• Korean journal of applied entomology
• /
• v.62 no.1
• /
• pp.9-13
• /
• 2023

The genus Phaedrotoma Foerster, 1862 (Hymenoptera: Braconidae: Opiinae) parasitize in larvae of flies, Tephritidae, Agromyzidae, Ephydridae, Anthomyiidae, Scathophagidae, and Drosophilidae, of which 12 species are recorded in South Korea. As results of our survey, Phaedrotoma rugulifera Li et al. (2013) and Phaedrotoma vermiculifera Li et al. (2013) are reported for the first time in South Korea. Those specimens were collected by sweeping. Descriptions, and diagnostic illustrations of P. rugulifera and P. vermiculifera are provided.

• The Plant Pathology Journal
• /
• v.40 no.4
• /
• pp.399-407
• /
• 2024

Dieback disease in mango trees has been observed in Indonesia, particularly in Java Island, with the causal agent remaining unidentified. One of the important pathogens that are responsible for causing mango dieback is Colletotrichum. Field surveys were conducted in various mango cultivating areas in Java Island, Indonesia to assess prevalence of Colletotrichum as dieback disease pathogen. Eleven Colletotrichum isolates were recovered from symptomatic dieback twigs and morphologically characterized. Genetic diversity fingerprint analysis was carried out using rep-PCR. Phylogenetic analysis identified isolates as belonging to Colletotrichum asianum and Colletotrichum cairnsense using partial sequences of four gene regions, including ITS, ACT, GAPDH, and TUB2. Pathogenicity tests on mango seedlings cv. Arumanis showed that all fungal isolates were responsible for causing dieback symptoms. Subsequently, symptomatic tissue was reisolated to fulfill Koch's Postulate. This study represented new funding for two species of Colletotrichum causing mango dieback in Indonesia.

• Mycobiology
• /
• v.45 no.1
• /
• pp.1-8
• /
• 2017

Despite the huge worldwide diversity of Trichoderma (Hypocreaceae, Ascomycota), only about 22 species have been reported in Korea. Thus, between 2013 and 2015, soil-derived Trichoderma spp. were isolated to reveal the diversity of Korean Trichoderma. Phylogenetic analysis of translation elongation factor 1 alpha gene was used for identification. Among the soil-derived Trichoderma, Trichoderma albolutescens, T. asperelloides, T. orientale, T. spirale, and T. tomentosum have not been previously reported in Korea. Thus, we report the five Trichoderma species as new in Korea with morphological descriptions and images.

• Journal of Microbiology and Biotechnology
• /
• v.20 no.8
• /
• pp.1163-1178
• /
• 2010

Plasmids play important roles in horizontal gene transfer among Vibrionaceae, but surprisingly little is known about their replication and incompatibility systems. In this study, we successfully developed a bioinformatics-assisted strategy of experimental identification of seven Vibrio plasmid replicons. Comparative sequences analysis of the seven Vibrio plasmid replicons obtained in this study together with eight published Vibrionaceae plasmid sequences revealed replication-participating elements involved in the ColE1 mode of replication initiation and regulation. Like plasmid ColE1, these Vibrionaceae plasmids encode two RNA species (the primer RNA and the antisense RNA) for replication initiation and regulation, and as a result, the 15 Vibrionaceae plasmids were designated as ColE1-like Vibrionaceae (CLV) plasmids. Two subgroups were obtained for the 15 CLV plasmids, based on comparison of replicon organization and phylogenetic analysis of replication regions. Coexistence of CLV plasmids were demonstrated by direct sequencing analysis and Southern hybridization, strongly suggesting that the incompatibility of CLV plasmids is determined mainly by the RNA I species like the ColE1-like plasmids. Sequences resembling the conserved Xer recombination sites were also identified on the CLV plasmids, indicating that the CLV plasmids probably use the host site-specific recombination system for multimer resolution like that used by ColE1-like plasmids. All the results indicated that the 15 plasmids form a new ColE1-like group, providing a basis for the rapid characterization and classification of Vibrionaceae plasmids.

• Journal of Ginseng Research
• /
• v.44 no.5
• /
• pp.680-689
• /
• 2020

Background: Peptides have diverse and important physiological roles in plants and are ideal markers for species identification. It is unclear whether there are specific peptides in Panax quinquefolius L. (PQ). The aims of this study were to identify Quinetides, a series of diverse posttranslational modified native peptides of the ribonuclease-like storage protein (ginseng major protein), from PQ to explore novel peptide markers and develop a new method to distinguish PQ from Panax ginseng. Methods: We used different fragmentation modes in the LTQ Orbitrap analysis to identify the enriched Quinetide targets of PQ, and we discovered Quinetide markers of PQ and P. ginseng using ultrahigh-performance liquid chromatography-quadrupole time-of-flight mass spectrometry analysis. These "peptide markers" were validated by simultaneously monitoring Rf and F11 as standard ginsenosides. Results: We discovered 100 Quinetides of PQ with various post-translational modifications (PTMs), including a series of glycopeptides, all of which originated from the protein ginseng major protein. We effectively distinguished PQ from P. ginseng using new "peptide markers." Four unique peptides (Quinetides TP6 and TP7 as markers of PQ and Quinetides TP8 and TP9 as markers of P. ginseng) and their associated glycosylation products were discovered in PQ and P. ginseng. Conclusion: We provide specific information on PQ peptides and propose the clinical application of peptide markers to distinguish PQ from P. ginseng.

• Korean Journal of Veterinary Research
• /
• v.50 no.1
• /
• pp.71-74
• /
• 2010

A trematode species belonging to the genus Prosthogonimus (family: Prosthogonimidae) was collected in August, 2004 from the bursa of Fabricius of a single Little Grebe, Tachybaptus ruficollis, caught in Chuncheon, Korea. Five specimens were collected in total and fluke morphology was examined under using a light microscope. The average parasite size was 5.6 ${\times}$ 3.2 mm (length ${\times}$ width; based on 4 specimens). The genital pore was located on the anterior right margin of the oral sucker. The cirrus sac was strongly sinuous and extended beyond the intestinal bifurcation to the ventral sucker. The prepharynx was extremely short and the pharynx was small. The vitellaria consisted of 6 follicle bunches and extended from the ventral sucker to the posterior of the testes. Finally, the uterus filled the body cavity posterior to the testes. In addition, there were no heavy slings occurred anterior to the testes. Based on these morphological characteristics, the parasites were identified as P. cuneatus. The discovery of P. cuneatus within a Little Grebe constitutes a new host identification and a new geographical record. This is the first reported case of Prosthogonimus infection within wild birds in Korea.

• Korean Journal of Fisheries and Aquatic Sciences
• /
• v.54 no.4
• /
• pp.568-573
• /
• 2021

A single leptocephalus specimen of Albula glossodonta belonging to the family Albulidae under the order Albuliformes, was collected from the southern sea of Korea in May 21, 2019. This species is distinguished from A. vulpes in the number of melanophores at the base of the caudal fin. In addition, our specimen was readily distinguished from A. argentea in having no melanophores on the operculum, at the base of the dorsal fin and in front of the pectoral fin. Also it was well distinguished from A. gilberti in having no melanophores on the operculum, in front of the pectoral fin and on the lateral body. A molecular analysis based on 467 bp sequences of the mitochondrial DNA 16S rRNA shows that the leptocephalus is well matched to A. glossodonta adult (K2P distance=0.002). We report the first occurrence of A. glossodonta leptocephalus in the Korean waters, and propose it's new Korean name, "Nam-bang-yeoeul-myeol".

• Mass Spectrometry Letters
• /
• v.9 no.4
• /
• pp.91-94
• /
• 2018

Bilin tetrapyrroles are metabolic products of the breakdown of porphyrins within a species. In the case of mammals, these bilins are formed by the catabolism of heme and can be utilized as either biomarkers in disease or as an indicator of human waste contamination. Although a small subset of bilin tandem mass spectrometry reports exist, limited data is available in online databases for their fragmentation. The use of fragmentation data is important for metabolomics analyses to determine the identity of compounds detected within a sample. Therefore, in this study, the fragmentation of bilins generated by positive ion mode electrospray ionization is examined by collision-induced dissociation (CID) as a function of collision energy on an FT-ICR MS. The use of the FT-ICR MS allows for high mass accuracy measurements, and thus the formulas of resultant product ions can be ascertained. Based on our observations, fragmentation behavior for hemin, biliverdin and its dimethyl ester, phycocyanobilin, bilirubin, bilirubin conjugate, mesobilirubin, urobilin, and stercobilin are discussed in the context of the molecular structure and collision energy. This report provides insight into the identification of structures within this class of molecules for untargeted analyses.

• Korean journal of applied entomology
• /
• v.59 no.4
• /
• pp.357-360
• /
• 2020

We identified Jolcham oak (Quercus serrata Thunb. ex Murray) (Fagales: Fagaceae) as a new host tree for Callipogon relictus Semenov (Coleoptera: Cerambycidae), a Korean natural monument and an endangered species, in Gwangneung Forest, South Korea. We herein report the morphometric characteristics of C. relictus larvae found in a Q. serrata tree and provide a revised list of C. relictus hosts.

• Microbiology and Biotechnology Letters
• /
• v.2 no.1
• /
• pp.1-7
• /
• 1974

For the purpose of producing cellulosic single-cell protein from the agricultural wastes, 172 strains of cellulose-assimilating bacteria were isolated from 102 samples of rotten woods, compost soils, soils and so on by the enrichment culture technique. The isolates were examined for their ability to utilize cellulose as carbon source, and then six strains were screened by their strong cellulose assimilating ability and identified as follows: 1. Among six strains of bacteria screened, five strains were identified as species belonged to the genus Cellulomonas and the remainder to the genus of Sporocytophaga. 2. The isolated Sporocytophaga species was identified as S. ellipsosporn because it has a ellipsoidal microcyst. 3. The isolated Cellulomonas species were identical to a strain of C. fimi, C. aurcgena, C. gelida, respectively and two strains to C. flavigena. 4. The isolated C. aurogena was proved to be a new variety becauuse it has different characteristics of assimilating pentoses such as arabinose and xylose from the strain discribed in Bergey's Manual.