• 제목/요약/키워드: Molecular identification of hybrids

검색결과 11건 처리시간 0.215초

Molecular Identification and Effects of Temperature on Survival and Growth of Hybrids between Haliotis gigantea Gmelin (♀) and Haliotis discus hannai Reeve (♂)

  • An, Hye Suck;Han, Jong Won;Hwang, Hyun-Ju;Jeon, Hancheol;Jung, Seung-Hyun;Jo, Seonmi;Choi, Tae-Young;Hyun, Young Se;Song, Ha Yeun;Whang, Ilson
    • 한국해양생명과학회지
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    • 제2권2호
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    • pp.83-89
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    • 2017
  • In abalones, interspecific hybridization has been suggested as a possible means to increase production and desired traits for the industry. In Korea, Haliotis gigantea is considered a species with a larger size and higher temperature tolerance than H. discus hannai. However, H. discus hannai is considered the most valuable and popular fishery resource due to its better acceptance and higher market prices. Thus, viable interspecific hybrids have been produced by artificial inseminating H. gigantea eggs with H. discus hannai sperm. However, the reciprocal hybrid cross was not successful. In this study, the hybridity and the growth and thermal tolerance performance of the interspecific hybrids were examined. A combination of various assays revealed maximum growth occurrence at 21℃ and the higher growth rate in the hybrids than that of H. discus hannai parent. In addition, the growth and survival at high-temperature (28℃) of the hybrids was equivalent to that of the highly tolerant H. gigantea parent, suggesting new possibilities to overcome the mass mortality in H. discus hannai during high temperature periods of summer season in Korea. Furthermore, the induced interspecific hybrid status was confirmed by the presence of species-specific bands for each parental species of the random amplified polymorphic DNA (RAPD) profiles using universal rice primer (URP), which could be used as speciesspecific markers to distinguish the hybrids and their parental species.

Production and Molecular Cytogenetic Identification of Wheat-Barley Hybrids and Translocations

  • Lang, Marta-Molnar;Gabriella Linc;Jozsef Sutka
    • Journal of Plant Biotechnology
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    • 제1권1호
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    • pp.8-12
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    • 1999
  • New winter wheat winter barley hybrids were produced (Mv9 kr1 Igri, Mv9 kr1 Osnova, Asakazekomugi Manas). The wheat-barley hybrids showed entire male sterility and were multiplied in tissue culture. Chromosome configurations were studied with GISH in meiosis in the Mv9 krl x Igri hybrid and in its progenies multiplied in vitro. Chromosome pairing between wheat and barley has been observed in some cells in the hybrids multiplied in vitro. Backcross plants with 43 and 44 chromosomes were selected with the aim of developing new wheat-barley addition lines. Wheat-barley translocations were demonstrated with GISH in backcross progenies originating from in vitro regenerated wheat (Triticum aestivum L. cv. Chinese Spring) x barley (Hordeum vulgare L. cv. Betzes) hybrids. Five different translocations were observed. Sequential N-banding and GISH analyses were performed to further identify the translocations. The N-banding pattern of the Robertsonian translocation suggests that this chromosome consists of the short arm of barley chromosome 4H translocated to the long arm of 2B of wheat. Plants with four different homozygous translocations were selected from the following BC2F3 generation.

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Molecular characterization of reciprocal crosses of Aerides vandarum and Vanda stangeana (Orchidaceae) at the protocorm stage

  • Kishor, Rajkumar;Devi, H.S.;Jeyaram, K.;Singh, M.R.K.
    • Plant Biotechnology Reports
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    • 제2권2호
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    • pp.145-152
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    • 2008
  • Aerides vandarum and Vanda stangeana are two rare and endangered vandaceous orchids with immense floricultural traits. The intergeneric hybrids were synthesized by performing reciprocal crosses between them. In vitro germination response of the immature hybrid embryos was found to be best on half-strength Murashige and Skoog medium supplemented with 20% (v/v) coconut water/liquid endosperm from tender coconut. Determination of hybridity was made as early as the immature seeds or embryos germinated in vitro, using randomly amplified polymorphic DNA (RAPD) markers. Out of 15 arbitrarily chosen decamer RAPD primers, two were found to be useful in amplification of polymorphic bands specific to the parental species and their presence in the reciprocal crosses. However, a decisive profile that can identify the reciprocal crosses could not be provided by RAPD. Amplification of the trnL-F non-coding regions of chloroplast DNA of the parent species and hybrids aided easy identification of the reciprocal crosses from the fact that maternal inheritance of chloroplast DNA held true for these intergeneric hybrids. Subsequent restriction digestion of the polymerase chain reaction (PCR) amplified trnL-F non-coding regions of chloroplast DNA also consolidated the finding. Such PCR-based molecular markers could be used for early determination of hybridity and easy identification of the reciprocal crosses.

COX I 및 RAG 2 유전자 염기서열 분석에 의한 tiger grouper Epinephelus fuscoguttatus와 giant grouper E. lanceolatus 간 잡종의 동정 (Identification of Hybrid between the Tiger Grouper Epinephelus fuscoguttatus and the Giant Grouper E. lanceolatus by Analyzing COX I and RAG 2 Sequences)

  • 김근식;이효련;;방인철
    • 한국어류학회지
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    • 제26권1호
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    • pp.70-73
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    • 2014
  • Interspecific hybrids between tiger grouper Epinephelus fuscoguttatus and giant grouper E. lanceolatus were genetically identified based on the partial sequence analysis of mitochondrial cytochrome c oxidase I (COX I) gene and nuclear recombination activating gene 2 (RAG 2) gene. Out of 585 base positions of RAG 2, a total of five nucleotide substitutions were detected between the two parental species (E. fuscoguttatus and E. lanceolatus). The hybrids had two distinct types of RAG 2 sequences corresponding to those of both parental species. Mitochondrial COX I gene sequencing showed that hybrids had sequences identical to E. fuscoguttatus. Molecular data clearly demonstrate that hybridization does occur between E. fuscoguttatus and E. lanceolatus, but with E. fuscoguttatus as the maternal parent.

Screening and classification of mulberry silkworm, Bombyx mori based on thermotolerance

  • Chandrakanth, Nalavadi;Moorthy, Shunmugam M.;Ponnuvel, Kangayam M.;Sivaprasad, Vankadara
    • International Journal of Industrial Entomology and Biomaterials
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    • 제31권2호
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    • pp.115-126
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    • 2015
  • The tropical climate prevailing in India adversely affects temperate bivoltine silkworm rearing and causes crop loss especially during summer. Identification of high temperature tolerant bivoltine breeds by screening for thermotolerance in the silkworm, Bombyx mori (Lepidoptera: Bombycidae) is an essential prerequisite for the development of thermotolerant bivoltine breeds / hybrids. Therefore, in this study, 20 silkworm breeds were reared at different temperatures (25 ± 1℃,32 ± 1℃, 34 ± 1℃ and 36 ± 1℃) for 6 h every day from 3rd d of 5th instar to till spinning. Significant differences (p < 0.01) were found among all the rearing traits over temperature. Based on pupation percentage, SK4C and BHR3 were identified as thermotolerant bivoltine breeds. Hierarchical clustering analysis based on rearing traits at tested temperatures grouped 20 silkworm breeds in four clusters which included one cluster each of susceptible and tolerant, and two clusters of moderately tolerant silkworm breeds. This suggests that clustering based on rearing data at high temperatures by using Euclidean distance can be an effective approach in classifying the silkworm breeds on their thermotolerance capacity. The identified breeds would be used for development of thermo tolerant bivoltine silkworm breeds / hybrids.

수입산 바리과(Family Serranidae) 잡종 어류(Epinephelus moara ♀×E. lanceolatus ♂)의 분자생물학적 판별 (Molecular Biological Species Identification of Imported Groupers(Epinephelus moara ♀×E. lanceolatus ♂))

  • 김용휘;박종연;김재훈;방인철
    • 한국수산과학회지
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    • 제53권4호
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    • pp.566-571
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    • 2020
  • To classify a presumed hybrid of imported grouper species acquired from the National Fishery Products Quality Management Service, maternal and paternal lines were identified based on partial sequencing of mitochondrial cytochrome c oxidase 1 (co1) and nuclear recombination activation gene 1 (rag1) genes. The matrilineal species was identified as Epinephleus moara by a partial (760 bp) co1 sequence. Ambiguous sequences with base pairs belonging to E. moara or E. lanceolatus were found in a total of 15 different base pairs in the partial 1,159 bp of the rag1 gene, and the patrilineal species was found to be E. lanceolatus. Therefore, all of the groupers examined in the study were identified to be hybrids of E. moara and E. lanceolatus. In addition, a fast and convenient method using random amplification of polymorphic DNA (RAPD) was established for hybrid discrimination. Hybrids between E. moara ♀ and E. lanceolatus ♂ were identified through specific bands of 387 bp and 433 bp in PRIMER 6.

폴리피롤-사이클로덱스트린 혼성체를 이용한 유해화합물질의 검출 (Identification of Toxic Chemicals Using Polypyrrole-Cyclodextrin Hybrids)

  • 배준원
    • 공업화학
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    • 제30권2호
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    • pp.186-189
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    • 2019
  • 폴리피롤(polypyrrole)은 전기를 전도하는 고분자로 뛰어난 전기적 신호 전달을 지니며, 사이클로덱스트린(cyclodextrin)은 환형다당류(cyclic oligosaccharide) 분자들로서 저분자량 물질을 포획할 수 있는 친환경 물질로 널리 활용되고 있다. 따라서 이들 두 가지 물질을 혼합하여 혼성체를 제조할 수 있다면 사이클로덱스트린이 host가 되어 guest 물질을 포획하였을 때 발생하는 전기 신호를 폴리피롤이 민감하게 전달할 수 있게 되어 우수한 감지 능력을 갖게 된다. 따라서 본 연구에서는 폴리피롤/사이클로덱스트린 혼성체를 간단한 수용액 방식으로 제조하여, 제조된 혼성체를 하이드로젤(hydrogel)에 도입하여 건조한 후 금 전극 위에 적용하여 대표적인 유해성 분자인 메틸파라벤(methyl paraben)을 검출할 수 있는지에 대해서 살펴보았다. 그리고 폴리피롤만으로 이루어진 물질과 비교해 봤을 때, 사이클로덱스트린의 도입효과는 존재하는 것으로 나타났다. 이 연구는 전도성 고분자와 친환경 분자 혼성체를 유해물질 감지에 활용할 수 있는 가능성을 제시하고 있다.

엽록체 matK 와 핵 ITS 염기서열을 이용한 나도풍란속 및 풍란속의 계통과 종동정 (Phylogenetic position of Neofinetia and Sedirea (Orchidaceae) and their species identification using the chloroplast matK and the nuclear ITS sequences)

  • 김영기;조상진;김기중
    • 식물분류학회지
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    • 제44권1호
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    • pp.39-50
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    • 2014
  • 엽록체 matK 유전자와 핵 ITS 염기서열을 이용하여 나도풍란속 및 풍란속의 계통학적 위치를 정립하였다. 또한, 이들 마커를 이용하여 종 및 원산지 추적에 활용가능성을 평가하였다. 풍란속과 나도풍란속은 두 마커 모두에서 뚜렷한 단계통군을 형성하였다. 풍란속의 자매군은 Vanda임이 두 마커 모두에서 입증되었으나,본 연구 결과는 풍란속을 Vanda에 포함시키는 처리에는 동의하지 않았다. 나도풍란속은 (Dimorphorchis (Pteroceras (Saccolabiun+Phalaeonopsis))) 계통군과 자매군을 형성하였고, 이중 Dimorphorchis와 자매속일 가능성이 가장 높았다. 형태적 유사성으로 나도풍란속이 Aerides와 자매속이라는 주장의 가능성은 희박하였다. 두 마커를 분석한 결과 풍란속의 경우 종 및 종 내의 산지별 구별이 가능한 것으로 평가되었다. 따라서 풍란의 재배 개체들의 기원을 규명하는데도 유용한 것으로 평가되었다. 그러나, 공공 염기서열 DB에 있는 서열들은 의유전자로 추정되는 서열들을 다수 포함하고 있었다. 또한, 재배 난과식물에는 속간 및 종간 잡종이 많으며 잡종에 의한 수평적 유전자 이동문제 등이 결부되어 있으므로, 계통학적으로 염기서열 자료를 이용하는데 주의하여야 한다. 계통분석을 위하여는 한 종 내의 여러 개체로부터 염기서열을 확보하는 것이 이러한 위험성을 줄이는 방법 중에 하나이다.

Genome-wide analysis of heterosis-related genes in non-heading Chinese cabbage

  • Yi, Hankuil;Lee, Jeongyeo;Song, Hayong;Dong, Xiangshu;Hur, Yoonkang
    • Journal of Plant Biotechnology
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    • 제44권3호
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    • pp.208-219
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    • 2017
  • Heterosis or hybrid vigor describes a phenomenon that superior phenotypes compared to the two parents are observed in the heterozygous $F_1$-hybrid plants. Identification and characterization of heterosis-related genes (HRGs) will facilitate hybrid breeding in crops. To identify HRGs in Brassica rapa, we analyzed transcriptome profiling using a Br300K microarray in non-heading Chinese cabbage at three developmental stages. A large number of genes were differentially expressed in $F_1$ hybrids and non-additive expression was prominent. Genes that are expressed specifically for $F_1$ hybrid at all three stages were Brassica-specific uncharacterized genes and several defense-related genes. Expression of several photosynthesis- and stress-related genes were also $F_1$ hybrid-specific. Thirteen NBS-LRR class genes showed high and specific expression in $F_1$ hybrid Shulu: some of them were characterized as defense genes in Arabidopsis, but most have not been. Further characterization of these defense-related genes in Brassica species and its application will be helpful for understanding the role of defense responses in heterosis. In addition, results obtained in this study will be valuable to develop molecular markers for heterosis and disease resistance in B. rapa.

흰나리(Lilium formosanum Wallace) 식별을 위한 CAPS 마커의 개발 (Development of CAPS marker for identifying a Formosan lily (Lilium formosanum))

  • 정성진;이가연;윤아라;장지영;김진국;이긍주
    • 농업과학연구
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    • 제41권2호
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    • pp.101-106
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    • 2014
  • This study was conducted to identify lily species native to Korea from formosan lily (Lilium formosanum) belonging to Longiflorum section. Due to flowering time, flower color and orientation, long shelf life and resistant to diseases, the native lily species can be valuable genetic resources for interspecific hybrids. One of the chloroplast genes, matK, was used to clone and sequence to explore any base changes. The matK was successfully amplified into 1,539 bp (94% of the gene) and phylogenetic tree demonstrated 6 clades for those 11 lily species used in this study. There were one or two base substitutions among 10 lilies native to Korea, while formosan lily native to Taiwan exhibited 6 base substitutions in matK gene, rendering it genetically distant. A restriction enzyme NruI recognized one of the six base changes, and digested the matK gene of 10 native lily species only, but not in formosan lily. The confirmed cleavage characteristic of the target region in matK gene was designed into a CAPS (cleaved amplified polymorphic sequences) marker which will be available to estimate compatibility of interspecific hybridization and to trace the pedigree when those native lilies are crossed with the formosan lily.