DNA (mtDNA) was used as an unlinked marker to examine phylogeny and linkage to measured phenotypic traits of vitamin D and OC status. Following an association study with OC serum variability as the trait, genotyping of SNPs (n = 27) in OC-related genes was performed. Candidate SNPs were chosen in genes with an emphasis on the vitamin D and vitamin K pathways. Multivariant factor analysis revealed a correlation between vitamin D serum concentration and a SNP in the gene GC (rs43338565), which encodes a vitamin D-binding protein, as well as between a SNP in NFATc1 (rs42038422) and OC concentration. However, univariate analysis revealed that population structure, vitamin D serum levels and SNPs were not significant determinants of OC status in the studied group.