• Title/Summary/Keyword: Molecular Characteristics

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Partial Characterization of Proteases from Culture Filtrate of Mycobacterium tuberculosis

  • Na, Byoung-Kuk;Song, Chul-Yong;Park, Young-Kill;Bai, Gill-Han;Ki, Sang-Jae
    • Journal of Microbiology
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    • v.34 no.2
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    • pp.198-205
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    • 1996
  • Two proteases were partially characterized from culture filtrate of Mycobacterium, tuberculosis KIT110. Their molecular weights were approximately 200 and 180 kDa, respectively and they exhibited similar enzymatic characteristics. These enzymes were inhibited significantly by EDTA and to some extent by EGTA. Their activity was enhanced by $Ca^{2+}$ and $Mg^{2+}$ to some degree. However, $Cu^{2+}$ and $Ag^{2+}$ completely inhibited the enzyme activity at the concentration of 2.5 and 5 mM, respectively. The optimal pH was 7.0 and optimal temperature was around $40^{\circ}C$. These enzymes were rapidly inactivated at $80^{\circ}C$. Therefore, they were heat-labile, neutral metalloproteases. These enzymes exhibited antigenicity shown by their reacting with sera from the partients with pulmonary tuberculosis. These enzymes were able to degrade serum proteins including hemoglobin, bovine serum albumin, lysozyme and immunoglobulin G and structural matrix protein such as type I collagen. Therefore, these enzymes may be thought to contribute to tissue necrosis and pathogenesis during infection.

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Analyses of Genetic Relationships of Collectorichum spp. Isolated from Sweet Persimon with RAPD and PCR-RFLP. (단감나무로부터 분리한 탄저병 병원균 Colletotrichum spp.의 RAPD와 PCR-RFLP를 이용한 유연관계 분석)

  • 김희종;엄승희;이윤수
    • Korean Journal of Microbiology
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    • v.38 no.1
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    • pp.19-25
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    • 2002
  • Colletotrichum species are important fungal pathogen that cause great damages on various host plant species worldwide. In Korea, Colletotrichum species cause massive economic losses on apple, peach, grape, and essecially, sweet persimon productions. In the past, Identification of the pathogen and the studies on the genetic relationships among the pathogenic isolates were mainly based on morphology, cultural characteristics, and the difference in pathogenicity. However, in recent years, these traditional methods have been replaced with molecular methods to solve the difficulty of classification on pathogens. Therefore, in this study, RAPD and PCR-RFLP methods were employed for the studies of genetic relationship among the different isolates of Colletotrichum species that cause damages on sweet persimon. As a results of genetic relationship analysis, Colletotrichum species tested were divided into two big groups or five small groups.

Study on The Characteristics of UV Modified PET Surface and Effects in an Electroless Plating Solution (UV 전처리 후 PET 표면의 성질과 무전해 구리 도금액 내에서의 영향에 관한 연구)

  • Lee, Geon-Hyeong;Lee, Hong-Gi;Heo, Jin-Yeong
    • Proceedings of the Korean Institute of Surface Engineering Conference
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    • 2015.11a
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    • pp.176-177
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    • 2015
  • 본 실험에서 PET 위 무전해 구리 도금을 위한 전처리 방법 중 하나인 UV 조사를 통해 전처리를 한 후 PET 표면의 특성과 염기성 무전해 도금액이 개질된 표면에 미치는 영향에 관한 연구를 하였다. 일반적으로 PET 표면을 개질시키기 위해 UVC(254nm) 파장을 이용하여 PET bond break (Chain Scission)을 이루는 것으로 알려진다. 이때 공기 중의 산소와 UV 조사를 통해 생성된 PET 내의 free radical과 산화 반응을 통해 친수성이 높은 표면을 형성하게 된다. PET 표면의 친수성을 측정하기 위해 접촉각 측정기가 사용되었으며, 표면의 거칠기 및 형상을 관찰하기 위해 AFM과 FE-SEM를 각각 이용하였다. 또한 PET 표면의 구조 변화는 XPS를 통해 분석을 진행 하였다. UV 조사 후 표면의 거칠기 및 친수성은 높아졌지만, 무전해 도금은 이루어지지 않았다. 분석 결과, 이는 표면에 형성된 Low Molecular Weight Oxidation Compound(LMWOC)가 염기성 수용액 내에서 용해되어 모두 씻겨 나가 표면에 형성된 Sn/Pd을 모두 떨어트린 것으로 판단되며, 위와같은 이유로 UV 조사 후 습식 공정에 적용하기 위해 표면개질 된 PET를 염기성 수용액을 통해 전처리가 필요한 것으로 사료된다.

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Systems Biology - A Pivotal Research Methodology for Understanding the Mechanisms of Traditional Medicine

  • Lee, Soojin
    • Journal of Pharmacopuncture
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    • v.18 no.3
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    • pp.11-18
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    • 2015
  • Objectives: Systems biology is a novel subject in the field of life science that aims at a systems' level understanding of biological systems. Because of the significant progress in high-throughput technologies and molecular biology, systems biology occupies an important place in research during the post-genome era. Methods: The characteristics of systems biology and its applicability to traditional medicine research have been discussed from three points of view: data and databases, network analysis and inference, and modeling and systems prediction. Results: The existing databases are mostly associated with medicinal herbs and their activities, but new databases reflecting clinical situations and platforms to extract, visualize and analyze data easily need to be constructed. Network pharmacology is a key element of systems biology, so addressing the multi-component, multi-target aspect of pharmacology is important. Studies of network pharmacology highlight the drug target network and network target. Mathematical modeling and simulation are just in their infancy, but mathematical modeling of dynamic biological processes is a central aspect of systems biology. Computational simulations allow structured systems and their functional properties to be understood and the effects of herbal medicines in clinical situations to be predicted. Conclusion: Systems biology based on a holistic approach is a pivotal research methodology for understanding the mechanisms of traditional medicine. If systems biology is to be incorporated into traditional medicine, computational technologies and holistic insights need to be integrated.

Expression Profiling of Genes involved in the Control of Pluripotency Using cDNA Microarray

  • Lee, Young-Jin;Hong, Seok-Ho;Nah, Hee-Young;Chae, Ji-Hyung;Jung, Ho-Sun;Kim, Beom-Sue;Kim, Chul-Geun
    • Proceedings of the KSAR Conference
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    • 2001.10a
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    • pp.18-24
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    • 2001
  • To identify genes implicated in the control of pluripotency as well as characteristics of stem cells, we analyzed expression profiles of genes derived from mouse morulas, blastocysts, embryonic stem cells, mesenchymal stem cells, and uterus tissue using cDNA microarray. Comparative analyses of their expression profiles identified putative clones that expressed specifically in specific samples or not in a specific sample. The expression pattern of these candidate clones was analyzed using RT-PCR and non-radioactive in situ hybridization. Functional annotation of these clones on pluripotency and stem cell plasticity is in ongoing. These studies may further our understanding on the nature of the stem cells and molecular mechanisms underlying many facets of mammalian development and differentiation.

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Fabrication and characteristics of MOSFET protein sensor using gold-black gate (Gold-Black 게이트를 이용한 MOSFET형 단백질 센서의 제조 및 특성)

  • Kim, Min-Suk;Park, Keun-Yong;Kim, Ki-Soo;Kim, Hong-Seok;Bae, Young-Seuk;Choi, Sie-Young
    • Journal of Sensor Science and Technology
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    • v.14 no.3
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    • pp.137-143
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    • 2005
  • Research in the field of biosensor has enormously increased over the recent years. The metal-oxide semiconductor field effect transistor (MOSFET) type protein sensor offers a lot of potential advantages such as small size and weight, the possibility of automatic packaging at wafer level, on-chip integration of biosensor arrays, and the label-free molecular detection. We fabricated MOSFET protein sensor and proposed the gold-black electrode as the gate metal to improve the response. The experimental results showed that the output voltage of MOSFET protein sensor was varied by concentration of albumin proteins and the gold-black gate increased the response up to maximum 13 % because it has the larger surface area than that of planar-gold gate. It means that the expanded gate allows a larger number of ligands on same area, and makes the more albumin proteins adsorbed on gate receptor.

Applications of Low-voltage Ohmic Process Combined with Temperature Control System to Enhance Salting Process of Pork

  • Hong, Geun-Pyo;Chun, Ji-Yeon;Choi, Mi-Jung
    • Food Science of Animal Resources
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    • v.32 no.3
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    • pp.293-300
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    • 2012
  • This study investigated the effects of a low-voltage ohmic heating process (2.5 and 3.8 V/cm) on the thawing characteristics and NaCl diffusion of pork. The thawing rate of pork was dependent on the applied voltages and brine salinities, and few differences were obtained in pork quality parameters (color, water-holding capacity, and shear force) regarding the different treatments. The NaCl concentration of pork after ohmic thawing was higher than that following brine-immersion thawing, however, the NaCl diffusion did not differ from when fresh meat was immersed in brine. For application of the ohmic process in fresh pork, various ohmic pulses were generated in order to prevent the meat from overheating, and the results indicated that the ohmic process was a better way to enhance NaCl diffusion compared with immersing pork at high temperature. Although the mechanisms involved in NaCl diffusion at low-voltage electric field strength were unclear, the present study demonstrated that the ohmic process has a potential benefit in the application of meat processing.

Case report on Spinpcerebellar Ataxia(SCA) with cerebellar vermis artophy (Cerebellar vermis atrophy로 인한 Spinocerebellar Ataxia환자(患者) 치험(治驗) 1례(1例) 보고(報告))

  • Cho Hyun-Yeul;Bae Eun-Jeong;Lee Kyung-Min;Soe Jung-Chul;Han Sang-Won
    • Korean Journal of Acupuncture
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    • v.19 no.2
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    • pp.79-85
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    • 2002
  • Objective : In 1983 Autosomal dominent spinocerebellar ataxia(ADCA) has been classified to four types by a useful clinical features according to Harding. Since 1993 ADCA referred to as SCA by molecular genetic characteristics. We focused on the improvement of clinical symptoms in SCA patient through oriental medical treatment. Methods & Results : The assessment included neurophysiological examination and clinical symptoms. For example slow saccade, gaze limitation, upward and lateral, nystagmus, truncal and gait ataxia. The patient(M/30) was clinically charaterized by ocular abnormalities, trunkal and gait ataxia and the MRI showed atrophy of cerebellar vermis. The patient was taken both common acupuncture and Dong-Si venepuncture on Hwasan with herbal medicine. Before the treatment Rt. ocular movement were slowed and a significant eye fixation was observed always in abduction and intermittently presented trunkal and gait ataxia. During the treatment trunkal and gait ataxia has not been presented and ocular obnomalities changed to normal state. This case suggests the possibility of oriental medical treatment on SCA but further observation is needed on this patient.

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The Effect of Water in Four Adenine-Thymine and Three Guanine-Cytosine Pairs: Combining Quantum and Statistical Mechanics

  • Lee, Jinkeong;Ham, Sihyun
    • Proceeding of EDISON Challenge
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    • 2015.03a
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    • pp.151-155
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    • 2015
  • The molecular interactions between the nucleic acid bases and water molecules are important in organism. Despite Adenine-Thymine Hoogsteen base pair and Guanine-Cytosine Watson-Crick base pair have been demonstrated to be most stable in a gas phase, the effect of water on the stability of these base pairs remains elusive. Here we report the structural and thermodynamic characteristics on possible Adenine-Thymine and Guanine-Cytosine base pairs in a gas phase as well as in an aqueous phase by using quantum mechanical method and statistical mechanical calculations. First, we optimized the direct base-pair interaction energies of four Adenine-Thymine base pairs (Hoogsteen base pair, reverse Hoogsteen base pair, Watson-Crick base pair, and reverse Watson-Crick base pair) and three Guanine-Cytosine base pairs (GC1 base pair, GC2 base pair, and Watson Crick base pair) in a gas phase at the $B3LYP/6-31+G^{**}$ level. Then, the effect of solvent was quantified by the electronic reorganization energy and the solvation free energy by statistical mechanical calculations. Thereby, we discuss the effect of water on the stability of Adenine-Thymine and Guanine-Cytosine base pairs, and argue why Adenine-Thymine Watson-Crick base pair and Guanine-Cytosine Watson-Crick base pair are most stable in an aqueous environment.

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Epoxide Hydrolase-catalyzed Hydrolytic Kinetic Resolution for the Production of Chiral Epoxides (에폭사이드 가수분해효소에 의한 동력학적 가수분해반응을 이용한 광학활성 에폭사이드 생산)

  • 이은열
    • KSBB Journal
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    • v.17 no.4
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    • pp.321-325
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    • 2002
  • Chiral epoxides are valuable intermediates for the asymmetric synthesis of enantiopure bioactive compounds. Microbial epoxide hydrolases (EHs) are newly discovered enzymes and versatile biocatalysts for the preparation of chiral epoxides by enantioselective hydrolysis of cheap and easily available racemic epoxide substrates. EHs are commercially potential biocatalysts due to their characteristics such as high enantioselectivity, cofactor-independent catalysis, and easy-to-Prepare catalysts. In this Paper, recent progresses in biochemistry and molecular biology of EH and developments of novel reaction systems are reviewed to evaluate the commercial feasibility of EH-catalyzed hydrolytic kinetic resolution for the production of chiral epoxides.