• Asian-Australasian Journal of Animal Sciences
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• 제16권8호
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• pp.1087-1092
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• 2003

As an experimental reference population, crosses between Korean native pig and Landraces were established and information on growth traits was recorded. Animals were genotyped for 24 microsatellite markers covering chromosomes 2, 6, and 7 for partial-genome scan to identify chromosomal regions that have effects on growth traits. quantitative trait loci (QTL) effects were estimated using interval mapping by the regression method under the line cross models with a test for imprinting effects. For test of presence of QTL, chromosome-wide and single position significance thresholds were estimated by permutation test and normal significance threshold for the imprinting test were derived. For tests against the Mendelian model, additive and dominance coefficients were permuted within individuals. Thresholds (5% chromosome-wide) against the no-QTL model for the analyzed traits ranged from 4.57 to 4.99 for the Mendelian model and from 4.14 to 4.67 for the imprinting model, respectively. Partial-genome scan revealed significant evidence for 4 QTL affecting growth traits, and 2 out of the 4 QTLs were imprinted. This study demonstrated that testing for imprinting should become a standard procedure to unravel the genetic control of multi-factorial traits. The models and tests developed in this study allowed the detection and evaluation of imprinted QTL.

• Asian-Australasian Journal of Animal Sciences
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• 제24권11호
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• pp.1504-1513
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• 2011

It is important to identify genetic interactions related to human diseases or animal traits. Many linear statistical models have been reported but they did not consider genetic interactions. Genotype matrix mapping (GMM) has been developed to identify genetic interactions. This study uses the GMM method to detect superior SNP combinations of the CCDC158 gene that influences average daily gain, marbling score, cold carcass weight and longissimus muscle dorsi area traits in Hanwoo. We evaluated the statistical significance of the major SNP combinations selected by implementing the permutation test of the F-measure. The effect of g.34425+102 A>T (AA), g.8778G>A (GG) and g.4102+36T>G (GT) SNP combinations produced higher performance of average daily gain, marbling score, cold carcass weight and the longissimus muscle dorsi area traits than the effect of a single SNP. GMM is a fast and reliable method for multiple SNP analysis with potential application in marker-assisted selection. GMM may prospectively be used for genetic assessment of quantitative traits after further development.

• 제어로봇시스템학회:학술대회논문집
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• 제어로봇시스템학회 2004년도 ICCAS
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• pp.1568-1572
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• 2004

This paper proposes a new online calibration algorithm for the array antenna system. As you know, the several previous calibration methods for the mutual coupling did not estimate but measure mutual coupling effect at the real or test-bed system directly. Therefore we suggest some idea to compensate the calibration errors due to mutual coupling effect and mismatch in cables and electronic modules without the off-line calibration. In this work, we can calibrate the array antenna system under the operation of the system using Independent Component Analysis(ICA). This is what is called an online calibration. As you know, the ICA method has permutation and scaling problems. However, we solve problems of the ICA method and apply it to the calibration of an array antenna. The method simultaneously estimates the DOA(Direction of Arrival) of the signals, and calibrates the array for that specific angle. The proposed algorithm is evaluated by computer simulation and its behavior is illustrated by a numerical example.

• 경영과학
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• 제27권3호
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• pp.15-31
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• 2010

We consider a reverse logistics network design problem for recycling. The problem consists of three stages of transportation. In the first stage products are transported from retrieval centers to disassembly centers. In the second stage disassembled modules are transported from disassembly centers to processing centers. Finally, in the third stage modules are transported from either processing centers or a supplier to a manufacturer, a recycling site, or a disposal site. The objective is to design a network which minimizes the total transportation cost. We design a cooperative coevolutionary algorithm to solve the problem. First, the problem is decomposed into three subproblems each of which corresponds to a stage of transportation. For subproblems 1 and 2, a population of chromosomes is constructed. Each chromosome in the population is coded as a permutation of integers and an algorithm which decodes a chromosome is suggested. For subproblem 3, an heuristic algorithm is utilized. Then, a performance evaluation procedure is suggested which combines the chromosomes from each of two populations and the heuristic algorithm for subproblem 3. An experiment was carried out using test problems. The experiments showed that the cooperative coevolutionary algorithm generally tends to show better performances than the previous genetic algorithm as the problem size gets larger.

• 한국생물정보학회:학술대회논문집
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• 한국생물정보시스템생물학회 2004년도 The 3rd Annual Conference for The Korean Society for Bioinformatics Association of Asian Societies for Bioinformatics 2004 Symposium
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• pp.29-35
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• 2004

유방암 환자의 임상정보(clinical features)와 cDNA microarray 기술을 이용하여 얻은 유전자 발현 프로파일은 유방암 예후 인자를 찾는 데에 매우 중요하다. 본 논문에서는 임상정보와 유전자 발현 정보를 접목해서 분석하는 방법으로써 주성분 분석(Principal Component Analysis)을 이용하였다. 이 방법은 다변량 자료의 차원을 줄이는 방법으로써, 대용량 실험 데이터로 인해 발생하는 문제점을 해결하기 위하여 많이 쓰이고 있다. 본 연구에서는 주성분 분석을 이용하여 먼저 한국인 유방암 환자 73명의 cDNA microarray 데이터 차원을 줄이고, 이를 통해 얻어진 주성분(Principal Components)과 임상정보 데이터와의 상관관계를 보았다. One-way ANOVA를 이용한 상관관계 분석 결과의 P-value는 permutation test를 통해 검증하였다. 동일한 방법을 estrogen receptor(ER)(+) 환자 20명과 ER(-) 환자 31명에 적용해본 결과, ER(-) 환자 중에서 재발과 관련된 유전자를 찾을 수 있었다. 주성분 분석을 molecular phenotypic profiles of clinical features에 이용한 결과 발견된 유전자는 유방암의 재발과 관련된 예후 인자로서 의미가 있다.

• Geomechanics and Engineering
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• 제16권3호
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• pp.247-255
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• 2018

Organic-sandy soils that contain abundant organic matters are widely encountered in estuarine cities. Due to the existence of organic matters, the strength and stiffness of this type of soil are significantly low. As a result, various geotechnical engineering problems such as difficulties in piling and constructing embankments and a lack of strength in poured concrete may occur in many estuarine sites; ground improvement such as cement treatment to this type of soils is needed. In this study, laboratory tests were performed to investigate the compressive strength of organic-sandy soil reinforced with primarily cement, in which the influences of several factors, namely types of cement and additional stabilizing agent, cement content, and water-cement ratio, were investigated and the orthogonal experimental design scheme was adopted. Based on the test results, an optimal permutation of these influencing factors is suggested for the reinforcement of organic-sandy soils, which can provide a useful reference for the relevant engineering practice.

• Reproductive and Developmental Biology
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• 제28권2호
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• pp.107-112
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• 2004

Molecular genetic markers were genotyped used to detect chromosomal regions which contain economically important traits such as growth traits in pigs. Three generation resource population was constructed from a cross between the Korean native boars and Landrace sows. A total of 193 F2 animals from intercross of F1 were produced. Phenotypic data on 7 traits, birth weight, body weight at 3, 5, 12, 30 weeks of age, live empty weight were collected for F2 animals. Animals including grandparents (F0), parents (F1), offspring (F2) were genotyped for 194 microsatellite markers covering from chromosome 1 to 18. Quantitative trait locus analyses were performed using interval mapping by regression under line-cross model. To characterize presence of imprinting, genetic full model in which dominance, additive and imprinting effect were included was fitted in this analysis. Significance thresholds were determined by permutation test. Using imprinting full model, four QTL with expression of imprinted effect were detected at 5% chromosome-wide significance level for growth traits on chromosome 1, 5, 7, 13, 14, and 16.

• 응용통계연구
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• 제33권6호
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• pp.665-682
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• 2020

본 논문은 순수하게 파이썬 언어로 작성된 연산에 대하여 just-in-time (JIT) 컴파일을 적용하여 전체 계산 속도를 향상시킬 수 있는 numba 라이브러리에 대한 사용법과 응용에 대하여 소개한다. 실제 통계 계산 문제에 대한 numba 라이브러리의 적용에 대한 예제로 반복문 사용이 요구되는 통계 계산 문제들 중 순열 검정과 정규 혼합 분포의 모수 추정의 EM 알고리즘을 고려하였으며 순수한 파이썬 구문 및 반복문을 활용한 계산 시간과 numba를 활용한 계산 시간을 비교하여 numba 라이브러리 활용의 효율성을 수치적으로 제시하였다.

• 한국가축번식학회지
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• 제25권4호
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• pp.295-304
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• 2001

양적형질 유전자 좌위 (QTL)의 탐색과 이들의 발현 양상 규명을 위해 Berkshire종과 Yorkshire종 간의 교배를 통해 생산된 F$_2$ 실험집단에서 regression interval mapping이 이루어졌다. 모두 525마리의 F$_2$ 자손들에서 일당 증체량, 평균 등지방 두께, 배장근 단면적이 표현형으로 조사되어 분석에 이용되었으며 모돈의 번식능력에 관련된 QTL 존재 여부 추정을 위해 간접 형질로 인정되고 있는 생시체중과 이유 시 체중을 분석에 포함하였다. 양적형질의 분리 여부를 추론하기 위하여 돼지의 2번 염색체에서 8종의 microsatellite 표지인자가 선택되어 유전자형이 조사되었다. 각각의 유전적 모델에서 산출된 통계량으로부터 QTL 존재 여부와 특정 QTL 발현 양상에 대한 여부를 나타낼 수 있는 인정되는 수준의 type I 오차율을 제어할 수 있는 임계값 (threshold)을 permutation test에 의해 제시하였다. QTL의 존재와 그 QTL의 Imprinting 여부는 부계와 모계를 통해 원가계 1세대의 대립유전자가 전달되는 과정에서 발현되는 특성을 분리시키는 통계적 의형을 설정하여 검정 통계량을 산출하였다. 분석에 이용된 3가지 형질과 연관된 3종류의 QTL 존재 가능성을 돼지의 2번 염색체에서 확인하였으며, 이들 중 평균 등지방 두께와 배장근 단면적에 각각 영향을 미칠 것으로 추론된 2종류의 QTL 발현은 정상적인 Mendelian 유전양식을 따르지 않고 imprinting된다는 증거를 얻어냈다. 또한 이들 imprinting되는 QTL은 이미 imprinting 표현 양식을 가진다고 알려진 IGF II 유전자의 위치와 거의 동일한 염색체강의 지점에서 부계로 전달되는 QTL만이 발현되는 특징을 보이는 것으로 밝혀졌다. 한편 Mendelian 모형과 imprinting 모형 모두에서 유의적인 임계값 이상을 보이는 검정 통계량이 산출된 일당 증체량 연관 QTL은 두 모형간의 적정성 분석을 위한 검정을 퐁해 Mendelian 양식을 따른 것으로 최종 확인되었다.

• 성인간호학회지
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• 제14권1호
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• pp.114-124
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• 2002

Purpose: This study was conducted to investigate whether a self-efficacy information resources program based on the self-efficacy theory of Bandura (1986) would increase self-efficacy and self-care in patients with CAD. Method: The study was a one group, pretest-posttest pre-experimental design research. The Self-Efficacy Information Resources Program was composed of a video tape program and a telephone coaching program and based on vicarious experiences and verbal persuation. The Program was used as an experimental treatment from February 27. to May 27, 1999. Twenty patients participated from a university hospital located in Seoul. Three days later after a pretest the telephone coaching program was given. It was repeated weekly during a 3 week period. At the end of this period post-test data were collected by mail. Data were analyzed with a random permutation test using SAS program. Result: 1) Scores on self-efficacy after the Self-Efficacy Information Resources Program were significantly higher than before the program (p=0.06). 2) Scores on self-care after the Program were significantly higher (subjective self-care, p=0.0005; objective self-care, p= 0.0002) than before the program. Conclusion: The Program was found to be an effective nursing intervention for increasing self-efficacy and self-care. When nurses who care for CAD patients plan to increase their patients' self care ability, they should always consider the concept of self-efficacy.