• Title/Summary/Keyword: Native Function

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Conformational Switch and Functional Regulation of Proteins (단백질의 구조 전환과 기능 조절)

  • 유명희
    • Electrical & Electronic Materials
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    • v.14 no.12
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    • pp.3-6
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    • 2001
  • In common globular proteins, the native form is n its most stable state. However, the native form of inhibitory serpins (serine protease inhibitors) and some viral membrane fusion proteins is in a metastable state. Metastability in these proteins is critical to their biological functions. Our previous studies revealed that unusual interactions, such as side-chain overpacking, buried polar groups, surface hydrophobic pockets, ad internal cavities are the structural basis of the native metastability. To understand the mechanism by which these structural defects regulate protein functions, cavity-filling mutations of $\alpha$1-antitrypsin, a prototype serpin, were characterized. Increasing conformational stability is correlated with decreasing inhibitory activity. Moreover, the activity loss appears to correlate with the decrease in the rate of the conformational switch during complex formation with a target protease. We also increased the stability of $\alpha$1-antitrypsin greatly via combining various stabilizing single amino acid substitutions that were distributed throughout the molecule. The results showed that a substantial increase of stability, over 13 kcal/mol, affected the inhibitory activity with a correlation of 11% activity loss per kcal/mol. The results strongly suggest that the native metastability of proteins is indeed a structural design that regulates protein functions and that the native strain of $\alpha$1-antitrypsin distributed throughout the molecule regulates the inhibitory function in a concerted manner.

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Conformational Switch and Functional Regulation of Proteins (단백질의 구조 전환과 기능 조절)

  • 유명희
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 2001.11a
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    • pp.3-6
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    • 2001
  • In common globular proteins, the native form is in its most stable state. However, the native form of inhibitory serpins (serine protease inhibitors) and some viral membrane fusion proteins is in a metastable state. Metastability in these Proteins is critical to their biological functions. Our previous studies revealed that unusual interactions, such as side-chain overpacking, buried polar groups, surface hydrophobic pockets, and internal cavities are the structural basis of the native metastability. To understand the mechanism by which these structural defects regulate protein functions, cavity-filling mutations of ${\alpha}$1-antitrypsin, a prototype serpin, were characterized. Increasing conformational stability is correlated with decreasing inhibitory activity. Moreover, the activity loss appears to correlate with the decrease in the rate of the conformational switch during complex formation with a target protease. We also increased the stability of ${\alpha}$1-antitrypsin greatly via combining various stabilizing single amino acid substitutions that were distributed throughout the molecule. The results showed that a substantial increase of stability, over 13 kcal/mol, affected the inhibitory activity with a correlation of 11% activity loss per kcal/mol. The results strongly suggest that the native metastability of proteins is indeed a structural design that regulates protein functions and that the native strain of e 1-antitrypsin distributed throughout the molecule regulates the inhibitory function in a concerted manner.

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On the Role of the Phatic Function of Intonation in Russian (러시아어 발화시 억양의 역할)

  • Park, Kun-Woo
    • Speech Sciences
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    • v.4 no.1
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    • pp.81-89
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    • 1998
  • This paper investigates the phatic function of intonation in Russian by recording and analysing 11 female native speakers of standard Moscow Russian. This paper shows that differences in intonation pattern of a sentence are associated with differences in degree of listener's involvement in the speech. Intonation pattern of an utterance having phatic function appears to be determined by 1) the speaker's readiness to talk to evoke the listener's attention ; 2) the speaker's intention to continue the communication. Some emphasis is placed on the relationship between intonation pattern of an utterance and speaker-listener interaction.

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CHARACTERIZATION OF A HUMAN $\alpha_1$-ANTITRYPSIN VARIANT THAT IS AS STABLE AS OVALBUMIN BUT RETAINS INHIBITORY ACTIVITY

  • Lee, Kee-Nyung;Yu, Myeong-Hee
    • Proceedings of the Korean Biophysical Society Conference
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    • 1996.07a
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    • pp.14-14
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    • 1996
  • The metastable native state of proteins plays an important role in regulating biological functions. The native strain of serpins (serine protease inhibitors) are considered to be crucial for the inhibitory function. Several thermostable mutations of human $\alpha$$_1$-antitrypsin, a prototype inhibitory serpin, were identified in a systematic search targeted at the hydrophobic core of the molecule [Nature structural biology, vol. 3, no. 6, 497-500(1996)]. (omitted)

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Regulatory Role of the Serpin Strain

  • Seo, Eun-Joo;Yu, Myeong-Hee
    • Proceedings of the Korean Biophysical Society Conference
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    • 2002.06b
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    • pp.30-30
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    • 2002
  • The native forms of common globular proteins are in their most stable state but the native forms of plasma serpins (serine protease inhibitors) show high-energy state interactions. The high-energy state strain of a ${\alpha}$$_1$-antitrypsin, a prototype serpin, is distributed throughout the whole molecule, but the strain that regulates the function directly appears to be localized in the region where the reactive site loop is inserted during complex formation with a target protease.(omitted)

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Healing through Storytelling: Linda Hogan's The Woman Who Watches Over the World (이야기를 통한 치유: 린다 호건의 『세상을 지켜보는 여자: 한 원주민의 회고록』)

  • Chun, Sehjae
    • English & American cultural studies
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    • v.18 no.1
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    • pp.1-21
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    • 2018
  • In Woman Watches over the World, Linda Hogan explores the broken identity of herself and her family, the issue of the poverty and the identity crisis, the alcoholism, prevalent in the Native American community and their silenced history. Previous studies have claimed that her memoir contributes to the restoration of Native American identity and history by accusing the violence of white culture, and seeks to recognize a dialogue between native culture and white mainstream culture as well. However they seem to overlook the complicated relations among story, identity, body and nature, to which Hogan as a multi-binded storyteller resorts as a way to break the silence of herself and her tribe for healing. Her own story, as a way to break the silence, becomes the formative drive to reveal the silenced history of her own tribe to lead the young generation to the future. She also understands the formative function of the story, which becomes the vehicle for embodying and connecting themselves to nature. To her, healing lies in the restoration of sympathetic relationship with nature. History, as a type of story, can be made up or mistold just like a story. There may be a blind spot where one can not assess what is true. In spite of the vision of the parallel worlds of the two cultures she presents, there seems to be no immediate solution to the discrimination against the Native American, poverty, identity crisis, and environmental problems which the Native American community faces. However, it can be said that her memoir serves as a rudder by presenting a direction to not only the Native American but also to readers in other cultures in its quest for practical possibilities for the future.

Functional Role of the Native Strain that is Distributed throughout an <$\alpha_1$-antitrypsin

  • Seo, Eun-Joo;Yu, Myeong-Hee
    • Proceedings of the Korean Biophysical Society Conference
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    • 2001.06a
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    • pp.31-31
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    • 2001
  • The native strain of serpins (serine protease inhibitors) has been recognized as a mechanism of biological regulation. Indeed, some stabilizing single residue mutations of human $\alpha$$_1$-antitrypsin, a prototype serpin, relieved local strain and caused the loss of inhibitory activity. The native strain of $\alpha$$_1$-antitrypsin is distributed throughout the whole molecule, but the strain that regulates the function directly is highly localized in the regions that appear to be mobilized during complex formation with a target protease.(omitted)

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SOBOLEV TYPE APPROXIMATION ORDER BY SCATTERED SHIFTS OF A RADIAL BASIS FUNCTION

  • Yoon, Jung-Ho
    • Journal of applied mathematics & informatics
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    • v.23 no.1_2
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    • pp.435-443
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    • 2007
  • An important approach towards solving the scattered data problem is by using radial basis functions. However, for a large class of smooth basis functions such as Gaussians, the existing theories guarantee the interpolant to approximate well only for a very small class of very smooth approximate which is the so-called 'native' space. The approximands f need to be extremely smooth. Hence, the purpose of this paper is to study approximation by a scattered shifts of a radial basis functions. We provide error estimates on larger spaces, especially on the homogeneous Sobolev spaces.

Assessment of cryopreserved sperm functions of Korean native brindled cattle (Chikso) from different region research centers of Korea

  • Ma, Lei;Jung, Dae-Jin;Jung, Eun-Ju;Lee, Woo-Jin;Hwang, Ju-Mi;Bae, Jeong-Won;Kim, Dae-Hyun;Yi, Jun Koo;Lee, Sang Moo;Ha, Jae Jung;Kwon, Woo-Sung
    • Journal of Animal Reproduction and Biotechnology
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    • v.36 no.2
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    • pp.106-115
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    • 2021
  • Sperm cryopreservation is an important method of assisted reproductive techniques and storing genetic resources. It plays a vital role in genetic improvement, livestock industrial preservation of endangered species, and clinical practice. Consequently, the cryopreservation technique is well organized through various studies, especially on Korean native cattle (Hanwoo). However, the cryopreservation technique of Korean native brindled cattle, which is one of the native cattle species in Korea, is not well organized. Therefore, it is necessary to develop a Supplementary Table technique for the cryopreservation of Korean native brindled cattle. For this purpose, it is important to first evaluate the quality of the currently produced cryopreserved sperm of Korean native brindled cattle. In this study, we randomly selected 72 individual Korean native brindled cattle semen samples collected from 8 different region research centers and used them to evaluate sperm functions. We focused on the quality evaluation of cryopreserved Korean native brindled cattle semen following the measurement of motion kinematics, capacitation status, intracellular ATP level, sperm motility, and cell viability. Then, the values of each of the eight groups were derived from various sperm parameters of nine individual samples, including sperm motility, kinematics, cellular motility, and intracellular ATP levels, which were used to compare and evaluate sperm function. Overall, differences in various sperm parameters were observed between most of the research centers. Particularly, the deviations of motility and motion kinematics were high according to the sample. Therefore, we suggest that it is necessary to develop a standard method for the cryopreservation of Korean native brindled cattle semen. We also suggest the need for sperm quality evaluation of the cryopreserved semen of Korean native brindled cattle before using artificial insemination to attain a high fertility rate.

Design and Implementation of HAL and Java API for Embedded System (임베디드 시스템을 위한 HAL과 JAVA API 설계 및 구현)

  • Lee, Jin-Kwan;Lee, Dae-Hyung;Jung, Kyu-Cheol;Lee, Jong-Chan;Park, Ki-Hong
    • Convergence Security Journal
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    • v.8 no.1
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    • pp.57-65
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    • 2008
  • The implement of JAVA API for supporting the embedded system is capable of developing the object oriented system with code reuse because the developer is able to use JAVA in the embedded system. The system dependant parts for implementing JAVA API are realized from a native function. In this paper, we devide JAVA API into the platform-independent JAVA part and platform-dependent native part for the implementation of JAVA API to manage the linux based embedded system devices, and focus on the control of the embedded system devices using JAVA API.

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