• Title/Summary/Keyword: Multifunctional System

Search Result 133, Processing Time 0.032 seconds

Analysis of whole genome sequencing and virulence factors of Vibrio vulnificus 1908-10 isolated from sea water at Gadeok island coast

  • Hee-kyung Oh;Nameun Kim;Do-Hyung Kim;Hye-Young Shin;Eun-Woo Lee;Sung-Hwan Eom;Young-Mog Kim
    • Fisheries and Aquatic Sciences
    • /
    • v.26 no.9
    • /
    • pp.558-568
    • /
    • 2023
  • Vibrio vulnificus is an aquatic bacterium causing septicemia and wound infection in humans. To understand this pathogen at the genomic level, it was performed whole genome sequencing of a cefoxitin-resistant strain, V. vulnificus 1908-10 possessing virulence-related genes (vvhA, viuB, and vcgC) isolated from Gadeok island coastal seawater in South Korea. The genome of V. vulnificus 1908-10 consisted of two circular contigs and no plasmid. The total genome size was estimated to be 5,018,425 bp with a guanine-cytosine (GC) content of 46.9%. We found 119 tRNA and 34 rRNA genes respectively in the genome, along with 4,352 predicted protein sequences. Virulence factor (VF) analysis further revealed that V. vulnificus 1908-10 possess various virulence genes in classes of adherence, antiphagocytosis, chemotaxis and motility, iron uptake, quorum sensing, secretion system, and toxin. In the comparison of the presence/absence of virulence genes, V. vulnificus 1908-10 had fur, hlyU, luxS, ompU, pilA, pilF, rtxA, rtxC, and vvhA. Of the 30 V. vulnificus comparative strains, 80% of the C-genotype strains have all of these genes, whereas 40% of the E-genotype strains have all of them. In particular, pilA were identified in 80% of the C-type strains and 40% of the E-type strains, showing more difference than other genes. Therefore, V. vulnificus 1908-10 had similar VF characteristics to those of type C strains. Multifunctional-autoprocessing repeats-in-toxin (MARTX) toxin of V. vulnificus 1908-10 contained 8 A-type repeats (GXXGXXXXXG), 25 B.1-type repeats (TXVGXGXX), 18 B2-type repeats (GGXGXDXXX), and 7 C-type repeats (GGXGXDXXX). The National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) showed that the RtxA protein of V. vulnificus 1908-10 had the effector domain in the order of cross-liking domain (ACD)-C58_PaToxP-like domain- α/β hydrolase-C58_PaToxP-like domain.

Targeted Gene Disruption and Functional Complementation of Cytochrome P450 Hydroyxlase Involved in Cyclosporin A Hydroxylation in Sebekia benihana

  • Lee, Mi-Jin;Han, Kyu-Boem;Kim, Eung-Soo
    • Journal of Microbiology and Biotechnology
    • /
    • v.21 no.1
    • /
    • pp.14-19
    • /
    • 2011
  • A cyclic undecapeptide-family natural product, cyclosporin A (CyA), which is one of the most valuable immunosuppressive drugs, is produced nonribosomally by a multifunctional cyclosporin synthetase enzyme complex in a filamentous fungal strain named Tolypocladium niveum. Previously, structural modifications of cyclosporins such as a regionspecific hydroxylation at the $4^{th}$ N-methyl leucine in a rare actinomycetes called Sebekia benihana were reported to lead to dramatic changes in their bioactive spectra. However, the reason behind this change could not be determined since a system to genetically manipulate S. benihana has not yet been developed. To address this limitation, in this study, we utilized the most commonly practiced gene manipulation techniques including conjugation-based foreign gene transfer-and-expression as well as targeted gene disruption to genetically manipulate S. benihana. Using these optimized genetic manipulation systems, a putative cytochrome P450 hydroxylase (CYP) gene named CYP506, which is involved in CyA hydroxylation in S. benihana, was specifically disrupted and genetically complemented. The S. benihana${\Delta}$CYP506 exhibited a significantly reduced CyA hydroxylation yield as well as considerable yield restoration by functional complementation of the S. benihana CYP506 gene, suggesting that the genetically manipulated S. benihana CYP mutant strains may serve as a more efficient bioconversion host for various valuable metabolites including CyA.

Coverage Dependent Adsorption and Electronic Structure of Threonine on Ge (100) Surface

  • Lee, Myeong-Jin;Kim, Gi-Jeong;Lee, Han-Gil
    • Proceedings of the Korean Vacuum Society Conference
    • /
    • 2012.08a
    • /
    • pp.212-212
    • /
    • 2012
  • The Coverage dependent attachment of multifunctional groups included in threonine molecules adsorbed to Ge (100)$-2{\times}1$ surface was investigated using core-level photoemission spectroscopy (CLPES) and density functional theory (DFT) calculations. The core-level spectra at a low coverage indicated that the both carboxyl and amine groups participated in the bonding with the Ge (100) surface by "O-H dissociated and N-dative bonded structure". However, at high coverage level, additional adsorption geometry of "O-H dissociation bonded structure" appeared possibly to minimize the steric hindrance between adsorbed molecules. Moreover, the C 1s, N 1s, and O 1s core level spectra confirmed that the carboxyl oxygen is more competitive against the hydroxymethyl oxygen in the adsorption reaction. The adsorption energies calculated using DFT methods suggested that four of six adsorption structures were plausible. These structures were the "O-H dissociated-N dative bonded structure", the "O-H dissociation bonded structure", the "Om-H dissociated-N dative bonded structure", and the "Om-H dissociation bonded structure" (where Om indicates the hydroxymethyl oxygen). These structures are equally likely, according to the adsorption energies alone. Conclusively, we investigate in threonine on Ge (100) surface system that the "O-H dissociated-N dative bonded structure" and the "O-H dissociation bonded structure" are preferred at low coverage and high coverage.

  • PDF

A Study on the Architectural Condition of Women's Hall as Social Education Facilities (사회교육시설로서 여성회관의 시설현황 연구)

  • Lim, Sun-Joo
    • The Journal of Sustainable Design and Educational Environment Research
    • /
    • v.5 no.1
    • /
    • pp.40-53
    • /
    • 2006
  • Recently, women's social activities in our society have been greatly increased and legal system and mechanism of social structure to pursue a society where gender equality shall be realized has been discussed lively in a detail manner. Nevertheless, the rate of social advancement of Korean women shows much lower than that of the western industrialized countries. The aim of this study is to examine such problem and to look for a solution thereof. As the subject for this survey, such social welfare facility as women's hall was selected, and then its state of facilities was investigated. The results from this survey revealed that women's hall, which had been started constructing since 1950s, began to spread out nationwide reaching the 1990s, and that women's hall was greatly used as a major public facility that supports women's social activities in each region, and that women's hall, which had been started as a social welfare facility, was a multifunctional facility performing functions such as welfare, education, culture and community, and that educational function among these had been changed a little by little in the aspect of contents and purpose according to the changes of times, however, education for women was treated as a major important function in the women's hall and operated accordingly.

  • PDF

생물방제균 Bfacillus subtilis YB-70의 외부 Urease 유전자 도입과 길항력 증강

  • Choi, Jong-Kyu;Kim, Yong-Su;Lee, Eun-Tag;Kim, Sang-Dal
    • Microbiology and Biotechnology Letters
    • /
    • v.25 no.1
    • /
    • pp.30-36
    • /
    • 1997
  • To genetically breed powerful multifunctional antagonistic bacteria, the urease gene of alkalophilic Bacillus pasteurii was transferred into Bacillus subtilis YB-70 which had been selected as a powerful biocontrol agent against root-rotting fungus Fusarium solani. Urease gene was inserted into the HindIII site of pGB215-110 and designated pGU266. The plasmid pGU266 containing urease gene was introduced into the B. subtilis YB-70 by alkali cation transformation system and the urease gene was very stably expressed in the transformant of B. subtilis YB-70(pGU266). The optimal conditions for the transfomation were also evaluated. From the in vitro antibiosis tests against F. solani, the antifungal activity of B. subtilis YB-70 containing urease gene was much efficient than that of the non-transformed strain. Genetic improvement of B. subtilis YB-70 by transfer of urease gene for the efficient control seemed to be responsible for enhanced plant growth and biocontrol efficacy by combining its astibiotic action and ammonia producing ability.

  • PDF

The use of Gradient Analysis in Spatial Understanding of Urbanization (단계적 변화 분석(gradient analysis)을 적용한 도시화의 공간적 평가)

  • Lee, Dong-Kun;Choe, Hye-Yeong
    • Journal of Environmental Impact Assessment
    • /
    • v.17 no.6
    • /
    • pp.357-366
    • /
    • 2008
  • It is certain that urbanization has transformed the ecological consequences severely, but urban ecosystem is not fully understood yet. Urban growth is not like a static form and it spreads spatially and temporally. Therefore in studying urban ecosystem, it is important to relate the spatial pattern of urbanization to ecological processes. Using gradient analysis, we attempted to quantify the urbanization's spatial impacts in Daejeon-city and Cheonan-city, Chungcheong-province, Korea. Because of Multifunctional Administrative City Planning (MACP), a lot of development projects are planned in Chungcheong-province, Korea. It's important to study about original cities' patterns and impacts. These results can be adopted to future city planning. So several measures such as fragmentation, vegetation index, surface temperature, population density, and income rate were computed along a 75km long and 3km wide transect. The results showed that Daejeon-city has a wider urban center, lower vegetation indexes, and higher surface temperature than Cheonan-city. Therefore in the perspective of urban environments and sustainable urbanism, it seems that Cheonan-city is better than Daejeon-city. The changes along the transect have important ecological implications, and quantifying the urbanization gradient is an important step in understanding urban ecology.

A review of nanomaterials based membranes for removal of contaminants from polluted waters

  • Amin, Muhammad T.;Alazba, Abdulrahman A.
    • Membrane and Water Treatment
    • /
    • v.5 no.2
    • /
    • pp.123-146
    • /
    • 2014
  • Safe water has becoming a competitive resource in many parts of the world due to increasing population, prolonged droughts, climate change etc. The development of economical and stable materials and methods for providing the fresh water in adequate amounts is the need of the water industry. Nanomaterials have unique characteristics e.g., large surface areas, size, shape, and dimensions etc. that make them particularly attractive for removing various contaminants from polluted waters. Nanotechnology based multifunctional and highly efficient membrane processes are providing affordable solutions in the new era that do not rely on large infrastructures or centralizes systems. The objective of the current study is to review the possible applications of the membrane based nanomaterials/composites for the removal of various contaminations from polluted waters. The article will briefly overview the availability and practice of different nanomaterials based membranes for removal of bacteria and viruses, organic compounds and inorganic solutes etc. present in surface water, ground water, seawater and/or industrial water. Finally, recommendations are made based on the current practices of nanofiltration membranes in water industry for a stand-alone membrane filtration system in removing various types of contaminants from polluted waters.

AltMV TGB1 Nucleolar Localization Requires Homologous Interaction and Correlates with Cell Wall Localization Associated with Cell-to-Cell Movement

  • Nam, Jiryun;Nam, Moon;Bae, Hanhong;Lee, Cheolho;Lee, Bong-Chun;Hammond, John;Lim, Hyoun-Sub
    • The Plant Pathology Journal
    • /
    • v.29 no.4
    • /
    • pp.454-459
    • /
    • 2013
  • The Potexvirus Alternanthera mosaic virus (AltMV) has multifunctional triple gene block (TGB) proteins, among which our studies have focused on the properties of the TGB1 protein. The TGB1 of AltMV has functions including RNA binding, RNA silencing suppression, and cell-to-cell movement, and is known to form homologous interactions. The helicase domains of AltMV TGB1 were separately mutated to identify which regions are involved in homologous TGB1 interactions. The yeast two hybrid system and Bimolecular Fluorescence Complementation (BiFC) in planta were utilized to examine homologous interactions of the mutants. Helicase motif I of AltMV TGB1 was found to be critical to maintain homologous interactions. Mutations in the remaining helicase motifs did not inhibit TGB1 homologous interactions. In the absence of homologous interaction of TGB1, subcellular localization of helicase domain I mutants showed distinctively different patterns from that of WT TGB1. These results provide important information to study viral movement and replication of AltMV.

Multifunctional Interface Board for the implementation of IoT (사물 인터넷을 위한 다기능 인터페이스 보드 구현)

  • kim, Ka-Eul;Oh, Kang-Jin;Jo, Su-Min;Kwoen, Oh-Jun;Kim, Sun-Hyeng
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
    • /
    • 2015.10a
    • /
    • pp.530-532
    • /
    • 2015
  • Nowadays, it is animately studied on IoT(Internet of Things) on the strength of development of the short-range communications technology and smart device. In this paper, it made a interface board which is capable of short-range communications networks based on embedded linux and Android OS (operating system). and we also made a IoT sensor module and device driver module. This devices are easily separated and changed and also simply embodied in IoT, and It was implemented using the Android app that allows you to control the sensors.

  • PDF

Effects of Co-agent Type and Content on Curing Characteristics and Mechanical Properties of HNBR Composite

  • Lee, Young Seok;Ha, KiRyong
    • Elastomers and Composites
    • /
    • v.55 no.2
    • /
    • pp.95-102
    • /
    • 2020
  • Currently, peroxide cure is a widely used cure system for rubber materials. To improve its effectivity, co-agents are used to enhance the peroxide efficiency and mechanical properties of rubber materials. Co-agents are multifunctional organic compounds that are highly reactive towards free radicals. These co-agents provide higher cross-link densities for a given peroxide concentration and improve the mechanical properties of peroxide-cured rubber composites. In this study, trimethylolpropane trimethacrylate (TMPTMA) and high vinyl 1,2-polybutadiene (HVPBD) were used as co-agents. In order to obtain a concentration that achieves a favorable balance between mechanical properties and co-agent concentration, this research investigated the effects of co-agent content on the curing characteristics, chemical structures, and mechanical properties of HNBR composites. Additionally, the heat aging properties and compression sets of HNBR composites were investigated. Based on the results, we found that the HNBR composites with TMPTMA co-agents exhibited higher Shore A hardness and 10% modulus and better heat aging resistance and compression set than that of the HVPBD co-agent. The heat aging resistance and compression set deteriorated with increasing HVPBD content.