• 미생물학회지
• /
• 제55권3호
• /
• pp.220-225
• /
• 2019

최근 10년간 미생물생태분석 기반의 연구는 차세대염기서열분석법이 개발된 이래로 지속적으로 증가하고 있다. 장내미생물생태와 건강의 연관성은 미생물 생태학 분야에 있어서 중요한 결과로 여겨지고 있다. 미생물 군집 분석은 주로 16S rRNA 유전자 가변 영역의 염기서열을 통해 분석되지만 이는 미생물의 활성 정보를 제공하지 않는다. 본 연구에서는 cDNA 기반의 미생물 생태분석을 수행하고 DNA 및 cDNA기반의 미생물생태분석 결과를 비교하였다. 두 가지의 서로 다른 접근법이 Butyrate producer와 probiotics와 같이 장내 대사과정에서 중요한 미생물의 abundance 뿐만 아니라 비만 지표로 알려진 Firmicutes 와 Bacteroidetes의 비율에 있어서 차이가 있음을 나타내었다. 따라서, cDNA 기반 미생물 군집은 이전에 수행된 DNA 기반 미생물 군집 분석과 비교하여 장내미생물생태의 역할과 관련된 또 다른 분석 방향성을 제공한다.

• 한국미생물·생명공학회지
• /
• 제34권2호
• /
• pp.101-108
• /
• 2006

Phytophthora sp.의 균사성장을 특이적으로 저해하는 토양 미생물인 YNB54 균주의 정확한 분류적 위치를 밝히기 위해 Biolog GN2, API 20E와 같은 상업적 생화학 kit, 16S rDNA, DAN-DNA hybridization, GC함량, MIDI 등의 분석을 수행하였다. 다양한 생화학적 kit를 사용한 동정 결과는 이 균주가 다른 어떤 종보다 Enterobacter cloacae와 E. cancerogenus에 보다 더 가까움을 보여주었다. 또한 DAN-DNA hybridization, GC함량, MIDI 분석의 결과들 역시 다른 속 (Citerobacter, Klebsiella, Leclercia)보다 Enterobacter 속에 더 유사함을 암시해 주었다. 그러나 16S rDNA분석에서 이 균주는 Citrobacter freundii(99.4%)와 동일 그룹으로 구분되었지만 Enterobacter, Leclecia, Klebsiella 속 등과도 98%이상의 상동성을 보여주는 polyphyletic 특성을 보였다. 결론적으로 YNB54의 분류 동정을 위한 우리의 조사들은 이 균주가 유전적으로 다양하고 지금까지 아는 것보다 분류학적으로 더 복잡함을 암시해줌에도 불구하고 Enterobacter속임이 가장 유력하다는 것을 보여 주었다.

• Journal of Microbiology and Biotechnology
• /
• 제28권11호
• /
• pp.1876-1882
• /
• 2018

A series of pentacyclic triterpenoids similar to glycyrrhetinic acid were designed and synthesized via the combination of chemical modification and microbial catalysis. All products were screened for the glycogen phosphorylases inhibitory activities in vitro. Within this series of derivatives, compound 5 displayed good inhibitory activities with $IC_{50}$ value of $27.7{\mu}M$, which is better than that of the other derivatives and glycyrrhetinic acid. Structure-activity relationship (SAR) analysis of these inhibitors was also discussed.

• 한국식품저장유통학회지
• /
• 제5권1호
• /
• pp.13-21
• /
• 1998

Korean medicinal herb extracts(KMHE) were applied to the preservation of greenhouse produce in order to prove their effectiveness. KMHE showed remarkable antimicrobial effects against Bacillus cereus, Peudomonas syringae, and Corynebacterium xerosis causing the postharvest decay of greenhouse produce. Among KMHE the extracts of Rheum palmatum L. and Coptis chinensis Franch most obviously inhibited the growth of microorganims causing the Postharvest decay of greenhouse produce, which destroyed to undetectable levels when treated with more than 500ppm of KMHE. The activities of KMHE were stable in the wide spectrum of pH and temperature. Direct visualization of microbial cells by using both transmission electron microscope and scanning electron microscope showed microbial cell membrane the function of which was destroyed by treating with the dilute solutions of KMHE. This change of cellular membrane permeability could be identified in the experiment that O-nitrophenyl-$\beta$-D-galactopyranoside(ONPG), the artificial substrate of $\beta$-galactosidase, was hydrolyzed in the presence of KMHE, indicating that the membrane was perturbed by KMHE.

• Environmental Sciences Bulletin of The Korean Environmental Sciences Society
• /
• 제3권3호
• /
• pp.151-158
• /
• 1999

Biogenic source emissions refer to naturally occuring emissions from vegetation, microbial activities in soil, lightening, and so on. Vegetation is especially known to emit a considerable amout of volatile organic compounds into the atmosphere. Therefore, biogenic source emissions are an important input to photochemical air quality models. since most biogenic source emissions are calculated at the county-level, they should be geographically allocated to the computational grid cells of a photochemical air quality model prior to running the model. The traditional method for the spatial allocation for biogenic source emissions has been to use a "spatial surrogate indicator" such as a county area. In order to examine the applicability of such approximations, this study developed more detailed surrogate indicators to improve the spatial allocation method for biogenic source emissions. Due to the spatially variable nature of biogenic source emissions, Geographic Information Systems(GIS) were introduced as new tools to develop more detailed spatial surrogate indicators. Use of these newly developed spatial surrogate indicators for biogenic source emission allocation provides a better resolution than the standard spatial surrogate indicator.indicator.

• Journal of Applied Biological Chemistry
• /
• 제50권2호
• /
• pp.88-96
• /
• 2007

Organic farming systems based on ecological concepts have the potential to produce sustainable crop yields with no decline in soil and environmental qualities. Recent expansion of sustainable agricultural systems, including organic farming, has brought about need for development of sustainable farming systems based on value judgments for key properties of importance for farming. Chemical and microbiological properties were chosen as indicators of soil quality and measured at soil depth intervals of 5-20 and 20-35 cm in conventional and organic-based apple orchards located in Yeongchun, Gyeongbuk. The orchards were two adjacent fields to ensure the same pedological conditions except management system. Soil pH in organic farming was around 7.5, whereas below 6.0 in conventional farming. Organic farming resulted in significant increases in organic matter and Kjeldahl-N contents compared to those found with conventional management. Microbial populations, biomass C, and enzyme activities (except acid phosphatase) in apple orchard soil of organic farming were higher than those found in conventional farming. Higher microbial quotient ($C_{mic}/C_{org}$ ratio) and lower microbial metabolic quotient for $CO_2(qCO_2)$ in organic farming confirmed that organic farming better conserves soil organic carbon. Biological soil quality indicators showed significant positive correlations with soil organic matter content. These results indicate organic-based farming positively affected soil organic matter content, thus improving soil chemical and biological qualities.

• 한국환경보건학회지
• /
• 제34권6호
• /
• pp.403-413
• /
• 2008

Toxic effect of methyl tert-butyl ether (MTBE), tert-butyl alcohol (TBA) and formaldehyde (FA) on microbial activity and diversity was compared in rice field, leek patch, and tidal mud flat soil samples. MTBE, TBA and FA with different concentrations were added into microcosms containing these soil samples, and placed at room temperature for 30 days. Then the microbial activities such as dehydrogenase and viable cell numbers and microbial community using a DGGE (Denaturing gradient gel electrophoresis) fingerprinting method were measured. Among the samples, dehydrogenase activity in rice field was inhibited the most by MTBE, TBA and FA. The toxic effect was higher according to the following orders: FA > MTBE > TBA. Dominant species in the microcosms contaminated with MTBE, TBA and FA were Chloroflex, Bacilli, gamma-proteobacteria in the rice field sample, Sphingobacteria, Flavobacteria, Actinobacteria, Bacilli, gamma-proteobacteria in the leek patch sample, and Sphingobacteria, Flavobacteria, delta-proteobacteria, gamma-proteobacteria in the tidal mud flat sample.

• Journal of Microbiology and Biotechnology
• /
• 제34권7호
• /
• pp.1501-1510
• /
• 2024

Inflammatory bowel disease (IBD), characterized by chronic inflammation of the gut, is caused by several factors. Among these factors, microbial factors are correlated with the gut microbiota, which produces short-chain fatty acids (SCFAs) via anaerobic fermentation. Fermented foods are known to regulate the gut microbiota composition. Ganjang (GJ), a traditional fermented Korean soy sauce consumed worldwide, has been shown to exhibit antioxidant, anticancer, anti-colitis, and antihypertensive activities. However, its effects on the gut microbiota remain unknown. In the present study, we aimed to compare the anti-inflammatory effects of GJ manufactured using different methods and investigate its effect on SCFA production in the gut. To evaluate the anti-inflammatory effects of GJ in the gut, we performed animal experiments using a mouse model of dextran sulfate sodium (DSS)-induced colitis. All GJ samples attenuated DSS-induced colitis symptoms, including reduced colonic length, by suppressing the expression of inflammatory cytokines. In addition, GJ administration modulated SCFA production in the DSS-induced colitis model. Overall, GJ exerted anti-inflammatory effects by reducing DSS-induced symptoms via regulation of inflammation and modulation of SCFA levels in a DSS-induced colitis model. Thus, GJ is a promising fermented food with the potential to prevent IBD.

• Asian-Australasian Journal of Animal Sciences
• /
• 제2권3호
• /
• pp.485-486
• /
• 1989

• Asian-Australasian Journal of Animal Sciences
• /
• 제2권3호
• /
• pp.400-401
• /
• 1989