• Genes and Genomics
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• 제40권11호
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• pp.1213-1223
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• 2018

Pelagic larval dispersal habits influence the population genetic structure of marine mollusk organisms via gene flow. The genetic information of the clam Gomphina aequilatera (short larval stage, 10 days) which is ecologically and economically important in the China coast is unknown. To determine the influence of planktonic larval duration on the genetic structure of G. aequilatera. Mitochondrial markers, cytochrome oxidase subunit i (COI) and 12S ribosomal RNA (12S rRNA), were used to investigate the population structure of wild G. aequilatera specimens from four China Sea coastal locations (Zhoushan, Nanji Island, Zhangpu and Beihai). Partial COI (685 bp) and 12S rRNA (350 bp) sequences were determined. High level and significant $F_{ST}$ values were obtained among the different localities, based on either COI ($F_{ST}=0.100-0.444$, P<0.05) or 12S rRNA ($F_{ST}=0.193-0.742$, P<0.05), indicating a high degree of genetic differentiation among the populations. The pairwise $N_m$ between Beihai and Zhoushan for COI was 0.626 and the other four pairwise $N_m$ values were >1, indicating extensive gene flow among them. The 12S rRNA showed the same pattern. AMOVA test results for COI and 12S rRNA indicated major genetic variation within the populations: 77.96% within and 22.04% among the populations for COI, 55.73% within and 44.27% among the populations for 12S rRNA. A median-joining network suggested obvious genetic differentiation between the Zhoushan and Beihai populations. This study revealed the extant population genetic structure of G. aequilatera and showed a strong population structure in a species with a short planktonic larval stage.

• Tuberculosis and Respiratory Diseases
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• 제42권4호
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• pp.522-534
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• 1995

연구배경: 내독소에 의한 급성 폐손상의 발병기전에서 산소기가 중요한 역할을 한다는 사실은 잘 알려져 있다. 세포내에는 이러한 산소기에 의한 세포의 손상을 방지하는 정상 방어기전으로 여러 항산화효소가 존재하는데, 이중 SOD는 세포대사과정이나 외부 자극에 의해 생성된 superoxide로부터 세포의 손상을 방지하는 역할을 한다. 세포내 SOD는 주로 이중체의 구조로 세포질에 존재하는 CuZnSOD와 사중체의 구조로 미토콘드리아에 존재하는 MnSOD의 두 종류가 알려져 있으나, 폐포대식세포에서의 SOD mRNA 발현 및 그 조절기전에 대해서는 확실히 규명되어 있지 않다. 본 연구의 목적은 백서의 폐포대식세포에서 내독소 자극에 의한 MnSOD와 CuZnSOD mRNA 발현양상을 관찰하고 내독소 자극시 니타나는 SOD mRNA 발현의 조절기전을 규명하는데 있다. 방법: 백서의 기관지폐포세척액에서 얻은 세포를 plastic plate에 부착시켜 폐포대식세포를 분리한 후 내독소를 자극하여 내독소 용량($0.01{\mu}g/ml{\sim}10{\mu}g/ml$)과 자극시간(0, 2, 4, 8, 24 hrs)에 따른 MnSOD와 CuZnSOD MnSOD 발현양상을 Northern blot analysis를 시행하여 관찰하였다. 다음 단계로 MsSOD와 CuZnSOD mRNA 발현의 조절기전을 밝히고자 폐포대식세포를 각각 AD($5{\mu}g/ml$) 또는 CHX($5{\mu}g/ml$)로 전처치한 후 내독소로 자극하여 MnSOD와 CuZnSOD mRNA의 발현양상을 관찰하였다. 한편 내독소 투여가 SOD mRNA의 안정성을 변화시키는지 여부를 평가하기 위해 폐포대식세포를 대조군과 투여군으로 나누어 SOD mRNA의 분해속도를 비교하였다. 총 세포내 RNA는 guanidinium thiocyanate/phenol/chloroform법을 이용하여 추출하였고, Northern blot analysis는 $^{32}P$로 표지된 백서의 MnSOD와 CuZnSOD cDNAs를 이용하여 시행하였다. 결과: 백서의 폐포대식세포에서 MnSOD mRNA의 발현은 내독소 투여량의 증가세 따라 증가되었고 내독소를 투여하고 8시간후에 정점을 이루었으나, CuZnSOD mRNA의 발현은 내독소의 용량 및 투여후 반응시간에 따라 변화하지 않았다. 내독소 투여후 MnSOD mRNA의 발현증가는 AD 또는 CHX 각각의 전처치에 의해 모두 억제되었다. MnSOD mRNA의 안정성은 내독소 투여에 의해 변화하지 않았다. 결론: 이상의 결과로 백서의 폐포대식세포는 내독소 자극에 반응하여 SOD를 생성하는 중요세포이고, 내독소에 의한 MnSOD mRNA의 발현은 전사단계에서 조정되며 mRNA의 안정성을 변화시키지 않고 새로운 단백의 합성이 필요한 것으로 사료된다.

• Journal of Genetic Medicine
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• 제16권2호
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• pp.55-61
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• 2019

Purpose: Genetic defects in the nuclear-encoded mitochondrial aminoacyl-tRNA synthetases were first identified as causes of various disorders in 2007. Variants in IARS2, which encodes a mitochondrial isoleucyl-tRNA synthetase, were first reported in 2014. These variants are associated with diverse phenotypes ranging from CAGSSS (CAtaracts, Growth hormone deficiency, Sensory neuropathy, Sensorineural hearing loss, and Skeletal dysplasia) and Leigh syndrome to isolated nonsyndromic cataracts. Here, we describe the phenotypic and genetic spectrum of Korean patients with IARS2-related disorders. Materials and Methods: Using whole-exome sequencing followed by Sanger sequencing, we identified five patients with IARS2 mutations. Their medical records and brain magnetic resonance images were reviewed retrospectively. Results: All five patients presented with developmental delay or regression before 18 months of age. Three patients had bilateral cataracts, but none had hearing loss or sensory neuropathy. No evidence of skeletal dysplasia was noted, but two had short stature. One patient had cardiomyopathy and another exhibited renal tubulopathy and hypoparathyroidism. Their brain imaging findings were consistent with Leigh syndrome. Interestingly, we found the recurrent mutations p.R817H and p.V105Dfs*7 in IARS2. Conclusion: To our knowledge, this is the first report of Korean patients with IARS2-related disorders. Our findings broaden the phenotypic and genotypic spectrum of IARS2-related disorders in Korea and will help to increase clinical awareness of IARS2-related neurodegenerative diseases.

• Journal of Ginseng Research
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• 제41권3호
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• pp.392-402
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• 2017

Background: Previously, we reported that Korean Red Ginseng inhibited liver fibrosis in mice and reduced the expressions of fibrogenic genes in hepatic stellate cells (HSCs). The present study was undertaken to identify the major ginsenoside responsible for reducing the numbers of HSCs and the underlying mechanism involved. Methods: Using LX-2 cells (a human immortalized HSC line) and primary activated HSCs, MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide) assays were conducted to examine the cytotoxic effects of ginsenosides. $H_2O_2$ productions, glutathione contents, lactate dehydrogenase activities, mitochondrial membrane permeabilities, apoptotic cell subpopulations, caspase-3/-7 activities, transferase dUTP nick end labeling (TUNEL) staining, and immunoblot analysis were performed to elucidate the molecular mechanism responsible for ginsenoside-mediated cytotoxicity. Involvement of the AMP-activated protein kinase (AMPK)-related signaling pathway was examined using a chemical inhibitor and small interfering RNA (siRNA) transfection. Results and conclusion: Of the 11 ginsenosides tested, 20S-protopanaxadiol (PPD) showed the most potent cytotoxic activity in both LX-2 cells and primary activated HSCs. Oxidative stress-mediated apoptosis induced by 20S-PPD was blocked by N-acetyl-$\text\tiny L$-cysteine pretreatment. In addition, 20S-PPD concentration-dependently increased the phosphorylation of AMPK, and compound C prevented 20S-PPD-induced cytotoxicity and mitochondrial dysfunction. Moreover, 20S-PPD increased the phosphorylation of liver kinase B1 (LKB1), an upstream kinase of AMPK. Likewise, transfection of LX-2 cells with LKB1 siRNA reduced the cytotoxic effect of 20S-PPD. Thus, 20S-PPD appears to induce HSC apoptosis by activating LKB1-AMPK and to be a therapeutic candidate for the prevention or treatment of liver fibrosis.

• 대한유전성대사질환학회지
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• 제23권1호
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• pp.25-30
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• 2023

아미노아실-tRNA 합성효소는 단백질을 만드는 번역(translation)단계에서 아미노산을 활성화시키고 적절한 아미노산을 해당 tRNA에 결합을 시키는 중요한 효소이며, IARS2 유전자는 미토콘드리아에서 작용하는 isoleucylt-RNA 합성효소를 코딩하는 핵의 유전자이다. IARS2 유전자의 돌연변이는 백내장, 성장 호르몬 결핍, 감각 신경병증, 감각신경성 난청, 골격 형성 이상 증후군의 특징을 보이는 CAGSSS (MIM#616007)라는 희귀 질환의 원인으로 상염색체 열성으로 유전된다. 현재까지 이 증례 보고를 포함하여 29명의 환자만이 보고가 되었음에도 단지 백내장의 증상만 나타냈던 환자, 그리고 신경학적 증상이 두드러지는 Leigh 증후군을 유발하면서 여러 장기에 영향을 주는 환자 등 다양한 임상 증상의 환자가 보고되었다. Leigh 증후군은 드문 진행성 신경 퇴행성 미토콘드리아 질환이다. 이 연구는 IARS2 연관된 Leigh 증후군의 환자에서 방광 기능의 이상의 표현형을 보고하는 첫 증례 보고로 의미가 있다. 5세의 한국인 여아는 복부 팽만을 동반한 복통으로 응급실에 내원하였으며, 복부CT에서 명백한 폐쇄 증상, 급성 신장염, 요로감염의 징후가 보이지 않으면서 현저하게 팽창된 방광이 확인 되었다. 여아의 발달 상태는 발달 저하를 보이면서, 6개월에 뒤집기가 가능하였지만 이후는 신경학적 퇴행으로 내원당시에는 목 가누기도 되지 않고, 의미 있는 단어를 말하지도 못하는 전반적인 발달 지연 상태였다. 2세에는 양쪽 눈의 백내장이 발생하여 수술한 과거력이 있었다. 뇌 MRI T2 강조영상에서는 양쪽에 대칭적으로 기저핵(basal ganglia)에 고신호를 보였고, 이는 Leigh 증후군에 전형적인 영상의 특징이다. Whole mitochondrial genome의 유전자검사를 시행했지만 의미 있는 돌연변이가 확인되지 않았으므로, Whole exome sequencing 검사를 시행했으며, IARS2 유전자의 이중대립유전자 돌연변이(biallelic mutation), c.2446C>T (p. Arg816Ter)와 c.2450G>A (p. Arg817His)가 확인이 되었고 부모님은 보인자였다. 현재까지 IARS2 유전자의 돌연변이를 가지는 환자 중에서 신경학적 발달 저하, 인지장애 등의 증상이 동반된 환자는 신체의 다중장기질환의 증상으로 심비대, 부정맥, 빈혈, 측만증, 청력 저하, 뇌전증, 부갑상선저하증이 알려졌으나, 이 연구에서 IARS2 유전자 돌연변이를 가진 환자에서 배뇨근의 이상을 동반한 과민성방광증상을 확인하여 방광이상증상을 처음 보고를 한다. IARS2 유전자의 이상이 확인된 환자에서는 하부요로이상증상이 동반 가능성에 대해서 인지하는 것이 필요하고, 증상이 보이면 배뇨 일지나 요역동학검사를 통해서 조기에 진단 및 치료가 환자의 관리에 필요할 수 있다. 이 증례 보고는 IARS2 유전자의 임상 양상의 확대 및 유전자의 이해를 넓히는데 기여할 것으로 기대된다.

• Fisheries and Aquatic Sciences
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• 제17권2호
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• pp.263-267
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• 2014

A single juvenile pomacentrid specimen (5.9 mm standard length) was collected from the Korea Strait in October 2010. The specimen is characterized by punctate-stellate melanophores scattered on the operculum and dorso-ventral region in front of the caudal peduncle, the lack of melanophores on the posterior end of the anal fin base, the presence of 14 spines and 14 soft rays on the dorsal fin, and the presence of 2 spines and 12 soft rays on the anal fin. A molecular analysis based on mitochondrial DNA 16S rRNA sequences showed that this specimen is closely related to adult Chromis mirationis (d = 0.002), but that it differs from Chromis notata (d = 0.017). Juvenile C. mirationis differ from juvenile C. notata in having no melanophores on the posterior end of the anal fin base. We propose a new Korean name, "tti-ja-ri-dom" for C. mirationis.

• Fisheries and Aquatic Sciences
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• 제18권1호
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• pp.109-113
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• 2015

Three leptocephali (22.2, 22.7, 56.0 mm in total length) collected from the East/Japan Sea were identified by morphological and genetic analyses as belonging to the genus Scolecenchelys (Anguilliformes, Ophichthidae). Morphologically, the specimens were characterized by 148-158 myomeres, 10 gut swellings, dorsal fin origin above middle of the body, and 6 postanal melanophores between the anus and the caudal margin. An analysis of an 849-base pair 12S rRNA sequence of mitochondrial DNA showed that sequences are concordant with those of adult Scolecenchelys fuscogularis (genetic distance = 0.001). Furthermore total number of myomeres is consistent with the total number of vertebrae in adult S. fuscogularis. This study provides the first description of the morphological characteristics of S. fuscogularis leptocephali and their variations with size. The Korean name of S. fuscogularis is "Ga-neun-mul-baem", established by Ji et al. (2012).

• 한국수산과학회지
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• 제46권5호
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• pp.589-593
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• 2013

Scolecenchelys borealis was first added to the Korean fish fauna based on one leptocephalus specimen (total length (TL) 59.2 mm) collected from Dokdo, in the East Sea. Recently, however, Scolecenchelys borealis has been treated as a junior synonym of Scolecenchelys aoki, necessitating review of the scientific name S. borealis. This study describes the morphological characteristics of S. aoki based on an adult specimen (TL 230.0 mm) collected from the sea south of Korea and compares its mitochondrial DNA 12S rRNA sequence with that of the S. borealis leptocephalus. The adult S. aoki is characterized by several morphological features: vertebral formula 59-55-135; preanal lateral pores 55; infraorbital pores two; teeth on upper jaw visible externally when the mouth is closed; the dorsal fin originates just behind the anus; both jaws and vomerine teeth are conical, arranged in two rows. An analysis of an 886-base paire sequence of the 12S rRNA showed that adult S. aoki was concordant with the S. borealis leptocephalus (sensu Ji et al., 2012), indicating that both are the same species.

• 한국축산식품학회지
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• 제35권3호
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• pp.382-388
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• 2015

A duplex real-time polymerase chain reaction (PCR) based assay for the detection of porcine and horse meat in sausages was designed by using EvaGreen fluorescent dye. Primers were selected from mitochondrial 12S rRNA and 16S rRNA genes which are powerful regions for identification of horse and porcine meat. DNA from reference samples and industrial products was successfully extracted using the GIDAGEN® Multi-Fast DNA Isolation Kit. Genomes were identified based on their specific melting peaks (Mp) which are 82.5℃ and 78℃ for horse and porcine, respectively. The assay used in this study allowed the detection of as little as 0.0001% level of horse meat and 0.001% level of porcine meat in the experimental admixtures. These findings indicate that EvaGreen based duplex realtime PCR is a potentially sensitive, reliable, rapid and accurate assay for the detection of meat species adulterated with porcine and horse meats.

• BMB Reports
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• 제41권10호
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• pp.728-732
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• 2008

FoxO3a is a member of the forkhead box class O (FoxO) transcription factor family and an important regulator of apoptosis. This work aimed to elucidate the involvement of FoxO3a in transforming growth factor-${\beta}1$(TGF-${\beta}1$)-induced apoptosis in FaO rat hepatoma cells. TGF-${\beta}1$ caused a time-dependent activation of FoxO3a and a subsequent increase in FoxO response-element-containing luciferase reporter activity, which was Akt-sensitive. The FaO cells stably transfected with a wild type FoxO3a were more susceptible to the formation of apoptotic bodies, populations of sub-G1 apoptotic cells, and collapse of the mitochondrial-membrane potential triggered by TGF-${\beta}1$. In contrast, transfection with small-interfering RNA (siRNA) oligonucleotide specific for FoxO3a significantly inhibited caspase activation in FaO cells treated with TGF-${\beta}1$. It thus appears that FoxO3a plays a crucial mediatory role in the TGF-${\beta}1$ signaling pathway leading to apoptosis.