• Title/Summary/Keyword: Molecular Characteristics

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Interaction of Norfloxacin with Super-Coiled DNA

  • Hwangbo, Hyun-Jung;Lee, Young-Ae;Park, Jung-Hag;Lee, Yong-Rok;Kim, Jong-Moon;Yi, Seh-Yoon;Kim, Seog K.
    • Bulletin of the Korean Chemical Society
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    • v.24 no.5
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    • pp.579-582
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    • 2003
  • Norfloxacin, that inhibits the action of topoisomerase Ⅱ, binds to wide variety of DNA. The binding mode of this drug to double- and super-coiled DNA (ds- and scDNA) is compared in this study by various spectroscopic methods, including absorption, fluorescence, and circular dichroism(CD) spectroscopy. Hypochromism in the absorption band, negative and positive induced CD bands (respectively in 240-260 nm and 270-300 nm region) are apparent for the norfloxacin that bound to both the dsDNA and scDNA. A decrease in fluorescence is also noticed in the presence of both DNAs. Since the spectroscopic characteristics are the same for both complexes, it is imperative that the binding mode of the norfloxacin is similar in ds- and scDNA. In the presence of $Mg^{2+}$, which is a cofactor in the topoisomerase Ⅱ action, the fluorescence intensity of the scDNA-norfloxacin complex increased and the resulting fluorescence intensity and shape was identical to that in the absence of scDNA. Therefore, the addition of an excess amount of $Mg^{2+}$ may result in the extrusion of norfloxacin from scDNA.

Characterization and Pathogenicity of Alternaria burnsii from Seeds of Cucurbita maxima (Cucurbitaceae) in Bangladesh

  • Paul, Narayan Chandra;Deng, Jian Xin;Lee, Hyang Burm;Yu, Seung-Hun
    • Mycobiology
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    • v.43 no.4
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    • pp.384-391
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    • 2015
  • In the course of survey of endophytic fungi from Bangladesh pumpkin seeds in 2011~2012, two strains (CNU111042 and CNU111043) with similar colony characteristics were isolated and characterized by their morphology and by molecular phylogenetic analysis of the internal transcribed spacer, glyceraldehydes-3-phosphate dehydrogenase (gpd), and Alternaria allergen a1 (Alt a1) sequences. Phylogenetic analysis of all three sequences and their combined dataset revealed that the fungus formed a subclade within the A. alternata clade, matching A. burnsii and showing differences with its other closely related Alternaria species, such as A. longipes, A. tomato, and A. tomaticola. Long ellipsoid, obclavate or ovoid beakless conidia, shorter and thinner conidial size ($16{\sim}60[90]{\times}6.5{\sim}14[{\sim}16]{\mu}m$) distinguish this fungus from other related species. These isolates showed more transverse septation (2~11) and less longitudinal septation (0~3) than did other related species. Moreover, the isolate did not produce any diffusible pigment on media. Therefore, our results reveal that the newly recorded fungus from a new host, Cucurbita maxima, is Alternaria burnsii Uppal, Patel & Kamat.

A New Report on Edible Tropical Bolete, Phlebopus spongiosus in Thailand and Its Fruiting Body Formation without the Need for a Host Plant

  • Kumla, Jaturong;Suwannarach, Nakarin;Lumyong, Saisamorn
    • Mycobiology
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    • v.48 no.4
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    • pp.263-275
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    • 2020
  • Phlebopus spongiosus is a well-known edible ectomycorrhizal mushroom indigenous to southern Vietnam. The mushroom specimens collected from northern Thailand in this study were identified as P. spongiosus. This identification was based on morphological characteristics and the multi-gene phylogenetic analyses. Pure cultures were isolated and the relevant suitable mycelial growth conditions were investigated. The results indicated that the fungal mycelia grew well on L-modified Melin-Norkans, and Murashige and Skoog agar all of which were adjusted to a pH of 5.0 at 30 ℃. Sclerotia-like structures were observed on cultures. The ability of this mushroom to produce fruiting bodies in the absence of a host plant was determined by employing a bag cultivation method. Fungal mycelia completely covered the cultivation substrate after 90-95 days following inoculation of mushroom spawn. Under the mushroom house conditions, the highest amount of primordial formation was observed after 10-15 days at a casing with soil:vermiculite (1:1, v/v). The primordia developed into a mature stage within one week. Moreover, identification of the cultivated fruiting bodies was confirmed by both morphological and molecular methods. This is the first record of P. spongiosus found in Thailand and its ability to form fruiting bodies without a host plant.

A study on the dielectric dispersion of vulcanized natural rubber (가황에 의한 천연고무의 유전분산에 관한연구)

  • Lee, Joon-Ung;Kim, Hak-Ju
    • Elastomers and Composites
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    • v.18 no.2
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    • pp.51-59
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    • 1983
  • The dielectric properties of polymers are very important when investigating the molecular structure of polymers. The characteristics of the dielectric absorption in vulcanized natural rubber were studied in frequency ranging from 10[KHz] to 32[MHz] at the temperature of 25[$^{\circ}C$]. As a result of the study, it has been confirmed that natural rubber vulcanized below 4phr leads to two kinds of dielectric losses due to the interfacial polarization and the dipole polarization by sulfur, and of above 7[%] was only a loss due to the dipole polarization by sulfur. Futhermore, the dielectric loss maximum $tan{\delta}$ spectrum, removed to the low frequency in accordance with increasing sulfur, depends greatly on sulfur. The volume resistivity of $10^{7}{\sim}10^{11}[{\Omega}{\cdot}cm}]$, regardless of whether the crosslinking of rubber is weakened by sulfur, was observed.

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Characteristics of Tetanus Toxoid Loaded in Biodegradable Microparticles (파상풍 톡소이드를 함유한 생체분해성 미립구의 특성)

  • 김지윤;김수남;백선영;이명숙;민홍기;홍성화
    • YAKHAK HOEJI
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    • v.44 no.4
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    • pp.293-299
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    • 2000
  • Biodegradable microspheres made from poly-lactide-co-glycolide polymers have been considered as a new delivery system for single-dose vaccine. Purified tetanus toxoid (TT) was encapsulated in poly-lactide(PLA) and poly-lactide-co-glycolide (PLGA) microparticles using a solvent evaporation method in a multiple emulsion system (water-in oil-in water). The morphology of 77-loaded microparticles was spherical and the suface of them was smooth. The particle size was in a range of 2-10. Protein loading efficiency was 68-97.8%. PLGA (85:15) microparticle showed the highest efficiency. Protein release pattern was influenced by polymer molecular weight and composition. The release rate of PLA(Mw 100,000) microsphere was higher than any other microspheres. In consequence of the hydrolysis of PLGA(50:50) microspheres, environmental pH decreased from 7.4 to 5.0. The PLA, PLGA (75:25) and PLGA (85:15) microshperes showed no significant pH change. The antigenicity or n in microshperes was assayed by indirect sandwich ELISA using equine polyclonal tetanus antitoxin for capture antibody and human polyclonal tetanus antitoxin for primary antibody. The antigenicity of TT in PLA (Mw 100,000), PLGA(50:50, Mw 100,000) and PLGA (75:25, Mw 73,300) after 30 days incubation showed 54, 40.9 and 76.7%, respectively.

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The Effects of Ammonium Ion and Salts on the Killing of Red Tides Organism; Cochlodinium polykrikoides and Gymnodinium sanguieum (적조생물, Cochlodinium polykrikoides와 Gymnodinium sanguieum의 사멸에 있어 암모니아염의 효과)

  • Sohn, Jae-Hak
    • Journal of Life Science
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    • v.15 no.4 s.71
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    • pp.578-583
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    • 2005
  • Cell-free culture broth of marine halophilic bacterium, Kordia algicida was shown to possess specific algicidal ability against red tide organism, Cochlodinium polykrikides. Physiochemical characteristics of algicidal material originated in the bacterial culture broth were analyzed that its molecular weight was estimated to a 3,000 dalton and it was stable in heat and pH treatment. The algicidal fraction against C. polykrikoides obtained from gel permeable chromatography contained high concentration of ammonium ion as analyzed by ICP/Mass spectrum. C. polykrikoides by the fraction was quickly lysed within 1 min. It was shown that the effective concentration for algicide against C. polykrikoides was over 1mM of ammonium chloride. On the other hand, other metal ions presented in the algicidal fraction showed no algicidal effect against C. polykrikoides. In additon, ammonium ion exhibited species-specific killing spectrum for two species of red tide organisms, C. polykrikoides and Gymnodinium sanguieum. Therefore, further researches on the killing mechanism against C. polykrikoides exerted by ammonium ion, and subsequent development of replaceable algicidal materials will perform to provide useful tools for the control of red tide.

Necroptosis Is a Mechanism of Death in Mouse Induced Hepatocyte-Like Cells Reprogrammed from Mouse Embryonic Fibroblasts

  • Lee, Yun-Suk;Park, Kyung-Mee;Yu, Lina;Kwak, Ho-Hyun;Na, Hee-Jun;Kang, Kyung-Sun;Woo, Heung-Myong
    • Molecules and Cells
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    • v.41 no.7
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    • pp.639-645
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    • 2018
  • Liver transplantation is recommended for patients with liver failure, but liver donors are limited. This necessitates the development of artificial livers, and hepatocytes are necessary to develop such artificial livers. Although induced hepatocyte-like cells are used in artificial livers, the characteristics of mouse induced hepatocyte-like cells (miHeps) reprogrammed with embryonic fibroblasts have not yet been clarified. Therefore, this study investigated the mechanisms underlying the survival, function, and death of miHeps. miHeps showed decreased cell viability, increased cytotoxicity, decreased hepatic function, and albumin and urea secretion at passage 14. Addition of necrostatin-1 (NEC-1) to miHeps inhibited necrosome formation and reactive oxygen species generation and increased cell survival. However, NEC-1 did not affect the hepatic function of miHeps. These results provide a basis for development of artificial livers using hepatocytes.

Synthesis and $CO_2$ Separation Characteristics of ZSM-5 Zeolite Composite Membranes (ZSM-5 제올라이트 복합분리막의 제조 및 $CO_2$ 분리 특성)

  • 현상훈;송재권;김준학
    • Proceedings of the Membrane Society of Korea Conference
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    • 1997.04b
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    • pp.29-29
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    • 1997
  • ZSM-5계 제올라이트는 직경이 약 6${\AA}$인 균일한 3차원 채널 형태의 기공을 형성하므로 이를 이용한 기체 분리막은 분자체가름(molecular sieving)이나 미세기공확산(micropore diffusion) 및 표면확산(surface diffusion) 메커니즘에 의해 최근 지구 온난화의 주범으로 지목되고 있는 CO$_2$ 기체에 대해 높은 분리 효율을 기대할 수 있으므로 ZSM-5 복합분리막의 제조 및 기체 투과 특성과 CO$_2$ 분리 특성에 대해 연구하였으며 다음과 같은 결과를 얻을 수 있었다. 콜로이달 실리카 졸에 질산 알루미늄, 수산화 나트륨 및 TPABr을 첨가한 혼합졸과 물유리를 증류수로 희석한 후 TPBr을 첨가한 용액을 각각 150~180${\AA}$의 온도 범위의 오토클레이브에서 수열 처리하여 ZSM-5와 실리카라이트를 합성하였다. 합성 제올라이트의 결정 구조는 사방정이었으나 450${\AA}$에서 하소하였을 때에는 단사정으로 전이됨과 동시에 채널 속을 채우고 있던 TPABr이 제거되면서 제올라이트의 3차원 채널 형태의 기공 구조가 생성되었다. 제올라이트 결정의 형상과 크기는 실리카 공급원과 반응용액/졸의 농도에 따라 매우 민감하게 변화되었다. 하소 제올라이트의 비표면적은 약 360 m$^2$/g 이었다. 합성 제올라이트의 표면은 소수성인 반면에 높은 CO$_2$ 흡착능을 갖고 있어서 CO$_2$ 분리용 막의 재료로써 적합하였다.

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Influence of GaAs/AlGaAs Superlattice Layers on Optical Properties of InAs Quantum Dots (InAs 양자점의 광학적 성질에 미치는 초격자층의 영향)

  • Jeong Yonkil;Choi Hyonkwang;Park Yumi;Hwang Sukhyon;Yoon Jin-Joo;Lee Jewon;Leem Jae-Young;Jeon Minhyon
    • Korean Journal of Materials Research
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    • v.14 no.2
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    • pp.146-151
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    • 2004
  • We investigated the effects of high potential barriers on the optical characteristics of InAs quantum dots (QDs) by using photoluminescence (PL) and photoreflectance (PR) spectroscopy. A sample with regular InAs quantum dots on GaAs was grown by molecular beam epitaxy (MBE) as a reference. Another InAs QDs sample was embedded in single AlGaAs barriers. On the other hand, a sample with GaAs/AlGaAs superlattice barriers was adopted for comparison with a sample with a single AlGaAs layer. In results, we found that the emission wavelength of QDs was effectively tailored by using high potential barriers. Also, it was found that the optical properties of a sample with QDs embedded in GaAs/AlGaAs superlattices were better than those of a sample with QDs embedded in a single layer of AlGaAs barriers. We believe that GaAs/AlGaAs superlattice could effectively prevent the generation of defects.

Isolation of the Biodegradable Peptide Polymer-Producing Bacterial Strain and Characterization of the Polymer Produced by This Strain (Peptide계 생분해성 고분자 생산균주의 분리 및 생성 고분자의 특성)

  • 이신영;강태수김갑수유주현
    • KSBB Journal
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    • v.8 no.3
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    • pp.209-216
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    • 1993
  • For the production of biodegradable polymers from microorganisms a bacterial strain producing a biopolymer was isolated from soil. The bacteriological characteristics of this strain and physicochemical Properties of the biopolymer produced were investigated. The bacterial strain was identified as an alkalophilic Alcaligenes sp. The Purified biopolymer treated with cetylpridinium chloride and acetone was identified as an acidic biopolymer having carboxyl groups and showed strong UV absorbance (at 210nm). The biopolymer was composed of 100% glutamic acid and glutamic acid existed as $\gamma$-polyglutamic acid($\gamma$-PGA) in the form of the $\gamma$-peptide bond. The equivalent weight of this $\gamma$-PGA was estimated about 350, indicating that one acidic fraction per 2.7 residue of $\gamma$-polyglutamic acid existed. The molecular weight was $6.5{\times}10^5$ Daltons.

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