• Title/Summary/Keyword: NMR study

Search Result 1,355, Processing Time 0.023 seconds

A Study of Azo-Hydrazone Tautomerism in 3-Phenyl-4-arylazo-5-isozaolones by $^H-NMR$ spectra of $^{15}N-labeled$ Compounds and HMO Method

  • Shawali, Ahmad S.;Salkaabi, harifia S.;Abdallah, Magda A.
    • Archives of Pharmacal Research
    • /
    • 제14권3호
    • /
    • pp.237-241
    • /
    • 1991
  • The tautomerism in 3-phenyl-4-arylazo-5-isoxazolones 1 was examined by $^1H-NMR$ spectra of $^15N-labeled$ compound and by HMO method. Both spectra data $(^1H-NMR\;and\;IR)$ and bonding energies are in support of the assignment of the hydrazone structure to such compounds. It is further shown that intermolecular and intramolecular hydrogen bondings favor the hydrazone tautomer.

  • PDF

Proper NMR methods for studying RNA thermometers

  • Kim, Won-Je;Kim, Nak-Kyoon
    • 한국자기공명학회논문지
    • /
    • 제19권3호
    • /
    • pp.143-148
    • /
    • 2015
  • In some pathogenic bacteria, there are RNA thermometers, which regulate the production of virulence associated factors or heat shock proteins depending on temperature changes. Like a riboswitches, RNA thermometers are located in the 5'-untranslated region and involved translational gene regulatory mechanism. RNA thermometers block the ribosome-binding site and start codon area under the $37^{\circ}C$ within their secondary structure. After bacterial infection, increased the temperature in the host causes conformations changes of RNA, and the ribosome-binding site is exposed for translational initiation. Because structural differences between open and closed forms of RNA thermometers are mainly mediated by base pairing changes, NMR spectroscopy is a very useful method to study these thermodynamically changing RNA structure. In this review, we briefly provide a fundamental function of RNA thermometers, and also suggest a proper NMR experiments for studying RNA thermometers.

Application of Carbon-13 NMR spectroscopy to the chemistry of natural products

  • Yamasaki, Kazuo
    • Archives of Pharmacal Research
    • /
    • 제3권1호
    • /
    • pp.57-64
    • /
    • 1980
  • Carbon-13 NMR spectroscopy(abbreviated CMR) is an extremely powerful strategy for the study of natural organic molecules. The information derivable from CMR is often complementary to that obtianed form proton NMR spectroscopy (PMR). Because of low natural abundance of $^{13}C$ nucleus (1.1%) coupled with low inherent sensitivity relative to $^{1}H$ (about 1/64), CMR experiment is approximately 6000 times less sensitive than PMR. Despite of this, now it is possible to measure CMR of small amount of compound by the development of three significant ingenious techniques, i. e. a) computer time-averaging, b) wide-band (or noise modulated) proton decoupling, and c) pulsed Fourier transform (FT) NMR : For general recognition of CMR, its fundamental aspects of CMR are briefly reviewed.

  • PDF

Conjugated Oxime의 立體構造에 關한 硏究 (第1報). 2-Butenedialdioxime의 合成 및 NMR에 依한 cis-Isomer의 Conformation 決定 (Structural Studies on Conjugated Oximes (I). The Syntheses of 2-Butenedialdioximes, and the Conformational Study of their cis-Isomer by NMR)

  • 홍영석;이학기;박병각
    • 대한화학회지
    • /
    • 제19권1호
    • /
    • pp.21-33
    • /
    • 1975
  • 매우 不安定한 中間生成物인 2-butenedial을 거쳐서 cis- 및 trans-2-utenedialdioxime을 合成하고, cis-이성질체의 형태(conformation)를 決定하였다. 1,4-dideutero- 및 1-deutero-cis-2-butenedialdioxime의 NMR 解析에 依해서 目的物의 형태가 아래와 같은 非對稱構造임을 밝혔다.

  • PDF

HR-MAS NMR Technique for Metabolic Profiling of Powdery Ginseng

  • Yoon, Dahye;Jo, Ick-Hyun;Kim, Suhkmann
    • 한국자기공명학회논문지
    • /
    • 제20권3호
    • /
    • pp.82-86
    • /
    • 2016
  • Ginseng is used as a medicinal ingredient. The quality control of species, age, origin and manufacturing process is important. The metabolome of ginseng about quality was studied in many reports. Almost studies carried out the extract of ginseng, however, the reproducibility cannot be obtained using extracted sample. In this study, powdery ginseng samples were analyzed using high resolution-magic angle spinning nuclear magnetic resonance (HR-MAS NMR)-based metabolomics except extraction step. Sample was measured three times using 600 MHz NMR spectrometer equipped with nano probe. Reproducibility can be enhanced using this method and the metabolic profiles of ginseng were identified and quantified.

NMR Study of Poly(γ-Glutamic Acid)Hydrogels Prepared by γ-Irradiation : Characterization of Bond Formation and Scission

  • 한옥희;최혁준
    • Bulletin of the Korean Chemical Society
    • /
    • 제20권8호
    • /
    • pp.921-924
    • /
    • 1999
  • Hydrogels were prepared from poly( Υ-glutamic acid) (PGA) solution by g-irradiation of 90 kGy and 170 kGy. The hydrogels were more cross-linked with a higher dosage g-irradiation and completely hydrolyzed at 85℃ within 4 hours resulting in homogeneous solution. NMR techniques were employed to clarify chemical bond formation and scission involved during γ-irradiation and hydrolysis. Characterization of these samples was carried out by taking both liquid state and solid state NMR spectra of PGA and hydrolyzed hydrogels and comparison of these spectra with the solid state NMR spectra of hydrogels. Our results indicate that complicated chemical bond formation and scission have occurred during hydrolysis and γ-irradiation. The samples prepared with higher dosage of γ-irradiation showed more diverse chemical bond formation and scission.

$^{11}B $Nutation NMR Study of Powdered Borosilicates

  • 우애자;한덕영;양경화
    • Bulletin of the Korean Chemical Society
    • /
    • 제19권5호
    • /
    • pp.519-524
    • /
    • 1998
  • In this work, we applied the 1D 11B nutation NMR method for the analysis of the local structural environments in powdered borosilicates (SiO2-B2O3). Spin dynamics during a rf irradiation for spin I=3/2 was analytically calculated with a density matrix formalism. Spectral simulation programs were written in MATLAB on a PC. Two borosilicates prepared by the sol-gel process at different stabilization temperature were used for the 1D 11B nutation NMR experiment. The 11B NMR parameters, quadrupole coupling constants (e2qQ/h) and asymmetry parameters (η), for each borosilicate were extracted from the nonlinear least-squares fitting. The effects of heat treatments on the local structures of boron sites in borosilicates were discussed.

1D Proton NMR Spectroscopic Determination of Ethanol and Ethyl Glucuronide in Human Urine

  • Kim, Siwon;Lee, Minji;Yoon, Dahye;Lee, Dong-Kye;Choi, Hye-Jin;Kim, Suhkmann
    • Bulletin of the Korean Chemical Society
    • /
    • 제34권8호
    • /
    • pp.2413-2418
    • /
    • 2013
  • Forensic and legal medicine require reliable data to indicate excessive alcohol consumption. Ethanol is oxidatively metabolized to acetate by alcohol dehydrogenase and non-oxidatively metabolized to ethyl glucuronide (EtG), ethyl sulfate (EtS), phosphatidylethanol, or fatty acid ethyl esters (FAEE). Oxidative metabolism is too rapid to provide biomarkers for the detection of ethanol ingestion. However, the non-oxidative metabolite EtG is a useful biomarker because it is stable, non-volatile, water soluble, highly sensitive, and is detected in body fluid, hair, and tissues. EtG analysis methods such as mass spectroscopy, chromatography, or enzyme-linked immunosorbent assay techniques are currently in use. We suggest that nuclear magnetic resonance (NMR) spectroscopy could be used to monitor ethanol intake. As with current conventional methods, NMR spectroscopy doesn't require complicated pretreatments or sample separation. This method has the advantages of short acquisition time, simple sample preparation, reproducibility, and accuracy. In addition, all proton-containing compounds can be detected. In this study, we performed $^1H$ NMR analyses of urine to monitor the ethanol and EtG. Urinary samples were collected over time from 5 male volunteers. We confirmed that ethanol and EtG signals could be detected with NMR spectroscopy. Ethanol signals increased immediately upon alcohol intake, but decreased sharply over time. In contrast, EtG signal increased and reached a maximum about 9 h later, after which the EtG signal decreased gradually and remained detectable after 20-25 h. Based on these results, we suggest that $^1H$ NMR spectroscopy may be used to identify ethanol non-oxidative metabolites without the need for sample pretreatment.

Heme 단백질의 Model로서의 Hemin 착물에 관한 $^1H$ NMR 연구 ($^1H$ NMR Study of mono-and di-cyanide ligated Hemin Complexes as Models of Hemoproteins)

  • 이강봉;김남준;권지혜;이재성;최영상
    • 분석과학
    • /
    • 제7권4호
    • /
    • pp.505-515
    • /
    • 1994
  • DMSO(dimethylsuloxide-$d_6$) 용액 속에 존재하는 CN/CN 리간드의 hemin 착물과 CN/DMSO의 hemin 착물이 $^1H$ NMR로 기록되어지고 분석되어졌다. Hemin으로의 CN 착물화 과정은 온도에 따라 변화함을 NMR 스펙트럼이 보여 주며, 한 개의 CN 리간드에서 두 개의 CN 리간드착물로 바뀌는 과정의 열역학함수는 ${\Delta}H^{\circ}=736.6cal/mol$${\Delta}S^{\circ}=16.4eu$인 흡열과정을 나타낸다. CN/DMSO의 hemin 착물은 Curie behavior로부터의 벗어남은 high-spin 성격의 존재를 나태내고, 이는 Fe-DMSO 결합이 순간적으로 깨짐을 의미하며, 이러한 CN/DMSO hemin 착물이 한 개의 axial ligand가 약한 heme 단백질의 전자 및 분자구조의 model complex로 작용할 수 있음을 보여 준다.

  • PDF

Optimization of 1D 1H Quantitative NMR (Nuclear Magnetic Resonance) Conditions for Polar Metabolites in Meat

  • Kim, Hyun Cheol;Ko, Yoon-Joo;Kim, Minsu;Choe, Juhui;Yong, Hae In;Jo, Cheorun
    • 한국축산식품학회지
    • /
    • 제39권1호
    • /
    • pp.1-12
    • /
    • 2019
  • The objective of this study was to establish an optimized 1D $^1H$ quantitative nuclear magnetic resonance (qNMR) analytical method for analyzing polar metabolites in meat. Three extraction solutions [0.6 M perchloric acid, 10 mM phosphate buffer, water/methanol (1:1)], three reconstitution buffers [20 mM 3-morpholinopropane-1-sulfonic acid, 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid, phosphate buffer], and two pulse programs (zg30, noesypr1d) were evaluated. Extraction with 0.6 M perchloric acid and 20 mM phosphate resulted in a stable baseline and no additional overlap for quantifying polar metabolites in chicken breast. In qNMR analysis, zg30 pulse program (without water-suppression) showed smaller relative standard deviation (RSD) and faster running time than noesypr1d (water-suppression). High-performance liquid chromatography was compared with qNMR analyses to validate accuracy. The zg30 pulse program showed good accuracy and lower RSD. The optimized qNMR method was able to apply for beef and pork samples. Thus, an optimized 1D $^1H$ qNMR method for meat metabolomics was established.