• Title/Summary/Keyword: Molecular Dynamics Sibulation

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Conformational Dependent Energy Migration on Cyclic Porphyrin Arrays

  • Song, Suwhan;Han, Minwoo;Sim, Eunji
    • Proceeding of EDISON Challenge
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    • 2015.03a
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    • pp.163-166
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    • 2015
  • Intramolecular energy migration in a cyclic porphyrin array is spontaneous transfer of energy from one excited site to another. Since the efficiency of energy migration is inversely proportional to distance, the energy migration is occurred on their adjacent sites more often than distant ones. Therefore, the energy migration in the cyclic porphyrin array is largely dependent on their conformational characters. However, evaluation of conformational information by means of experimental tools is ambiguous since their limited resolution. In this work, we calculate the internal angle and distance distributions of cyclic porphyrin arrays using molecular dynamics simulations to obtain conformational information. To evaluate the angle and distance distributions respect to molecular size, we constructed molecules with n porphyrin dimers (n=1,3,7) in implicit solvent environment. Performing molecular dynamics simulations, we modulated alkyl groups to investigate additional conformational effects of the system.

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