• Bulletin of the Korean Chemical Society
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• v.30 no.7
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• pp.1567-1572
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• 2009

Conformational change of ubiquitin variant with valine to alanine mutation at sequence position 26 was studied by varying solvent pH. Fluorescence emission spectra indicated that this variant ubiquitin has some residual structures in acidic and basic solution as compared to denaturant-induced unfolded state. Far-UV circular dichroic spectra indicated that the base-denatured state had more secondary structure than the acid-denatured state. Near-UV circular dichroic spectra indicated that the aromatic side-chains were in the relatively more rigid environment in the base-denatured state than those in the acid-denatured state. Although it appears that the more tertiary structure present in the base-denatured state, refolding reactions measured by stopped-flow fluorescence device suggest that both the acid- and base-denatured states occur before the major folding transition state. The acid- and base-denatured states are considered to reflect the early event of protein folding process.

• BMB Reports
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• v.49 no.1
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• pp.26-36
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• 2016

Emerging trends for cardiac tissue engineering are focused on increasing the biocompatibility and tissue regeneration ability of artificial heart tissue by incorporating various cell sources and bioactive molecules. Although primary cardiomyocytes can be successfully implanted, clinical applications are restricted due to their low survival rates and poor proliferation. To develop successful cardiovascular tissue regeneration systems, new technologies must be introduced to improve myocardial regeneration. Electrospinning is a simple, versatile technique for fabricating nanofibers. Here, we discuss various biodegradable polymers (natural, synthetic, and combinatorial polymers) that can be used for fiber fabrication. We also describe a series of fiber modification methods that can increase cell survival, proliferation, and migration and provide supporting mechanical properties by mimicking micro-environment structures, such as the extracellular matrix (ECM). In addition, the applications and types of nanofiber-based scaffolds for myocardial regeneration are described. Finally, fusion research methods combined with stem cells and scaffolds to improve biocompatibility are discussed. [BMB Reports 2016; 49(1): 26-36]

• Bulletin of the Korean Chemical Society
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• v.30 no.11
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• pp.2717-2722
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• 2009

The use of the classification and regression tree (CART) methodology was studied in a quantitative structure-activity relationship (QSAR) context on a data set consisting of the binding affinities of 39 imidazobenzodiazepines for the α1 benzodiazepine receptor. The 3-D structures of these compounds were optimized using HyperChem software with semiempirical AM1 optimization method. After optimization a set of 1481 zero-to three-dimentional descriptors was calculated for each molecule in the data set. The response (dependent variable) in the tree model consisted of the binding affinities of drugs. Three descriptors (two topological and one 3D-Morse descriptors) were applied in the final tree structure to describe the binding affinities. The mean relative error percent for the data set is 3.20%, compared with a previous model with mean relative error percent of 6.63%. To evaluate the predictive power of CART cross validation method was also performed.

• Bulletin of the Korean Chemical Society
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• v.34 no.2
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• pp.415-420
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• 2013

Effect of chemical substitution at the para-position of the thiophenoxyl radical has been theoretically investigated in terms of energetics, structures, charge densities and orbital shapes for the ground and first electronically excited states. It is found that the adiabatic energy gap increases when $CH_3$ or F is substituted at the para-position. This change is attributed to the stabilization of the ground state of thiophenoxyl radical through the electron-donating effect of F or $CH_3$ group as the charge or spin of the singly-occupied molecular orbital is delocalized over the entire molecule especially in the ground state whereas in the excited state it is rather localized on sulfur and little affected by chemical substitutions. Quantitative comparison of predictions based on four different quantum-mechanical calculation methods is presented.

• Bulletin of the Korean Chemical Society
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• v.25 no.11
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• pp.1681-1686
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• 2004

Self-assembled systems with polyamidoamine (PAMAM) dendrimers combined with gold nanoparticles have been widely studied because of their potential applications in molecular electronics, catalyst carriers, chemical sensors, and biomedical devices. In our work, gold nanoparticle monolayers and multilayers with pure and ferrocene-tethered PAMAM dendrimers as cross-linking molecules were deposited on a mixed self-assembled monolayer of gold substrates. The various generations of PAMAM dendrimers can be covalently attached to mercaptoundecanoic acid mixed with a mercaptoundecanol self-assembled monolayer. Cyclic voltammograms show that redox peak currents on the alternate multilayers of gold nanoparticles and ferrocene-tethered PAMAM dendrimers increase as the number of layers increases. Fourier transform IR external reflection spectroscopy and scanning electron microscopy support the results from electrochemical measurements.

• Steel and Composite Structures
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• v.12 no.6
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• pp.491-504
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• 2012

In this paper, the nonlinear cylindrical bending of simply supported, functionally graded nanocomposite plates reinforced by single-walled carbon nanotubes (SWCNTs), is studied. The plates are subjected to uniform pressure loading in thermal environments and their geometric nonlinearity is introduced in the strain-displacement equations based on Von-Karman assumptions. The material properties of SWCNTs are assumed to be temperature-dependent and are obtained from molecular dynamics simulations. The material properties of functionally graded carbon nanotube-reinforced composites (FG-CNTCRs) are assumed to be graded in the thickness direction, and are estimated through a micromechanical model. The governing equations are reduced to linear differential equation with nonlinear boundary conditions yielding a simple solution procedure. Numerical results are presented to show the effect of the material distribution on the deflections and stresses.

• Macromolecular Research
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• v.11 no.5
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• pp.328-333
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• 2003

A series of polyesteramides with randomly introduced ester/amide group ratio of 50/50 were newly synthesized by reacting terephthaloyl chloride, isophthaloyl chloride and sebacoyl chloride with tyramine and tyrosine. The polymerization was carried out by interfacial polymerization in two phase solvent systems, which gave various polyesteramides with moderate molecular weights in good yields. The chemical structures of the polymers were confirmed by $^1$H NMR, IR and elemental analysis. Tyrosine based polyesteramide was degraded thermally around 29$0^{\circ}C$ to give the polyesteramide, which was obtainable from tyramine. Thermal stability and degradation behaviors were examined by differential scanning calorimetry and thermogravimetric analyses.

• Elastomers and Composites
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• v.55 no.2
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• pp.103-107
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• 2020

Herein, resin-formed polysilsesquioxanes (PSSQs) were synthesized using monomolecular fluoro silane as a precursor. The synthesized PSSQs exhibited anti-smudge performance and were used as coating liquid. Two structures were acquired by controlling the amount of the silane precursor and the K₂CO₃ catalyst; these materials were used to prepare the anti-smudge coating liquid solution. The synthesized product was analyzed by various methods such as nuclear magnetic resonance spectroscopy, X-ray diffraction analysis, gel permeation chromatography, and water contact angle measurement. The results confirmed that the as-synthesized PSSQs exhibited the ladder structure and had a molecular weight of 5,117 g/mol and water contact angle of 102.31°.

• Vacuum Magazine
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• v.4 no.4
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• pp.18-22
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• 2017

Transmission electron microscopy (TEM) is a versatile and powerful technique that enables direct visualization of biological samples of sizes ranging from whole cell to near-atomic resolution details of a protein molecule. Thanks to numerous technical breakthroughs and monumental discoveries, 3D electron microscopy (3DEM) has become an indispensable tool in the field of structural biology. In particular, development of cryo-electron microscopy(cryo-EM) and computational image processing played pivotal role for the determination of 3D structures of complex biological systems at sub-molecular resolution. Here, basis of TEM and 3DEM will be introduced, especially focusing on technical advancements and practical applications. Also, future prospective of constantly evolving 3DEM field will be discussed, with an anticipation of great biological discoveries that were once considered impossible.

• KSBB Journal
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• v.16 no.2
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• pp.115-122
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• 2001

Molecular imprinting has now been established as a technique which allows the creation of tailor-made binding sites for many classes of compounds. MIPs were prepared by covalent and non-covalent chemical bonding systems, by interactions between functional monomer and template. The shape of MIP is divided to particle and membrane. MIP membranes can be prepared by surface imprinting, in-situ polymerization, wet phase inversion and the dry phase inversion method. MIPs have been mainly used for analytical separation and biosensor systems to separate and detect chiral compounds and materials with similar structures. However the application of MIP by the chemical industries is still in its infancy stages. This review summarizes the preparative characteristics and applications of MIP with respect to chiral separations and biosensors.