• 제목/요약/키워드: Molecular Characteristics

검색결과 2,994건 처리시간 0.036초

Proteome analysis of roots of sorghum under copper stress

  • Roy, Swapan Kumar;Cho, Seong-Woo;Kwon, Soo Jeong;Kamal, Abu Hena Mostafa;Lee, Dong-Gi;Sarker, Kabita;Lee, Moon-Soon;Xin, Zhanguo;Woo, Sun-Hee
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2017년도 9th Asian Crop Science Association conference
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    • pp.130-130
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    • 2017
  • Sorghum bicolor is considered as copper-tolerant species. The present study was conducted to understand the copper tolerance mechanism in Sorghum seedling roots. Morphological and effects of Cu on other interacting ions were observed prominently in the roots when the plants were subjected to different concentrations (0, 50, and $100{\mu}M$) of $CuSO_4$. However, the morphological characteristics were reduced by Cu stress, and the most significant growth inhibition was observed in plants treated with the highest concentration of $Cu^{2+}$ ions ($100{\mu}M$). In the proteome analysis, high-throughput two-dimensional polyacrylamide gel electrophoresis coupled with MALDI-TOF-TOF mass spectrometry was performed to explore the molecular responses of Cu-induced sorghum seedling roots. In two-dimensional silver-stained gels, a total of 422 differentially expressed proteins (${\geq}1.5-fold$) were identified using Progenesis SameSpot software. A total of 21 protein spots (${\geq}1.5-fold$) from Cu-induced sorghum roots were analyzed by mass spectrometry. Of the 21 differentially expressed protein spots from Cu-induced sorghum roots, a total of 10 proteins were up-regulated, and 11 proteins were down-regulated. The abundance of the most identified protein species from the roots that function in stress response and metabolism was significantly enhanced, while protein species involved in transcription and regulation were severely reduced. The results obtained from the present study may provide insights into the tolerance mechanism of seedling roots in Sorghum.

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Comparative proteome analysis of seeds of proso millet (Panicum miliaceum) cultivars

  • Roy, Swapan Kumar;Kwon, Soo Jeong;Park, Hyeong-Jun;Yu, Je-Hyeok;Sarker, Kabita;Cho, Seong-Woo;Jung, Tae-Wook;Park, Cheol-Ho;Woo, Sun-Hee
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2017년도 9th Asian Crop Science Association conference
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    • pp.120-120
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    • 2017
  • Since the composition of proteins from the Korean cultivars of Proso millet is unknown; thereby, the present study was conducted to obtain a reference map of millet seed proteins and identify the functional characteristics of the identified proteins. Proteins extracted from the millet seeds of various cultivars, were investigated using proteomic techniques as 2D electrophoresis coupled with mass fingerprinting. The 1152 (differentially expressed) proteins were detected on 2-D gel. Among them, 26 reproducible protein spots were analyzed by MALDI-TOF-TOF mass spectrometry. Out of 26 proteins, 2 proteins were up-regulated towards all cultivars of millet, while 7 proteins were up-regulated and 13 proteins were down-regulated against only one cultivar. However, abundance in most identified protein species, associated with metabolism, transcription and transcription was significantly enhanced, while that of another protein species involved in polysaccharide metabolism, stress response and pathogenesis were severely reduced. Taken together, the results observed from the study suggest that the differential expression of proteins from the four cultivars of millet may be cultivar-specific. Taken together, a proteomic investigation of millet seeds from different cultivars, we sought to better understand the genetic variation of millet cultivars representing the future millet research, and the functional categorization of individual proteins on the basis of their molecular function.

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Comparative proteome analysis of rice leaves in response to high temperature

  • Kim, Sang-Woo;Roy, Swapan Kumar;Kwon, Soo Jeong;Cho, Seong-Woo;Cho, Yong-Gu;Lee, Chul-Won;Woo, Sun-Hee
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2017년도 9th Asian Crop Science Association conference
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    • pp.121-121
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    • 2017
  • The productivity of rice has been influenced by various abiotic factors including temperature which cause to limitations to rice yield and quality. Rice yield and quality are adversely affected by high temperature globally. In the present study, four Korean four cultivars such as Dongan, Ilpum, Samkwang, Chucheong were investigated in order to explore molecular mechanisms of high temperature at seedling stage. Rice seedlings grown at $28/20^{\circ}C$ (day/night) were subjected to 7-day exposure to $38/28^{\circ}C$ for high-temperature stress, followed by 2-D based proteomic analysis on biological triplicates of each treatment. The growth characteristics demonstrated that Dongan is tolerant while Ilpum is sensitive to high-temperature stress. High temperature has an adverse effect in the seedling stage both in high temperature sensitive and tolerant cultivar. Two-dimensional gels stained with silver staining, a total of 722 differential expressed protein spots (${\geq}1.5-fold$) were identified using Progenesis SameSpot software. However, a total of 38 differentially expressed protein spots were analyzed by LTQ-FT-ICR MS. Of these, 9 proteins were significantly increased while 10 decreased under high-temperature treatment. Significant changes were associated with the proteins involved in the carbohydrate metabolism, photosynthesis, and stress responses. Proteome results revealed that high-temperature stress had an inhibitory effect on carbon fixation, ATP production, and photosynthetic machinery pathway. The expression level of mRNA is significantly correlated with the results obtained in the proteome investigation. Taken together, these findings provide a better understanding of the high-temperature resistance by proteomic approaches, providing valuable insight into improving the high-temperature stress tolerance in the global warming epoch.

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The Biocontrol Activity of Chromobacterium sp. Strain C-61 against Rhizoctonia solani Depends on the Productive Ability of Chitinase

  • Park, Seur-Kee;Lee, Myung-Chul;Harman, Gary E.
    • The Plant Pathology Journal
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    • 제21권3호
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    • pp.275-282
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    • 2005
  • A chitinolytic bacterium, Chromobacterium sp. strain C-61, was found strongly antagonistic to Rhizoctonia solani, a causal agent of damping-off of eggplant. In this study, the biocontrol activity and enzymatic characteristics of strain C-61 were compared with its four Tn5 insertion mutants (C61-A, -B, -C, and -D) that had lower chitinolytic ability. The chitinase activity of a 2-day old culture was about $76\%,\;49\%\;and\;6\%$ level in C61-A, C61-B and in C61-C, respectively, compared with that of strain C-61. The $\beta-N-acetylhexosaminidase$(Nahase) activity was little detected in strain C-61 but increased largely in C-61A, C61-B and C61-C. Activities of chitinase and Nahase appeared to be negatively correlated in these strains. Another mutant, C-61D, produced no detectable extracellular chitinase and Nahase. The in vitro and in vivo biocontrol activities of strain C-61 and its mutants were closely related to their ability to produce chitinase but not Nahase. No significant differences in population densities between strain C-61 and its mutants were observed in soil around eggplant roots. The results of SDS-PAGE and isoelectrofocusing showed that a major chitinase of strain C-61 is 54-kDa with pI of approximately 8.5. This study provides evidence that the biocontrol activity of Chromobacterium sp. strain C-61 against Rhizoctonia solani depends on the ability to produce chitinase with molecular weight of 54-kDa and pI of 8.5.

Morphological Variations, Genetic Diversity and Pathogenicity of Colletotrichum species Causing Grape Ripe Rot in Korea

  • Hong, Sung-Kee;Kim, Wan-Gyu;Yun, Hae-Keun;Choi, Kyung-Jin
    • The Plant Pathology Journal
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    • 제24권3호
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    • pp.269-278
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    • 2008
  • Ripe rot was frequently observed on fruits, leaves and stems of grape growing in eight locations in Korea from 2004 to 2006. All 30 isolates of Colletotrichum sp. were obtained from lesions of the ripe rot on grape plants. Out of the isolates, 19 isolates were identified as Colletotrichum acutatum and the others as Colletotrichum gloeosporioides based on morphological and cultural characteristics. Inter and intra specific variations of the Colletotrichum spp. isolates were investigated using RAPD and sequences of rDNA ITS and $\beta$-tubulin-2. Isolates of C. acutatum and C. gloeosporioides were distinctly differentiated by molecular analyses. Phylogenetic trees of ITS and$\beta$-tubulin-2 showed that Korean isolates of C. acutatum were clustered into groups A2 and A3 among the eight global groups. A2 included non-chromogenic isolates and A3 chromogenic ones. Both C. acutatum and C. gloeosporioides isolates were tested for pathogenicity to grape leaves. All isolates tested induced lesions on the leaves of grape by artificial inoculation. There was no difference in pathogenicity between C. acutatum and C. gloeosporioides isolates. This is the first report that C. acutatum except C. gloeosporioides causes grape ripe rot in Korea.

실리콘비삽입물 표면의 석회화: 부위별 석회침착물의 특성 (Calcification on the Surface of Silicone Nasal Implants: Regional Properties of Calcification Deposits)

  • 이민재;김현지;한기환;김준형;손대구
    • Archives of Plastic Surgery
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    • 제33권3호
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    • pp.324-329
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    • 2006
  • The silicone rubber implants are widely used in plastic surgery because of various advantages; however, calcification in surface of implant(as a chemical resistance) may transform or destroy the high molecular biomaterial when it stays too long within the human body. The purpose of this study is to determine the relationship between calcification and the histological disparities of the tissues surrounding the area adjoining the silicone nasal implant by examining the regional characteristics of calcium deposits in the silicone nasal implant via elemental analyses using EDX(energy-dispersive X-ray analysis) and ultrastructural analyses using SEM(scanning electron microscopy). The subjects of the study were 19 silicone nasal implants removed by revision rhinoplasty, all displaying calcification. According to the tissue characters, the implant surface was divided into 4 zones with the rhinion as the basis. For each zone, elemental and ultrastructural analyses were performed. Elemental analysis revealed that the calcium deposits consisted of Ca and P only. There were no statistically significant disparities among the ratios between Ca and P according to the zones. Ultrastructural analysis showed acellular mineral-like deposits coalesced to create amorphous deposits in all zones; however, in zones 1 and 3(more pressurized zones by periosteum or nasal bone), additional flaky cylinder-shaped calcium deposits were detected. Thus, it seems that the histological disparities in the surrounding tissues do not affect the components and their proportions in the calcification process. However, it can be inferred that the physical environment due to the histological disparities in the surrounding tissues affects the ultrastructures of calcium deposits.

Fusarium avenaceum에 의한 복숭아 신규 과실 썩음병 발생 보고 (First Report of Peach Fruit Rot Caused by Fusarium avenaceum in Korea)

  • 허아영;구영모;최영준;김상희;정규영;최형우
    • 식물병연구
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    • 제26권1호
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    • pp.48-52
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    • 2020
  • 2019년 7월 안동지역 노지 재배지에서 복숭아에 과실 썩음병 피해가 발생하였다. 피해 과실에서는 병이 진전됨에 따라, 썩음증상과 함께, 흰색과 자주색을 띄는 균사 및 포자가 관찰되었다. 병원균을 순수 분리한 뒤, 건전한 복숭아 과일에 접종하였을 때 동일한 과실 썩음 증상을 유도하였다. 분리된 병원균의 internal transcribed spacer (ITS), translation elongation factor 1-alpha (TEF) 그리고 β-tubulin (β-TUB) sequence 분석을 통해 Fusarium avenaceum으로 동정되었다. 따라서, 이 증상을 Fusarium avenaceum에 의한 "복숭아 과실 썩음병"으로 명명하고자 한다. 분리된 균주는 농촌진흥청 국립농업과학원 미생물 은행[Korean Agricultural Culture Collection(KACC)]에 기탁되었다(KACC accession number 48936).

나이트로사민류의 국내 정수장 분포 특성 및 위해성 평가 (Risk assessment and distribution characteristics of N-nitrosamines in drinking water treatment plants)

  • 손보영;이이내;양미희;박상민;표희수;이원석;박주현
    • 상하수도학회지
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    • 제32권5호
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    • pp.389-398
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    • 2018
  • A nationwide survey of 8 N-nitrosamines in finished water samples from drinking water treatment plants (DWTPs) in Korea was conducted. The samples were pre-treated by solid-phase extraction (SPE) and analyzed using a gas chromatography coupled with tandem mass spectrometry (GC-MS/MS). According to the study results, four N-nitrosamines (NDMA, NDEA, NMOR, NDBA) were detected for three consecutive years, NMEA and NPYR were only found in samples collected in 2013. Two of these N-nitrosamines, N-nitrosodimethylamine (NDMA) and N-nitrosodiethylamine (NDEA), have received attention and were the most commonly detected. The concentration of NDMA and NDEA in this study ranged from $0.002{\mu}g/L$ to $0.013{\mu}g/L$ and in $0.001{\mu}g/L$ to $0.008{\mu}g/L$, respectively. In comparison to studies performed in EPA(UCMR2), the concentrations of NDMA (from $0.002{\mu}g/L$ to $0.630{\mu}g/L$) and NDEA (from $0.005{\mu}g/L$ to $0.100{\mu}g/L$) observed in the this study were low.

MBE 법으로 성장시킨 $Al_xGa_{1-x}As$ 에피층의 Photoreflectance 특성에 관한 연구 (The study on photoreflectance characteristics of the $Al_xGa_{1-x}As$ epilayer grown by MBE method)

  • 이정렬;김인수;손정식;김동렬;배인호;김대년
    • 한국진공학회지
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    • 제7권4호
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    • pp.341-347
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    • 1998
  • MBE법에 의해 성장된 AlxGa1-xAs 에피층의 특성을 photoreflectance(PR) 측정으로 분석하였다. Low power Franz Keldysh(LPFK)를 만족하는 GaAs 완충층에 의한 Frang-Keldysh Oscillation(FKO) 분석에서 띠간격에너지(E0) 값은 1.415eV, 계면 전기장(Ei) 은 1.05$\times$104V/cm, 운반자 농도(Ns)는 $1.3{\times}10^{15}\textrm{cm}^{-3}$이였다. PR상온 스펙트럼 분석에서 Eo(AlxGa1-xAs) 신호 아래 $A^*$피크는 시료 성장시 존재하는 불순물 carbon에 의한 것으로 완충층 GaAs보다 다소 PR신호 세기가 낮고 왜곡된 신호를 나타내었다. 또한, GaAs완충층 의 트랩 특성시간은 약0.086ms정도이며, 1.42eV 부근 두 개의 중첩된 PR신호는 화학적 식 각으로 GaAs의 기판에 의해 나타나는 3차 미분형 신호와 GaAs완충층에 의해 나타나는 FKO신호가 중첩되어 나타남을 알 수 있었다.

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자연산 다묵장어, Lethenterone reissneri에서 발생한 물곰팡이병 원인체의 동정 (Identification of water mold from wild brook lamprey, Lethenterone reissneri)

  • 김형준;박정수;김성연;구자근;방인철;권세련
    • 한국어병학회지
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    • 제26권1호
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    • pp.39-44
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    • 2013
  • 자연산 다묵장어, Lethenterone reissneri에서 발생한 물곰팡이병의 원인체를 형태학적 및 유전학적 연구를 통하여 동정하였다. 분리균주는 격벽이 없는 균사를 형성하였고, 가늘고 긴 모양의 유주자낭 내에 활발한 운동성을 보이는 유주자가 여러 줄로 배열되었다가 유주자낭의 선단에서 휴면하지 않고 한꺼번에 방출되는 특징을 보였다. 한편 유성생식기관인 조란기와 조정기는 관찰되지 않았다. 또한 분리균주의 ITS sequence를 분석하고 Saprolegnia 속의 다른 분리균주와 유전학적 상관관계를 조사한 결과, S. parasitica가 속해있는 clade I에 분류되는 것을 확인할 수 있었다. 무성생식기관의 형태, 유주자 방출방식 및 ITS sequence의 phylogenetic analysis에 근거하여 자연산 다묵장어에서 관찰된 물곰팡이병의 원인체는 S. parasitica인 것으로 동정되었다.