• Title/Summary/Keyword: Mapping work

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Identification of Diachea leucopodia on Strawberry from Greenhouse in Korea

  • Lee, Jung-Han;Han, Ki-Soo;Bae, Dong-Won;Kim, Dong-Kil;Kim, Hee-Kyu
    • Mycobiology
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    • v.36 no.3
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    • pp.143-147
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    • 2008
  • We have detected the slime mold, Diachea leucopodia (GNU06-10) in a strawberry greenhouse located in Sancheong-gun, Gyeongnam. Typical fruiting bodies had developed gregariously on the strawberry leaves, petioles, and plant debris on ground soil habitat, and also surprisingly on plastic pipes and a vinyl covering. Field samples were examined via stereomicroscopy, light microscopy, and SEM for the determination of morphological characteristics. Dark-brown to black spores formed gregariously within the stipitate cylindrical sporangium, and were covered by an iridescent peridium, which may be intact at maturity, or may have disintegrated. The upper portion of the peridium generally breaks up to expose the spores, whereas the lower portion was usually persistent. The results of energy dispersive X-ray spectrometer (EDS) analysis showed that lime was present in the stalk and columella but absent from the spores, capillitium, and peridium. The above characteristics confirm its taxonomic position in the genus Diachea. However, this genus is intermediate in character between the Physarales and Stemonitales of the Myxogastromycetidae. Hence, this genus had been classified as a member of the Stemonitales until the mid-1970's, on the basis of its iridescent peridium and noncalcareous capillitial system, similar to Comatricha of the Stemonitaceae. By way of contrast, emphasis on morphological characteristics, most notably the calcareous stalk and typical columella, places Diachea within the order Physarales. The presence of a phaneroplasmodium during the trophic stage and lime deposition in its sporophores, as was confirmed in this work, supported the inclusion of Diachea in the Physarales, and the noncalcareous capillitial system verified its identification as a member of the Didymiaceae. Further characteristics of the species D. leucopodia include the following: phaneroplasmodium, spore globose 7.5 ${\mu}m$ in diameter, very minutely roughened; sporangia $500{\mu}m\times1mm$, more or less cylindrical, gregarious, stalked 1.2mm; stalk and columella white.

A Study on the Creation of Hybrid Bibliographic Records (국내 하이브리드 서지레코드 생성 방안에 관한 연구)

  • Lee, Mihwa
    • Journal of the Korean Society for Library and Information Science
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    • v.49 no.4
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    • pp.203-220
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    • 2015
  • This study was to suggest the creation of hybrid bibliographic records in complicated bibliographic environment applying both AACR2 and RDA for uniform display and correct search. The literature reviews and case studies were used as the research methods. In case studies, Kent State University, University of Houston as the libraries, and Backstage Library Works as algorithm converting to hybrid records were surveyed. For creating the hybrid records, it was needed to differentiate hybrid records and born RDA records, to keep the data that appeared in 250 tag without spelling out edition data, to maintain 260 tag instead of converting 260 tag to 264 tag, and last to design mapping table for converting GMD to CMC. This study would suggest uniform display and search through hybridization of bibliographic records of foreign resources.

Development of a Group-specific Average Brain Atlas: A Comparison Study between Korean and Occidental Groups

  • Kim Hyun-Pil;Lee Jong-Min;Lee Dong Soo;Koo Bang-Bon;Kim Jae-Jin;Kim In Young;Kwon Jun Soo;Yoo Tae Woo;Chang Kee-Hyun;Kim Sun I.
    • Journal of Biomedical Engineering Research
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    • v.26 no.1
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    • pp.9-16
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    • 2005
  • One of the most important roles of a brain atlas is providing a spatial reference system in which multiple images can be interpreted in a consistent way. The brain atlase based on Western populations such as the International Consortium for Brain Mapping's 452 T-1 Weighted Average Atlas was widely used; however, they may not be the optimal choice for use with brain images from other ethnic groups, because structural differences between occidental and oriental brains have been reported. Therefore, in this study, we created an average brain atlas from 100 healthy Koreans (100 cases (M/F=53/47), 39.0±17.0 years). The purpose of this study was to make a Korean average-brain atlas and to measure its differences from a widely accepted average brain atlas built on an occidental population. The average brain atlas for Koreans was developed using widely accepted tools and procedures. The comparison between the Korean and occidental averages was performed using tissue probability maps and a registration tool, and it was shown that the global pattern of differences between the two average brains found in this work agreed with previously reported differences: Korean brains are wider and shorter in size, and smaller in volume, yet no hemispheric volume asymmetry was found.

Sparse reconstruction of guided wavefield from limited measurements using compressed sensing

  • Qiao, Baijie;Mao, Zhu;Sun, Hao;Chen, Songmao;Chen, Xuefeng
    • Smart Structures and Systems
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    • v.25 no.3
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    • pp.369-384
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    • 2020
  • A wavefield sparse reconstruction technique based on compressed sensing is developed in this work to dramatically reduce the number of measurements. Firstly, a severely underdetermined representation of guided wavefield at a snapshot is established in the spatial domain. Secondly, an optimal compressed sensing model of guided wavefield sparse reconstruction is established based on l1-norm penalty, where a suite of discrete cosine functions is selected as the dictionary to promote the sparsity. The regular, random and jittered undersampling schemes are compared and selected as the undersampling matrix of compressed sensing. Thirdly, a gradient projection method is employed to solve the compressed sensing model of wavefield sparse reconstruction from highly incomplete measurements. Finally, experiments with different excitation frequencies are conducted on an aluminum plate to verify the effectiveness of the proposed sparse reconstruction method, where a scanning laser Doppler vibrometer as the true benchmark is used to measure the original wavefield in a given inspection region. Experiments demonstrate that the missing wavefield data can be accurately reconstructed from less than 12% of the original measurements; The reconstruction accuracy of the jittered undersampling scheme is slightly higher than that of the random undersampling scheme in high probability, but the regular undersampling scheme fails to reconstruct the wavefield image; A quantified mapping relationship between the sparsity ratio and the recovery error over a special interval is established with respect to statistical modeling and analysis.

Application of GeoJSON to Geo-spatial Web Service (지공간정보 웹 서비스에서 GeoJSON 적용)

  • Park, Yong-Jae;Lee, Ki-Won
    • Korean Journal of Remote Sensing
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    • v.24 no.6
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    • pp.613-620
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    • 2008
  • Web on Web 2.0 paradigm is regarded as a kind of platform. Accordingly, users on web can use almost same applications like using certain applications on personal computer, to given purposes. For Web as platform, it needs web-based or web-recognizable file format to communicate or to exchange various information contents and data among applied applications. Text-based JSON is a practical format directly linked Javascript on Web, so that XML-typed data, being previously built, can be possible for tagging process containing JSON format. However, GeoJSON handling geo-spatial data sets is now fledgling stage in standards. Thus, it is not on the practical applicability level, and there are a few tools or open sources for this format. To adopt GeoJSON for the future Geo-web application, users implement GeoJSON parser or apply the server-based open source GIS for their purpose. In this study, a preliminary work for GeoJSON application in Geo-web service carried out using Google Maps API and openlayers library API.

Natech Risk Assessment of Chemical Facilities in the Event of Earthquake in Korea using RAPID-N (RAPID-N을 이용한 국내 지진 발생 시 화학시설 Natech 위험성 평가)

  • Park, Jaehyuk;Yeon, Eungjin;Lee, Hak Tae;Jung, Seungho
    • Journal of the Korean Society of Safety
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    • v.34 no.4
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    • pp.111-118
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    • 2019
  • Accidents occurring due to natural disasters in chemical process facilities where technologies are concentrated can cause secondary damage. The concept of the relationship between natural disasters and highly intensive technologies has evolved into the Natech (Natural Hazards Triggered Technological Disaster) research. Currently, the number of earthquakes is increasing all over the Korean peninsula. To assess the risk of Natech when an earthquake has occurred in South Korea, the Rapid Natech Risk Assessment Tool (RAPID-N) developed by the European Commission's Joint Research Center (EC JRC) was used in the present study. The RAPID-N can be used for Natech risk assessment based on mapping and can be utilized for sufficient preparation for reduction of the effects of Natech accidents. A total of 261 chemical facilities actually existing in Pohang were initially analyzed to select eight facilities and the Pohang earthquake that occurred in 2017 was implemented in the RAPID-N utilizing the shake map. High risk areas were selected through Natech risk assessments for the selected eight work places and countermeasures for the areas were suggested. High risk areas exist depending on the location, since the damage influence ranges could be overlapped and each chemical facility has an independent probability of Natech. Therefore, studies on Natech emergency plans and emergency evacuation routes should be actively conducted considering such high risk areas. The present study was conducted to demonstrate the feasibility of Natech risk assessment in South Korea through the RAPID-N. These findings can be used as a reference material to lay a foundation for Natech risk assessment and related policies in South Korea.

Prediction of Rice Embryo Proteins using EST-Databases

  • Woo, Sun-Hee;Cho, Seung-Woo;Kim, Tae-Seon;Chung, Keun-Yook;Cho, Yong-Gu;Kim, Hong-Sig;Song, Beom-Heon;Lee, Chul-Won;Jong, Seung-Keun
    • Korean Journal of Breeding Science
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    • v.40 no.1
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    • pp.1-7
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    • 2008
  • An attempt was made to link rice embryo proteins to DNA sequences and to understand their functions. One hundred of the 700 spots detected on the embryo 2-DE gels were microsequenced. Of these, 28% of the embryo proteins were matched to DNA sequences with known functions, but 72% of the proteins were unknown in functions as previously reported (Woo et al. 2002). In addition, twenty-four protein spots with 100% of homology and nine with over 80% were matched to ESTs (expressed sequence tags) after expanding the amino acid sequences of the protein spots by Database searches using the available rice EST databases at the NCBI (http://www/ncbi.nlm.nih.gov/) and DDBJ (http://www.ddbj.nig.ac.jp/). The chromosomal location of some proteins were also obtained from the rice genetic map provided by Japanese Rice Genome Research Program (http://rgp.dna.affrc.go.jp). The DNA sequence databases including EST have been reported for rice (Oryza sativa L.) now provides whole or partial gene sequence, and recent advances in protein characterization allow the linking proteins to DNA sequences in the functional analysis. This work shows that proteome analysis could be a useful tool strategy to link sequence information and to functional genomics.

Chromosome numbers and polyploidy events in Korean non-commelinids monocots: A contribution to plant systematics

  • JANG, Tae-Soo;WEISS-SCHNEEWEISS, Hanna
    • Korean Journal of Plant Taxonomy
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    • v.48 no.4
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    • pp.260-277
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    • 2018
  • The evolution of chromosome numbers and the karyotype structure is a prominent feature of plant genomes contributing to or at least accompanying plant diversification and eventually leading to speciation. Polyploidy, the multiplication of whole chromosome sets, is widespread and ploidy-level variation is frequent at all taxonomic levels, including species and populations, in angiosperms. Analyses of chromosome numbers and ploidy levels of 252 taxa of Korean non-commelinid monocots indicated that diploids (ca. 44%) and tetraploids (ca. 14%) prevail, with fewer triploids (ca. 6%), pentaploids (ca. 2%), and hexaploids (ca. 4%) being found. The range of genome sizes of the analyzed taxa (0.3-44.5 pg/1C) falls well within that reported in the Plant DNA C-values database (0.061-152.33 pg/1C). Analyses of karyotype features in angiosperm often involve, in addition to chromosome numbers and genome sizes, mapping of selected repetitive DNAs in chromosomes. All of these data when interpreted in a phylogenetic context allow for the addressing of evolutionary questions concerning the large-scale evolution of the genomes as well as the evolution of individual repeat types, especially ribosomal DNAs (5S and 35S rDNAs), and other tandem and dispersed repeats that can be identified in any plant genome at a relatively low cost using next-generation sequencing technologies. The present work investigates chromosome numbers (n or 2n), base chromosome numbers (x), ploidy levels, rDNA loci numbers, and genome size data to gain insight into the incidence, evolution and significance of polyploidy in Korean monocots.

Genomics Approach to Identify the Cause of the Missing Omega-5 Gliadin Protein in O-Free Wheat

  • Lee, Yun Gyeong;Choi, Sang Chul;Kang, Yuna;Kang, Chon-Sik;Kim, Changsoo
    • Plant Breeding and Biotechnology
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    • v.6 no.4
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    • pp.413-425
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    • 2018
  • A previous work developed and identified a new omega-5 gliadin deficient wheat line named O-free by crossing Keumkang and Olgeuru, which is nutritionally quite meaningful in that omega-5 gliadin is one of the known wheat allergens. To verify the characteristics of the O-free, we performed RNA sequencing (RNAseq) analysis of the O-free and the two parent lines (Keumkang and Olgeuru). The results of the similarity analysis with the ESTs for gliadins and glutenins showed that the O-free ESTs had no similarity with the omega-5 gliadin sequences but had similarity to other gliadins and glutenins. Furthermore, mapping results between the raw RNAseq data from the O-free and the omega-5 gliadin sequence showed a clear deletion of the N-terminal sequences which are an important signature of omega-5 gliadin. We also designed specific PCR primers that could identify omega-5 gliadin in the genomic DNA. The results showed that no omega-5 gliadin fragments were detected in the O-free. According to these results, we confirmed that the deficiency of omega-5 gliadin in the O-free is not caused by post-transcriptional or post-translational regulations such as epigenetic phenomena but by a simple deletion in the chromosome. Furthermore, we showed that the low-molecular weight glutenin subunit (LMW-GS) gene in the O-free had a single nucleotide polymorphism (SNP) causing a premature stop codon, resulting in a truncated polypeptide. We expect that the O-free line may serve as an excellent source of wheat that could prevail in the hypo-allergen wheat market, which has recently gained interest world-wide.

A Study for Rule Integration in Vulnerability Assessment and Intrusion Detection using Meaning Based Vulnerability Identification Method (의미기반 취약점 식별자 부여 기법을 사용한 취약점 점검 및 공격 탐지 규칙 통합 방법 연구)

  • Kim, Hyung-Jong;Jung, Tae-In
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.18 no.3
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    • pp.121-129
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    • 2008
  • This paper presents vulnerability identification method based on meaning which is making use of the concept of atomic vulnerability. Also, we are making use of decomposition and specialization processes which were used in DEVS/SES to get identifiers. This vulnerability representation method is useful for managing and removing vulnerability in organized way. It is helpful to make a relation between vulnerability assessing and intrusion detection rules in lower level. The relation enables security manager to response more quickly and conveniently. Especially, this paper shows a mapping between Nessus plugins and Snort rules using meaning based vulnerability identification method and lists usages based on three goals that security officer keeps in mind about vulnerability. The contribution of this work is in suggestion of meaning based vulnerability identification method and showing the cases of its usage for the rule integration of vulnerability assessment and intrusion detection.