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Genetic Clarification of Auricularia heimuer Strains Bred and Cultivated in Korea Using the ITS and IGS1 rDNA Region Sequences

  • Nitesh Pant;HyeongJin Noh;Won-Ho Lee;Seong Hwan Kim
    • Mycobiology
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    • v.51 no.2
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    • pp.109-113
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    • 2023
  • Auricularia is one of the broadly cultivated edible mushrooms in Korea. Most of the Korean Auricularia strains used for cultivation and breeding are known as A. auricula-judae. Recently, this species has been reported to belong to a species complex. Therefore, this study was carried out to genetically clarify the bred and cultivated Korean A. auricula-judae strains. The internal transcribed spacer (ITS) and IGS1 rDNA region sequences were determined from 10 A. auricula-judae strains by PCR and sequencing. Variation in the nucleotide sequence and sequence length of the two rDNA regions were found among the seven A. auricula-judae strains. A maximum-likelihood (ML) phylogenetic tree based on the ITS sequences clearly placed all the 10 Korean A. auricula-judae strains in the A. heimuer clade of the A. auriculajudae complex. A. heimuer is diverged from A. auricula-judae. An ML phylogenetic tree based on the IGS1 sequences revealed the close relationship between Korean A. heimuer strains to Chinese A. heimuer strains. But each strain could be distinguishable by the IGS1 sequence. Furthermore, progeny strains in the seven Korean strains could be differentiated from their parental strains by the IGS1 sequence based phylogenetic tree. Our results are expected to be used to complement the distinction of domestic Auricularia cultivars.

Analysis of Welding Distortion during the Production of Fuel Tanks for Excavators (연료탱크 제작시 시뮬레이션을 통한 용접변형 해석)

  • Yang, Young-Soo;Kim, Duck-Youn;Bae, Kang-Yul
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.15 no.6
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    • pp.24-34
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    • 2016
  • To attach a fuel tank to an excavator, two sets of mounting plates on which three bosses are attached are welded onto the tank. In this study, the welding process of a fuel tank for an excavator was modeled using a finite element numerical method. The tank was modeled as a simple plate to which the mounting plate or bosses were attached by fillet welding. Thermal and thermo-elasto-plastic analyses of the welding process were carried out to predict the temperature distribution and material distortion during welding, respectively. Three different welding sequences for the tank were also modelled to compare the deformation that occurred due to each welding sequence. The results of the analysis predicted that changing the welding sequence around the mounting plate could not position the boss within the allowable dimensional range. The results also revealed the sequence in which the maximum distortion of the bosses welded onto the tank was 30% less than the maximum distortion due to the other sequences.

Analysis of Delamination Behavior on the Stacking Sequence of Prosthetic Foot Keel in Glass fiber Reinforced Laminates (인공발(Prosthetic Foot) 스프링용 유리섬유강화 적층재의 적층배향에 따른 층간분리거동 해석)

  • Song, Sam-Hong;Kim, Cheol-Woong
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.27 no.4
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    • pp.623-631
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    • 2003
  • It is considered that the application of advanced composite materials to the prostheses for the disables is important to improve their bio-mechanical performance. Particularly, energy storing foot prosthesis is mostly important to restore gait ability of the disables with low-extremity amputation since it could provide propulsion at terminal stance enhancing the disables ability to walk long distance even run and jump. Therefore, the energy storing spring of Prosthetic foot keel under cyclic bending moment use mainly of high strength glass fiber reinforced plastic. The main objective of this study was to evaluate the stacking sequence effect using the delamination growth rate(dA$_{D}$/dN) of energy storing spring in glass fiber reinforced plastic under cyclic bending moment. The test results indicated that the shape of delamination zone depends on stacking sequence in GFRP laminates. Delamination area(A$_{D}$) turns out that variable types with the contour increased non-linearly toward the damage zones.nes.

Nucleotide Divergence Analysis of IGS Region in Fusarium oxysporum and its formae speciales Based on the Sequence

  • Kim, Hyun-Jung;Min, Byung-Re
    • Mycobiology
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    • v.32 no.3
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    • pp.119-122
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    • 2004
  • The intergenic spacer(IGS) sequence of Fusarium oxysporum have been reported to provide reliable information concerning intraspecific variation and phylogeny of fungal species. The eleven strains of Fusarium oxysporum and its formae speciales belonging to section Elegans were compared with sequencing analysis. The direct sequencing of partial IGS was carried out using PCR with primer NIGS1(5'-CTTCGCCTCGATTTCCCCAA-3')/NIGS2(5'-TCGTCGCCGACAGTTTTCTG-3') and internal primer NIGS3(5'-TCGAGGATCGATTCGAGG-3')/NIGS4(5'-CCTCGAATCGATCCTCGA-3'). A single PCR product was found for each strain. The PCR fragments were sequenced and revealed a few within species polymorphisms at the sequence level. The size of partial IGS sequencing of F. oxysporum was divided into three groups; $526{\sim}527$ bp including F. o. f. sp. chrysanthemi, cucumerinum, cyclaminis, lycopersici, and fragariae; $514{\sim}516$ bp including F. o. f. sp. lilii, conglutinans, and raphani; 435 bp for F. o. f. sp. cucumerinum from Korea. Sequence analysis of PCR products showed that transitions were more frequent than transversions as well as the average numbers of substitution per site were range 0.41% to 3.54%.

Cloning and Characterization of Genes Controlling Flower Color in Pharbitis nil Using AFLP (Amplified Fragment Length Polymorphism) and DDRT (Differential Display Reverse Transcription)

  • Kim, Eun-Mi;Jueson Maeng;Lim, Yong-Pyo;Yoonkang Hur
    • Journal of Photoscience
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    • v.7 no.2
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    • pp.73-78
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    • 2000
  • To analyze molecular traits determining pigmentation between Pharbitis nill violet and white, Amplified Fragment Length Polymorphism(AFLP) and Differential Display Reverse Transcription(DDRT) experiments were carried out with either genomic DNAs or total RNAs isolated from both plants. Results of AFLP experiment in combination of 8 EcoRⅠ primers with 6 MseⅠ primers showed 41 violet-and 60 white-specific DNA bands. In the subsequent experiment, 22 violet-and 22 white-specific DNA fragments were amplified by PCR with DNAs eluted. The sizes of the fragments range from 200 to 600bp. DDRT using total RNA produced 19 violet-and 17 white-specific cDNA fragments, ranging from 200 to 600bp. The fragments obtained by both AFLP and DDRT had been cloned into pGEM T-easy vector, amplified and subjected to the nucleotide sequence analyses. As a result of Blast sequence analysis, most of them sequenced up to date showed no similarity to any Known gene, while few has similarity to known animal or plant genes. An AFLP clone V6, for example, has a strong sequence similarity to the human transcription factor LZIP-alpha mRNA and a DDRT clone W19 to Solanum tuberosum 3-hydroxy-3-methylglutaryl coenzyme A reductase mRNA.

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Recent galaxy mergers and star formation history of red sequence galaxies in rich Abell clusters at z ≤ 0.1

  • Sheen, Yun-Kyeong;Yi, Sukyoung K.;Ree, Chang H.;Jeffe, Yara;Demarco, Ricardo;Treister, Ezequiel
    • The Bulletin of The Korean Astronomical Society
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    • v.41 no.1
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    • pp.33.3-34
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    • 2016
  • We explored the GALEX UV properties of optical red sequence galaxies in 4 rich Abell clusters at z ~ 0.1. In particular, we tried to find a hint of merger-induced recent star formation (RSF) in red sequence galaxies. Based on the NUV - r' colors of the galaxies, about 36% of the post-merger galaxies were classified as RSF galaxies with a conservative criterion (NUV - $r^{\prime}{\leq}5$), and that number was doubled (~ 72%) when using a generous criterion (NUV - $r^{\prime}{\leq}5.4$). Post-merger galaxies with strong UV emission showed more violent, asymmetric features on the deep optical images. Also it turned out that all massive RSF galaxies (Mr' < -22 and NUV - $r^{\prime}{\leq}5$) exhibited post-merger signatures. Our results suggested that only 30% of RSF red sequence galaxies show morphological hints of recent galaxy mergers. This implies that internal processes (e.g., stellar mass-loss or hot gas cooling) for the supply of cold gas to early-type galaxies may play a significant role in the residual star formation of early-type galaxies at a recent epoch.

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Optimization of Multilayered Foam-panel Sequence for Sound Transmission Loss Maximization (전달손실 최대화를 위한 다층 흡음재-패널 배열 최적설계)

  • Kim, Yong-Jin;Lee, Joong-Seok;Kang, Yeon-June;Kim, Yoon-Young
    • Transactions of the Korean Society for Noise and Vibration Engineering
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    • v.18 no.12
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    • pp.1262-1269
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    • 2008
  • Though multilayered foam-panel structures have been widely used to reduce sound transmission in various fields, most of the previous works to design them were conducted by repeated analyses or experiments based on initially given configurations or sequences. Therefore, it was difficult to obtain an optimal sequence of multilayered foam-panel structure yielding superior sound isolation capability. In this work, we propose a new design method to sequence a multi-panel structure lined with a poroelastic material having maximized sound transmission loss. Being formulated as a one-dimensional topology optimization problem fur a given target frequency, the optimal sequencing of panel-poroelastic layers is systematically carried out in an iterative manner. In this method, a panel layer is expressed as a limiting case of a poroelastic layer to facilitate the optimization process. This means that main material properties of a poroelastic material are treated as interpolated functions of design variable. The designed sequences of panel-poroelastic multilayer were shown to be significantly affected by the target frequencies; more panels were obtained at higher target frequency. The sound transmission loss of the system was calculated by the transfer matrix derived from Biot's theory.

Cloning of a Laccase Gene Fragment from Ganoderma lucidum (영지버섯 Laccase 유전자의 구리결합부위 I과 IV사이 지역의 클로닝)

  • 조지현;최형태;김경훈
    • Korean Journal of Microbiology
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    • v.36 no.3
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    • pp.192-195
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    • 2000
  • Degenerate primevs corresponding to the consensus sequences of the copper-binding regions in the N- and Cterminal domains of fungal laccases were used to isolate laccase gene-specific sequences froin a white rot rungus Ganodern~a lucidrm w-hich has been known to strengthen the imnnne system. A 1.6 Kbp fragment was amplified by PCR and its base sequence was detenuiued. Locating seven iutrous within the base sequence, we could deduce its amino acid sequence. The nucleotide sequence witl~out introlls was 47Y0 identical to that of lee1 gene of Pametes wllosa; lhe identity in amino acid sequences of the two was 7994 The deduced amino acid seqoence was also sunilar to those of Coriolus versicolo~ kc3 (79%); Co~,iolz~s hirsutus phenolouiduse (78%), Trainetes vel.srcoloi. lccl (77%), Trametes ~!i/Iosa Ice2 (77%) and Trametes vemicolor kc4 (66%).

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A Method for Mining Interval Event Association Rules from a Set of Events Having Time Property (시간 속성을 갖는 이벤트 집합에서 인터벌 연관 규칙 마이닝 기법)

  • Han, Dae-Young;Kim, Dae-In;Kim, Jae-In;Na, Chol-Su;Hwang, Bu-Hyun
    • The KIPS Transactions:PartD
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    • v.16D no.2
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    • pp.185-190
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    • 2009
  • The event sequence of the same type from a set of events having time property can be summarized in one event. But if the event sequence having an interval, It is reasonable to be summarized more than one in independent sub event sequence of each other. In this paper, we suggest a method of temporal data mining that summarizes the interval events based on Allen's interval algebra and finds out interval event association rule from interval events. It provides better knowledge than others by using concept of an independent sub sequence and finding interval event association rules.

A Novel Integration Mechanism of FMIPv6 and HMIPv6 to Reduce Loss and Out-of-Sequence Problem (패킷 손실과 순서 어긋남 문제를 해결할 수 있는 새로운 FMIPv6와 HMIPv6 통합 메커니즘)

  • Lee, Jae-Hwoon;Lim, Yu-Jin
    • Journal of KIISE:Information Networking
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    • v.34 no.2
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    • pp.110-119
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    • 2007
  • Mobile IPv6 (MIPv6) enables a mobile node (MN) to maintain its connectivity with a correspondent node (CN) while changing its point of attachment. In MIPv6, packets sent from a CN to a MN during handover are lost. Several mechanisms including FMIPv6 and HMIPv6 have been proposed in order to minimize packet loss. However, such mechanisms still suffer from performance degradation due to not only packet loss but also out-of-sequence packets. In this paper, we propose I-FHMIPv6 to resolve packet loss as well as the out-of-sequence packet problem. In I-FHMIPv6, the flush message is newly defined in order to notify a home agent (HA) or CN of the fact that the binding cache entry of a MN is about to be updated. A MN receiving the flush message can know that there is no more packets transmitted via the previous route, which resolve the out-of-sequence packet problem. Moreover, with the proposed mechanism, we can minimize packet loss by integrating FMIPv6 and HMIPv6 efficiently. I-FHMIPv6 is evaluated by performing simulations, and the simulation results show that I-FHMIPv6 outperforms FMIPv6 and HMIPv6.