• Title/Summary/Keyword: Organism Quality

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Impact assessment to the Water Environmental and Biodiversity on the Constant Stagnation Zone by River Floating Debris (하천 부유 쓰레기 상습 정체 구간의 수환경 및 생물다양성 영향 평가)

  • Kim, Heung-Min;Bak, Su-Ho;Jang, Seon-Woong;Kwak, Seok Nam;Yoon, Hong-Joo
    • The Journal of the Korea institute of electronic communication sciences
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    • v.13 no.1
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    • pp.213-220
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    • 2018
  • Investigation and policy related to floating debris are focused on water treatment or disposal costs, and water pollution caused by floating debris has not been evaluated. In this study, it was surveyed the water environment pollution on the stagnation zone by floating debris in Nakdong River basin of Busan Metropolitan City. The water quality of the constant stagnation zone had lower DO than that of the non-stagnation zone. COD and Chl-a showed similar concentrations in the both zones. As a result of the collecting net surveys which were kept floating during 3 months, the most abundant species(4 species) of arthropods appeared, and Chironomidae sp. is dominant. It was also resistant to the deteriorated water quality, and emerged as a Lepomis macrochirus on the stagnant waters with a slowly flow rate.

Fabrication of a Partial Genome Microarray of the Methylotrophic Yeast Hansenula polymorpha: Optimization and Evaluation of Transcript Profiling

  • OH , KWAN-SEOK;KWON, OH-SUK;OH, YUN-WI;SOHN, MIN-JEONG;JUNG, SOON-GEE;KIM, YONG-KYUNG;KIM, MIN-GON;RHEE, SANG-KI;GERD GELLISSEN,;KANG, HYUN-AH
    • Journal of Microbiology and Biotechnology
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    • v.14 no.6
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    • pp.1239-1248
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    • 2004
  • The methylotrophic yeast Hansenula polymorpha has been extensively studied as a model organism for methanol metabolism and peroxisome biogenesis. Recently, this yeast has also attracted attention as a promising host organism for recombinant protein production. Here, we describe the fabrication and evaluation of a DNA chip spotted with 382 open reading frames (ORFs) of H. polymorpha. Each ORF was PCR-amplified using gene-specific primer sets, of which the forward primers had 5'-aminolink. The PCR products were printed in duplicate onto the aldehyde-coated slide glasses to link only the coding strands to the surface of the slide via covalent coupling between amine and aldehyde groups. With the partial genome DNA chip, we compared efficiency of direct and indirect cDNA target labeling methods, and found that the indirect method, using fluorescent-labeled dendrimers, generated a higher hybridization signal-to-noise ratio than the direct method, using cDNA targets labeled by incorporation of fluorescence-labeled nucIeotides during reverse transcription. In addition, to assess the quality of this DNA chip, we analyzed the expression profiles of H. polymorpha cells grown on different carbon sources, such as glucose and methanol, and also those of cells treated with the superoxide­generating drug, menadione. The profiles obtained showed a high-level induction of a set of ORFs involved in methanol metabolism and oxidative stress response in the presence of methanol and menadione, respectively. The results demonstrate the sensitivity and reliability of our arrays to analyze global gene expression changes of H. polymorpha under defined environmental conditions.

Study about the relationship between Chief complaint of pure death patients using medical record information (의무기록 정보를 활용한 순사망환자 주호소 증상과 진단명과의 연관성에 관한연구)

  • Kim, Yong-Ha;Kim, Kwang-Hwan
    • Journal of Digital Convergence
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    • v.13 no.1
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    • pp.407-414
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    • 2015
  • This study was executed to be used as the basic data for the improvement of hospital therapy by analyzing the characteristic of principal diagnosis of pure death patients. 428 pure death patients were selected as study subjects out of 1992 dead patients at K university hospital in Daejeon city for three years in 2011, 2012, 2013, and chi-squared test and fisher's correct tests and canonical correlation analysis were used as analysis methods. In the analysis results about general characteristic and top 4 canonical correlation analysis, pneumonia(J18) of organism unspecified and toxic action(T60) of pesticide showed significant results among the principal diagnosis. In the pneumonia of organism unspecified(J18), significant results were identified with the order of car insurance, ages from 15 to 29, health insurance and medical benefits, and in the toxic action of pesticide(T60), significant results were identified with the order of health insurance, medical benefits, car insurance, ages from 45 to 59, Sejong Chungnam. In conclusion, in order to reduce the death of elderly population, quality improvement in medical service and establishment of emergency medical service delivery system are very important to reduce pure death patients.

Detection of microbial organisms on Apis mellifera L. beehives in palm garden, Eastern Thailand

  • Sirikwan Dokuta;Sumed Yadoung;Peerapong Jeeno;Sayamon Hongjaisee;Phadungkiat Khamnoi;Khanchai Danmek;Jakkrawut Maitip;Bajaree Chuttong;Surat Hongsibsong
    • Journal of Ecology and Environment
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    • v.48 no.1
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    • pp.17-23
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    • 2024
  • Background: Honey bees play a crucial role in pollination and ecological balance. Apis mellifera L. colonies, especially those located in specific geographic regions, such as the palm garden in Eastern Thailand, are susceptible to potential threats from microbial contaminants. Understanding and detecting microbial organisms in these beehives is essential for the preservation of bee health, honey production, and the broader ecosystem. However, the problem of microbial infection and antibiotic-resistant bacteria is more severe and continuously increasing, resulting in a health, economic, and social crisis. The purpose of this study is to determine the prevalence of microorganisms in A. mellifera beehives in palm gardens in Rayong province, Eastern Thailand. Results: Ten swabs in transport media were swabbed and obtained from different parts of each beehive (1 swab per beehive), for a total of 10 hives. Traditional microbial culture-based methods, biochemical tests, and antimicrobial susceptibility (disc-diffusion) tests were used to detect microbial organisms and antibiotic resistance in bacteria. The swab tests from nine beehives resulted in the detection of Gram-positive bacteria (63.64%), Gram-negative bacteria (27.27%), and fungi/yeast (9.09%). These microorganisms are classified as a group of coagulase-negative Staphylococcus spp. and made up 40.91% of the bacteria discovered. Other bacteria found were Coryneform bacteria (13.64%), Pantoea spp. (13.64%), Bacillus spp. (9.09%), yeast (9.09%), glucose non-fermentative Gram-negative bacilli (9.09%), and Pseudomonas spp. (4.55%). However, due to the traditional culture-based and 0biochemical tests usually used to identify the microbial organisms in clinical specimens and the limitation of identifying some environmental microbial species, the results of the antimicrobial susceptibility test cannot reveal if the organism is resistant or susceptible to the drug. Nevertheless, drug-sensitive inhibition zones were formed with each antibiotic agent. Conclusions: Overall, the study supports prevention, healthcare, and public health systems. The contamination of microorganisms in the beehives may affect the quality of honey and other bee products or even the health of the beekeeper. To avoid this kind of contamination, it is therefore necessary to wear personal protective equipment while harvesting honey and other bee products.

Effect of Homofermentative and Heterofermentative Lactic Acid Bacteria on the Quality and Aerobic Stability of Silage : Meta-Analysis (Homo형 발효 및 Hetero형 발효 젖산균의 사용이 사일리지의 품질 및 호기적 안정성에 미치는 효과 : 메타분석)

  • Cho, Sangbuem;Kang, Jung Sun;Cho, Kyung Jin;Lee, Kang Hee;Kwon, Chan Ho;Song, Jaeyong;Lee, Kihwan;Kim, Su Yeon;Kim, Eun Joong
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.34 no.4
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    • pp.247-253
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    • 2014
  • In the silage quality, the process of fermentation and use of micro-organism as starter cultures are crucial. The present study investigated the effect of homo and heterofermentative lactic acid bacteria as a starter culture strain on the silage quality and its aerobic stability using meta-analysis. Total 19 studies were used in the analysis. According to the strains of lactic acid bacteria used, experimental groups were assigned to heterofermentative (HEL), mixture of hetero and homofermentative (HHO), homofermentative (HOL) and various homofermentative (HOM). In each experimental group, standardized result of the treatment (with inoculant) was compared with the control (without inoculant) using risk ratio calculation method. The effect of experimental group was also compared. Different starter culture strains did not influence on silage pH and propionic acid production. However, lactic acid and acetic acid production were significantly (p<0.05) influenced by the start culture strains. HOM showed the greatest lactic acid production and HEL was the lowest. In contrast, HEL showed the greatest in acetic acid production and HOM and HOL were the lowest. In terms of ammonia nitrogen, HHO produced more (p<0.05) than the rest of the treatment. In crude protein and water soluble carbohydrate contents, there were no significant effects among treatments. Different strain of lactic acid bacteria significantly influenced on the effect of aerobic stability (p<0.05). Use of heterofermentative showed greater aerobic stability and the use of homofermentative lactic acid bacteria.

The Research Trend and Social Perceptions Related with the Tap Water in South Korea (수돗물 이용에 대한 국내 연구동향과 사회적 인식)

  • Kim, Ji Yoon;Do, Yuno;Joo, Gea-Jae;Kim, Eunhee;Park, Eun-Young;Lee, Sang-Hyup;Baek, Myeong Su
    • Korean Journal of Ecology and Environment
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    • v.49 no.3
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    • pp.208-214
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    • 2016
  • We analyzed research trend and public perception related with tap water to identify major factors affecting low consumption of tap water. 805 research articles were collected for text mining analysis and 1,000 on-line questionnaires were surveyed to find social variables influencing tap water intake. Based on the word network analysis, research topics were divided into 4 major categories, 1) drinking water quality, 2) water fluoridation, 3) residual chlorine, and 4) micro-organism management. Compared with these major research topics, scientific studies of drinking behavior, or social perception were rather limited. 22.4% of total respondents used tap water as drinking water source, and only 1% drank tap water without further treatments (i.e. boiling, filtering). Experience of quality control report (B=0.392, p=0.046) and level of policy trust (B=1.002, p<0.0001) were influential factors on tap water drinking behavior. Age (B=0.020, p=0.002) and gender (B= - 1.843, p<0.0001) also showed significant difference. To increase the frequency of drinking the tap water by social members, the more scientific information of tap water quality and the water policy management should be clearly shared with social members.

Characteristics of Macro Benthic Community in the Subtidal Zone of Muan Bay on Summer and Health Assessment by using AZTI Marine Biotic Index (AMBI) and Water Quality Index (WQI) (하계 무안만 조하대 저서동물군집 특성 및 AZTI의 해양생물지수(AMBI)와 수질평가지수(WQI)를 이용한 건강성 평가)

  • Oh, Jun Ho;Lee, Kyoung Seon
    • Journal of Marine Life Science
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    • v.7 no.1
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    • pp.21-28
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    • 2022
  • Benthic animals are important indicators in benthic environmental quality assessment. This study investigated the environmental characteristics and the distribution pattern of benthic animals, and assessed the benthic ecosystem using AMBI (AZTI's marine biotic index) and WQI (water quality index) in the subtidal zone of Muan bay. Samplings were collected from 10 stations in the subtidal zone of Muan bay on summer. In the upper area of Muan bay, grain size was finer and organic content was higher than those of in the lower area. The pollution indicator organism such as Musculista senhousia, Theora fragilis and Lumbrineris longifolia were dominant at some stations. The benthic community was distinguished into three groups of upper, center and lower area of Muan bay, and which were coincided with the results by correlation analysis between organic matter content and benthic health assessment (WQI and AMBI). As a result of this study, the health condition of the subtidal zone in Muan bay were good. However, from the results that benthic animals were not evenly distributed, and also the opportunistic species appeared, the load of organic matter in Muan bay seems to be increasing.

Setting Ecological Goals and Success Criteria Items for Ecological Restoration Projects : Focusing on the Coastal Restoration Projects (생태복원사업의 생태적 목표 및 성공 판단기준 항목 설정 : 연안복원사업을 중심으로)

  • Lee, Sukmo;Lee, Dongjoo;Seo, Jinhyeong
    • Journal of the Korean Society for Marine Environment & Energy
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    • v.20 no.1
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    • pp.12-17
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    • 2017
  • This study established ecological goals and success criteria by using results of the coastal ecosystem restoration demand survey. The ecological goals are set for species diversity, regulation of seawater flow, improvement of purification, erosion prevention and habitat provision by ecosystem types. The indicators of success criteria are chosen the number of emergence species and community characteristics of target organism and pertinent items of hydrologic, water quality and sediment environment by ecological goals among the investigation items of tidal flat investigation guideline.

Development of a thermo-stabel ${\beta}-agarase$ from marine organism

  • Lee, Sang-Hyeon
    • 한국생물공학회:학술대회논문집
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    • 2005.04a
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    • pp.31-32
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    • 2005
  • Neoagaro-oligosaccharides are produced only by enzymatic degradation of agarose by ${\beta}-agarase.^{1)}$ Neoagaro-oligosaccharides inhibit the growth of bacteria, slow the rate of degradation of starch, are used as low-calorie additives to improve food quality, and have macrophage-stimulating activity. Furthermore, neoagarobiose is a rare reagent that has both moisturizing effect on skin and whitening effect on melanoma $cells.^{2)}$ An agar-degrading marine bacterium was isolated from the sea water at the northeast coast in Cheju island, Korea. The strain was gram negative, aerobic, and motile rod. The 16S rRNA of the strain had the closest match of 98% homology, with that from Agarivorans albus. On the basis of several phenotypic characters and a phylogenetic analysis, this strain was designated Agarivorans sp. JA-1. In solid agar plate, Agarivorans sp. JA-1 produced a diffusible agarase that caused agar softening around the colonies. Agarivorans sp. JA-1 was cultured for 36 hr in marine broth 2216 (Difco, USA) and the supernatant that containing an extracellular ${\beta}-agarase$ was prepared by centrifugation of culture media. The enzyme exhibited relatively strong activity at $40^{\circ}C$ and was stable up to $60^{\circ}C$. Using PCR primers derived from the ${\beta}-agarase$ gene of Vibrio sp., the gene encoding ${\beta}-agarase$ from Agarivorans sp. JA-1 was cloned and sequenced. The structural gene consists of 2931 bp encoding 976 amino acids with a predicted molecular weight of 107,360 Da. The deduced amino acid sequence showed 99% and 34% homology to $agaA^{2)}$ and $agaB^{2)}$ genes for ${\beta}-agarase$ from Vibrio sp., respectively. The expression plasmid for ${\beta}-agarase$ gene of Agarivorans sp. JA-1 is being constructed and the recombinant enzyme will be biochemically characterized.

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Effect of Particulate Matter on the UV-Disinfection of Virus and Risk Assessment (입자성 물질 농도가 바이러스의 UV-처리와 위해성에 미치는 영향 평가)

  • Shin, Yu-Ri;Yoon, Chun-Gyeong;Rhee, Han-Pil;Lee, Seung-Jae
    • Journal of Korean Society on Water Environment
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    • v.26 no.6
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    • pp.1028-1033
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    • 2010
  • Wastewater reuse for agricultural irrigation needs treatment and control of pathogens to minimize risks to human health and the environment. In order to evaluate the water quality of UV-treated reclaimed water, this study focused on the relationship between micro-pathogens and particulate matters. MS2 was selected as an index organism because it has similar characteristics to human enteric virus and strong resistance to UV disinfection. The turbidity and suspended solid (SS) were selected for test parameters. In this study, it was performed with different UV doses (30 and $60mJ/cm^2$) for estimation of the MS2 inactivation rate using collimated beam batch experiments in the laboratory. The experiment results by turbidity or SS concentration presented that the increased concentration of them lowered MS2 inactivation. At the turbidity (below 4.27 NTU) and SS (below 1.47 mg/L) of the low level range, the inactivation of 60 UV dose is higher than 30 UV dose. However, at the turbidity and SS of the high level, the increasing UV dose did not show apparent increasing the MS2 inactivation. In quantitative microbial risk assessment (QMRA), it can confirm the trend that $P_D$ and turbidity concentrations have positive correlationship at the low concentration, which was also observed in SS. The QMRA can be helpful in communication with public for safe wastewater reuse and be recommended.