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Free Living Amoeba-Bacteria Interactions: Analysis of Escherichia coli Interactions with Nonpathogenic or Pathogenic Free Living Amoeba

  • Jung, Suk-Yul
    • Biomedical Science Letters
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    • v.17 no.1
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    • pp.7-12
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    • 2011
  • Free-living amoebae ingest several kinds of bacteria. In other words, the bacteria can survive within free-living amoeba. To determine how Escherichia coli K1 isolate causing neonatal encephalitis and non-pathogenic K12 interact with free-living amoebae, e.g., Acanthamoeba castellanii (T1), A. astronyxis (T7), Naegleria fowleri, association, invasion and survival assays were performed. To understand pathogenicity of free-living amoebae, in vitro cytotoxicity assay were performed using murine macrophages. T1 destroyed macrophages about 64% but T7 did very few target cells. On the other hand, N. fowleri which needed other growth conditions rather than Acanthamoeba destroyed more than T1 as shown by lactate dehydrogenase (LDH) release assay. In association assays for E. coli binding to amoebae, the T7 exhibited significantly higher association with E. coli, compared with the T1 isolates (P<0.01). Interestingly, N. fowleri exhibited similar percentages of association as T1. Once E. coli bacteria attach or associate with free-living amoeba, they can penetrate into the amoebae. In invasion assays, the K1 (0.67%) within T1 was observed compared with K12 (0%). E. coli K1 and K12 exhibited high association with N. fowleri and bacterial CFU. To determine the fate of E. coli in long-term survival within free-living amoebae, intracellular survival assays were performed by incubating E. coli with free-living amoebae in PBS for 24 h. Intracellular E. coli K1 within T1 (2.5%) and T7 (1.8%) were recovered and grown, while K12 were not found. N. fowleri was not invaded and here it was not recovered.

Genetic Diversity and Molecular Markers in Introduced and Thai Native Apple Snails (Pomacea and Pila)

  • Thaewnon-Ngiw, Bungorn;Klinbunga, Sirawut;Phanwichien, Kantimanee;Sangduen, Nitsri;Lauhachinda, Nitaya;Menasveta, Piamsak
    • BMB Reports
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    • v.37 no.4
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    • pp.493-502
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    • 2004
  • The genetic diversity and species-diagnostic markers in the introduced apple snail, Pomacea canaliculata and in the native Thai apple snails; Pila ampullacea, P. angelica, P. pesmei, and P. polita, were investigated by restriction analysis of COI and are reported for the first time. Twenty-one composite haplotypes showing non-overlapping distributions among species were found. Genetic heterogeneity analysis indicated significant differences between species (P < 0.0001) and within P. pesmei (P < 0.0001) and P. angelica (P < 0.0004). No such heterogeneity was observed in Pomacea canaliculata (P > 0.0036 as modified by the Bonferroni procedure), P. ampullacea (P = 0.0824-1.000) and P. polita (P = 1.0000). A neighbor-joining tree based on genetic distance between pairs of composite haplotypes differentiated all species and indicated that P. angelica and P. pesmei are closely related phylogenetically. In addition, the 16S rDNA of these species was cloned and sequenced. A species-specific PCR for P. canaliculata was successfully developed with a sensitivity of detection of approximately 50 pg of the target DNA template. The amplification of genomic DNA (50 pg and 25 ng) isolated from the fertilized eggs, and juveniles (1, 7, and 15 d after hatching) of Pomacea canaliculata was also successful, and suggested that Pomacea canaliculata and Pila species can be discriminated from the early stages of development.

Probe-based qPCR Assay for Rapid Detection of Predominant Candida glabrata Sequence Type in Korea

  • Bae, Jinyoung;Lee, Kyung Eun;Jin, Hyunwoo
    • Biomedical Science Letters
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    • v.25 no.4
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    • pp.407-416
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    • 2019
  • Recent years have seen an increase in the incidence of candidiasis caused by non-albicans Candida (NAC) species. In fact, C. glabrata is now second only to C. albicans as the most common cause of invasive candidiasis. Therefore, the rapid genotyping specifically for C. glabrata is required for early diagnosis and treatment of candidiasis. A number of genotyping assays have been developed to differentiate C. glabrata sequence types (STs), but they have several limitations. In the previous study, multi-locus sequence typing (MLST) has performed with a total of 101 C. glabrata clinical isolates to analyze the prevalent C. glabrata STs in Korea. A total of 11 different C. glabrata STs were identified and, among them, ST-138 was the most commonly classified. Thus, a novel probe-based quantitative PCR (qPCR) assay was developed and evaluated for rapid and accurate identification of the predominant C. glabrata ST-138 in Korea. Two primer pairs and hybridization probe sets were designed for the amplification of internal transcribed spacer 1 (ITS1) region and TRP1 gene. Analytical sensitivity of the probe-based qPCR assay was 100 ng to 10 pg and 100 ng to 100 pg (per 1 μL), which target ITS1 region and TRP1 gene, respectively. This assay did not react with any other Candida species and bacteria except C. glabrata. Of the 101 clinical isolates, 99 cases (98%) were concordant with MLST results. This novel probe-based qPCR assay proved to be rapid, sensitive, highly specific, reproducible, and cost-effective than other genotyping assay for C. glabrata ST-138 identification.

Isocenter Reproducibility with Mask Fixation System in Stereotactic Radiosurgery (정위 마스크 시스템을 사용한 방사선수술시 회전중심점의 재현성)

  • 이동준;손문준;이기택;최찬영;황금철;황충진
    • Progress in Medical Physics
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    • v.13 no.3
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    • pp.135-138
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    • 2002
  • Fractionated stereotactic radiosurguy (FSRS) requires precise and reproducible patient set up. For these reasons non-invasive mask fixation methods have been used in Linac based FSRS. In this study, we measured and assessed the isocenter reproducibility using a commercial head mask fixation system based on thermoplastic materials. For the verification and the measurement of isocenter deviation a special acrylic brain phantom was designed. The designed phantom has 22 vertical rods and each rod has different lengths. At the end of the 8 rods, the monochromic film is attached and irradiated due to planned target position. Deviations of isocenter were measured separately for each direction. The mean deviation showed 0.4 mm in longitudinal direction, 0.1 mm in the lateral direction, 0.1 mm in the anterior-posterior direction of the treatment couch. The data demonstrates the high accuracy and reproducibility. This study reinforces previous literature published.

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The Differentiation of the Olfactory Placode in Xenopus (Xenopus 후각원판의 분화)

  • 구혜영
    • The Korean Journal of Zoology
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    • v.39 no.1
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    • pp.54-64
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    • 1996
  • Normal development of the olfactory placode was studied to describe the sequence of events involved in the development of the olfactory placode. It has been primarily concerned with the morphological differentiation of the sensory neurons, their initial growth, maturation patterns and the contacts of their axons with the primitive prosencephalic vesicle. The olfactory organ first appears at stage 23 as a paired thickening of the two ectodermal layers: the superficial non-nervous layer (NNL) and the inner nervous layer (NL). Receptor cells differentiate from the NL and the supporting cells develop from the NNL. After stage 26 the placodal cells begin to migrate toward the epithelial surface between the NNL cells and their apical processes reach the surface at stage 28. As the apical process reaches the epithelial surface, basal processes (presumptive axons) sprout from the base of the NL cells at stage 29/30. They penetrate the underlying telencephalon by stage 32. Sensory synaptic contacts first appear at stage 37/38. Some placodal cells remain at the olfactory epithelium as basal cells while other placodal cells differentiate into olfactory neurons. The results confirmed that neurons originate exclusively from the nervous layer of the ectoderm while supporting cells originate from the NNL layer. The results also indicate that the development of olfactory neuron is independent of information from the target ftssue.

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Radiography with Low Energy Protons Generated from Ultraintense Laser-plasma Interactions

  • Choi, Chang-Il;Lee, Dong-Hoon;Kang, Byoung-Hwi;Kim, Yong-Kyun;Choi, Il-Woo;Sung, Jae-Hee;Kim, Chul-Min;Kim, I-Jong;Yu, Tae-Jun;Lee, Seong-Ku;Pae, Ki-Hong;Hafz, Nasr;Jeong, Tae-Moon;Ko, Do-Kyeong;Lee, Jong-Min
    • Journal of the Optical Society of Korea
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    • v.13 no.1
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    • pp.28-32
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    • 2009
  • In order to obtain high quality images of thin objects, we performed an experiment of proton radiography by using low energy protons generated from the interaction of an ultrashort ultraintense laser with solid targets. The protons were produced from a thin polyimide target irradiated by the laser pulse, and their maximum energy was estimated at up to 1.8 MeV. A CR-39 nuclear track detector was used as a proton radiography screen. The proton images were obtained by using an optical microscope and the spatial resolution was evaluated by a Modulation Transfer Function (MTF). We have achieved about $10\;{\mu}m$ spatial resolution of images. The obtained spatial resolution shows about $4{\sim}5$ times better value than the conventional X-ray radiography for inspection or non-destructive test (NDT) purpose.

Potent Inhibition of Human Cytochrome P450 1 Enzymes by Dimethoxyphenylvinyl Thiophene

  • Lee, Sang-Kwang;Kim, Yongmo;Kim, Mie-Young;Kim, Sanghee;Chun, Young-Jin
    • Archives of Pharmacal Research
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    • v.27 no.2
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    • pp.199-205
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    • 2004
  • Cytochrome P450 (P450) 1 enzymes such as P450 1A1, 1A2, and 181 are known to be involved in the oxidative metabolism of various procarcinogens and are regarded as important target enzymes for cancer chemoprevention. Previously, several hydroxystilbene compounds were reported to inhibit P450 1 enzymes and were rated as candidate chemopreventive agents. In this study, we investigated the inhibitory effect of 2-[2-(3,5-dimethoxyphenyl)vinyl]-thiophene (DMPVT), produced from the chemical modification of oxyresveratrol, on the activities of P450 1 enzymes. The inhibitory potential by DMPVT on the P450 1 enzyme activity was evaluated with the Escherichia coli membranes of the recombinant human cytochrome P450 1A1, 1A2, or 1B1 coexpressed with human NADPH-P450 reductase. DMPVT significantly inhibited ethoxyresorufin O-deethylation (EROD) activities with $IC_{50}$ values of 61, 11, and 2 nM for 1A1, 1A2, and 1B1, respectively. The EROO activity in OMBA-treated rat lung microsomes was also significantly inhibited by OMPVT in a dose-dependent manner. The modes of inhibition by DMPVT were non-competitive for all three P450 enzymes. The inhibition of P450 1B1-mediated EROD activity by OMPVT did not show the irreversible mechanism-based effect. The loss of EROD activity in P450 1B1 with OMPVT incubation was not blocked by treatment with the trapping agents such as glutathione, N-acetylcysteine, or dithiothreitol. Taken together, the results suggested DMPVT to be a strong noncompetitive inhibitor of human P450 1 enzymes that should be considered as a good candidate for a cancer chemopreventive agent in humans.

Study on Consumers' Restaurant Selection Criteria by Using Conjoint Analysis (외식 소비자의 레스토랑 선택속성 및 속성가치에 대한 선호도 조사 연구 -컨조인트 분석을 이용하여-)

  • Hong, Jong-Sook;Jeon, Ji-Young;Kim, Young-Sook
    • Journal of the East Asian Society of Dietary Life
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    • v.22 no.2
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    • pp.315-321
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    • 2012
  • In this study, the product attributes that give customers the estimated benefits and products that can predict the customer's choice conjoint analysis techniques to identify the restaurant affinity markets a new dining concept was to develop. Questionnaire for this study of 400 non-response is negative and insincere characters, except for the final analysis, the questionnaire Part 309 was the target. Conjoint model used in this study Pearson's R is 0.928 ($p$<0.000), Kendall's tau is 0.750 ($p$<0.000) with an orthogonal plan was well suited for profiling attributes are extracted 16. Part of the relative importance of the value of the property to determine the result of analyzing the properties that are most important at the level of the respondents of the induct (38.46%), and followed by price (30.52%), Atmosphere (18.28%), and Exclusive space (12.73%) was followed. Portion of the property value for each analysis among industry preference for the Italian food was highest, a nature-friendly interior atmosphere had the highest affinity Average per price at 10,000 won~30,000 won or less than the amount of affinity was higher location of the restaurant alone, showed that space preferred. Through simulation in a virtual seafood restaurant nature-friendly image, average price per person ranging from 10,000 to 30,000won at an exclusive restaurant was most preferred.

Efficient Non-overlapping Aircraft Datablock Relocation Algorithm (항공기 데이터블록의 효율적 비중첩 재배치 알고리즘)

  • Jeong, Jae Hyup;Won, In Su;Yang, Hun Jun;Jeong, Dong Seok
    • Journal of the Institute of Electronics and Information Engineers
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    • v.51 no.11
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    • pp.117-126
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    • 2014
  • In this paper, we propose an efficient algorithm which can relocate the datablock of an aircraft when it is overlapped. If the datablock which represents the aircraft information in the control display is overlapped, relocation without overlapping is necessary because it is difficult to control the air traffic in this situation. The proposed algorithm relocates the data block with minimum movement by considering the characteristics of datablock. The moving distance of minimum movement is calculated using the height or width of rectangle which is created during overlapping. And the moving direction of minimum movement is calculated by considering the directivity of the datablock. When the distance between the target symbol and datablock is distant enough, the relocation is carried out using the existing algorithm as a special case. The proposed algorithm shows improved performance in comparison with the existing algorithm due to the fact that it considers many different cases of the datablock.

Colossal magnetoresistance of double-ordered perovskite $Sr_{2}FeMoO_{6}$ ceramics and sputter-deposited films ($Sr_{2}FeMoO_{6}$ 소결체와 스퍼터링법으로 제조된 박막의 초거대자기저항현상에 관한 연구)

  • 이원종;장원위
    • Journal of the Korean Crystal Growth and Crystal Technology
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    • v.12 no.1
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    • pp.36-41
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    • 2002
  • Abstract The stoichiometric and double-ordered perovskite $Sr_2FeMoO_6$ (SFMO) polycrystalline ceramics were fabricated by sintering at above $900^{\circ}C$ in $H_2$(5%)/Ar reductive ambient. SMO polycrystals showed good ferromagnetic properties andmagnetrotesistqnce ratios of about 15 % at 8K and 3 % at room temperature. Amorphous SFMO thin films were deposited on $LaA1O_3$ and $SrTiO_3$ single crystal substrates using rf sputtering method with the SFMO polycrystalline ceramic target. Double-ordered perovskite polycrystalline SFMO thin films were fabricated by solid state crystallization by annealing the deposited amorphous films at above $680^{\circ}C$ in $H_2$(5%)/Ar reductive ambient. SFMO thin films exhibited ferromagnetic behavior. Their magnetroresistance ratios, however, were only 0.3~0.5% at 8K and disappeared with increasing the measuring temperature. This was attributed to the absence of magnetic spin tunneling between grains due to the porous structure and non-stoichiometric composition of the deposited films.