• Title/Summary/Keyword: MT domain

Search Result 38, Processing Time 0.044 seconds

Structural Characterization of the J-domain of Tid1, a Mitochondrial Hsp40/DnaJ Protein

  • Sim, Dae-Won;Jo, Ku-Sung;Ryu, Kyoung-Seok;Kim, Eun-Hee;Won, Hyung-Sik
    • Journal of the Korean Magnetic Resonance Society
    • /
    • v.16 no.1
    • /
    • pp.22-33
    • /
    • 2012
  • Tid1, belonging to the Hsp40/DnaJ family of proteins, functions as a cochaperone of cytosolic and mitochondrial Hsp70 proteins. In particular, the N-terminal J-domain of Tid1 (Tid1-JD) constitutes the major binding sites for proteinprotein interactions with client proteins, including p53, as well as its partner chaperone, Hsp70. In the present study, soluble, recombinant protein of Tid1-JD could be obtained by using the pCold vector system, and backbone NMR assignments were completed using the isotope $[^{13}C/^{15}N]$-enriched protein. Far-UV CD result implied that Tid1-JD is an ${\alpha}$-helical protein and the secondary structure determined using chemical shift data sets indentified four ${\alpha}$-helices with a loop region containing the HPD (conserved tripeptide of His, Pro and Asp) motif. Additionally, NMR spectra under different conditions implied that the HPD motif, which is a critical region for protein-protein interactions of Tid1-JD, would possess dynamic properties.

Electromagnetic Survey in Korea (한국의 전자탐사 현황)

  • Cho, Dong-Heng
    • Economic and Environmental Geology
    • /
    • v.39 no.4 s.179
    • /
    • pp.427-440
    • /
    • 2006
  • Electromagnetic(EM) survey has been in use for over a half century as a standard routine for, mineral exploration in many parts of the world. But EM survey work and serious research effort were initiated in Korea only as late as in early 1980s, largely inspired by four pioneers who did their graduate studies in the U.S.A. in 1970s. Nevertheless domestic achievements in the field of EM survey are remarkable in the last two decades: the field operations and related interpretational skills appear to have reached a global standard, even compared with the most advanced in other countries, virtually in a whole spectrum of the method which includes magneto-tellurics(MT), Controlled Source Audio-frequency Magneto-tellurics(CSAMT), geomagnetic sounding, small loop survey systems, Very Low Frequency(VLF), Ground Penetrating Radar(GPR), time domain surveys, and noise analysis. Besides mineral exploration, EM survey has been applied in Korea to hydrogeology, geotechnical engineering, non-destructive investigation of structures, unexplored ordnance(UXO) investigation, environmental monitoring, and archaeological investigation as well. Now that original contributions of several Korean geophysicists are found even in new frontiers such as high-frequency EM survey, investigation in time-domain EM field for buried metal objects and structures, and also modem data inversion scheme, it is duly hoped that they make some technical breakthrough to unravel still entangled knots of EM survey method in a forseeable future.

Direct-Sequence Spread-Spectrum Systems for Interference Signal Control (직접 대역 확산 시스템을 위한 간섭 신호 제어)

  • Cho, Hyun-Seob;Oh, Myoung-Kwan
    • Journal of the Korea Academia-Industrial cooperation Society
    • /
    • v.14 no.4
    • /
    • pp.1976-1981
    • /
    • 2013
  • In this paper, we propose a frequency-domain interference cancellation algorithm for direct-sequence spread spectrum systems. In the previously proposed frequency-domain interference cancellation algorithms that protocol defines the rules concerning the collection of means of Transmission Control Protocol (TCP: Transmission Control Protocol) is the most widely used in the transport layer. Two-way traffic through the network path to the same end-to-end transfer of data in the opposite direction between pairs of nodes are infused with two or more TCP connection using the network traffic patterns from the exchanger and routers share results of approval. Per-flow input/output structure of matter using the LTS online reaction when evaluated as this is the most important factor. TCP-MT when the connection duration is one of the largest performance gains.

Kinetic Characterization of an Iron-sulfur Containing Enzyme, L-serine Dehydratase from Mycobacterium tuberculosis H37Rv (Mycobacterium tuberculosis H37Rv로부터 유래된 철-황 함유 효소인 L-세린 탈수화효소의 동력학적 특성)

  • Han, Yu Jeong;Lee, Ki Seog
    • Journal of Life Science
    • /
    • v.28 no.3
    • /
    • pp.351-356
    • /
    • 2018
  • L-Serine dehydratase (LSD) is an iron-sulfur containing enzyme that catalyzes the conversion of L-serine to pyruvate and ammonia. Among the bacterial amino acid dehydratases, it appears that only the L-serine specific enzymes utilize an iron-sulfur cluster at their catalytic site. Moreover, bacterial LSDs are classified into four types based on structural characteristics and domain arrangement. To date, only the LSD enzymes from a few bacterial strains have been studied, but more detailed investigations are required to understand the catalytic mechanism of various bacterial LSDs. In this study, LSD type II from Mycobacterium tuberculosis (MtLSD) H37Rv was expressed and purified to elucidate the biochemical and catalytic properties using the enzyme kinetic method. The L-serine saturation curve of MtLSD exhibited a typically sigmoid character, indicating an allosteric cooperativity. The values of $K_m$ and $k_{cat}$ were estimated to be $59.35{\pm}1.23mM$ and $18.12{\pm}0.20s^{-1}$, respectively. Moreover, the plot of initial velocity versus D-serine concentration at fixed L-serine concentrations showed a non-linear hyperbola decay shape and exhibited a competitive inhibition for D-serine with an apparent $K_i$ value of $30.46{\pm}5.93mM$ and with no change in the $k_{cat}$ value. These results provide insightful biochemical information regarding the catalytic properties and the substrate specificity of MtLSD.

An Interpretive Analysis of Magnetotelluric Response for a Three-dimensional Body Using FDM (FDM을 이용한 MT 탐사의 3차원 모형 반응 연구)

  • Han Nuree;Lee Seong Kon;Song Yoonho;Suh Jung Hee
    • Geophysics and Geophysical Exploration
    • /
    • v.7 no.2
    • /
    • pp.136-147
    • /
    • 2004
  • In this study, the characteristics of magnetotelluric (MT) responses due to a three-dimensional (3-D) body are analyzed with 3-D numerical modeling. The first model for the analysis consists of a single isolated conductive body embedded in a resistive homogeneous half-space. The second model has an additional conductive overburden while the other conditions remain the same as the first one. The analysis of apparent resistivities shows well that the 3-D effects are dominant over some frequency range for the first model. Two mechanisms, current channeling and induction, for secondary electric fields due to the conductive body are analyzed at various frequencies: at high frequencies induction is more dominant than channeling, while at low frequencies channeling is more dominant than induction. Tippers have a strong relation to the position of anomalous body and the real and imaginary parts of induction vector also indicate the position of anomalous body. off-line conductive anomaly sometimes causes severe problem in 2-D interpretation. In such case, induction vector analysis can give information on the existence and location of the anomalous body. Each parameter of the second model shows similar responses as those of the first model. The only difference is that the magnitude of all parameters is decreased and that the domain showing the 3-D effects becomes narrower. As shown in this study, the analysis of 3-D effects provides a useful and effective means to understand the 3-D subsurface structure and to interpret MT survey data.

Numerical Simulation Experiment on the Wind Ventilation Lane of the Local Circulation Winds in Daegu (대구지역의 국지적 대기순환풍의 환기경로에 관한 수치모의 실험)

  • Gu, Hyeon Suk;Kim, Hae Dong;Gang, Seong Dae
    • Journal of Environmental Science International
    • /
    • v.13 no.4
    • /
    • pp.367-376
    • /
    • 2004
  • In urban area, thermal pollution associated with heat island phenomena is generally regarded to make urban life uncomfortable. To overcome this urban thermal pollution problem, urban planning with consideration of urban climate, represented by the concept of urban ventilation lane, is widely practiced in many countries. In this study, the prevailing wind ventilation lane of a local winds in Daegu during the warm climate season was investigated by using surface wind data and RAMS(Reasonal Atmospheric Model System) simulation. The domain of interest is the vicinity of Daegu metropolitan city(about 900 $km^{2})$ and its horizontal scale is about 30km. The simulations were conducted under the synoptic condition of late spring with the weak gradient wind and mostly clear sky. From the numerical simulations, the following two major conclusions were obtained: (1)The major wind passages of the local circulation wind generated by radiative cooling over the mountains(Mt. Palgong and Mt. Ap) are found. The winds blow down along the valley axis over the eastern part of the Daegu area as a gravity flow during nighttime. (2)After that time, the winds blow toward the western part of Daegu through the city center. As the result, the higher temperature region appears over the western part of Daegu metropolitan area.

Amino Acid Biosynthesis and Gene Regulation in Seed (종자내 아미노산 합성 조절 유전자에 관한 연구)

  • ;;;;;Fumio Takaiwa
    • Proceedings of the Botanical Society of Korea Conference
    • /
    • 1996.07a
    • /
    • pp.61-74
    • /
    • 1996
  • Human and monogastric animals can not synthesize 10 out of the 20 amino asids and therefor need to obtain these from their diet. The plant seed is a major source of dietary protein. It is particular important in their study to increase nutritional quality of the seed storage proteins. The low contents of lysine, asparagine and threonenein various cereal seeds and of cystein and methionine. In legume seeds is due to the low proportions of these amino acids in the major storage proteins, we have tried to apply the three strategies; (1) mutagenesis and selection of specific amino acid analogue resistance, (2) cloning and expression study of lysine biosynthesis related gene, (3) transfomation of lysine rich soybean glycinin gene. The 5-methyltryptophan (5MT) resistant cell lines, SAR1, SAR2 and SAR3 were selected from anther derived callus of rice (Oryza sativa L. "Sasanishiki"). Among these selected cell lines, two (SAR1 and SAR3) were able to grow stably at 200 mg/L of 5MT. Analysis of the freed amino acids in callus shows that 5MT resistant cells (SAR3) accumulated free tryptophan at least up to 50 times higher than those that of the higher than of SAS. These results indicated that the 5MT resistant cell lines are useful in studies of amino acid biosynthesis. Tr75, a rice (Oryza sativa L., var. Sasanishiki) mutant resistant to 5MT was segregated from the progenies of its initial mutant line, TR1. The 5MT resistant of TR75 was inherited in the M8 generations as a single dominant nuclear gene. The content of free amino acids in the TR75 homozygous seeds increased approximately 1.5 to 2.0 fold compared to wild-type seeds. Especially, the contents of tryptophan, phenylalanine and aspartic acid were 5.0, 5.3 and 2.7 times higher than those of wild-type seeds, respectively. The content of lysine is significantly low in rice. The lysine is synthesized by a complex pathway that is predominantly regulated by feedback inhibition of several enzymes including asparginase, aspatate kinase, dihydrodipicolinat synthase, etc. For understanding the regulation mechanism of lysine synthesis in rice, we try to clone the lysine biosynthetic metabolism related gene, DHPS and asparaginase, from rice. We have isolated a rice DHPS genomic clone which contains an ORF of 1044 nucleotides (347 amino acids, Mr. 38, 381 daltons), an intron of 587 nucleotides and 5'and 3'-flanking regions by screening of rice genomic DNA library. Deduced amino acid sequence of mature peptide domain of GDHPS clone is highly conserved in monocot and dicot plants whereas that of transit peptide domain is extremely different depending on plant specie. Southern blot analysis indicated that GDHPS is located two copy gene in rice genome. The transcripts of a rice GDHPS were expressed in leaves and roots but not detected in callus tissues. The transcription level of GDHPS is much higher in leaves indicating enormous chloroplast development than roots. Genomic DNA clones for asparaginase genes were screened from the rice genomic library by using plaque hybridization technique. Twelve different genomic clones were isolated from first and second screening, and 8 of 12 clones were analyzed by restriction patterns and identified by Southern Blotting, Restriction enzyme digestion patterns and Southern blot analysis of 8 clones show the different pattern for asparaginase gene. Genomic Southern blot analysis from rice were done. It is estimated that rice has at least 2-3 copy of asparaginase gene. One of 8 positive clones was subcloned into the pBluescript SK(+) vector, and was constructed the physical map. For transformation of lysine rich storage protein into tobacco, soybean glycinin genes are transformed into tobacco. To examine whether glycinin could be stably accumulated in endosperm tissue, the glycinin cDNA was transcriptionally fused to an endosperm-specific promotor of the rice storage protein glutelin gene and then introduced into tobacco genomic via Agrobacterium-mediated transformation. Consequently the glycinin gene was expressed in a seed-and developmentally-specific manner in transgenic tobacco seeds. Glycinin were targeted to vacuole-derived protein bodies in the endosperm tissue and highly accumulated in the matrix region of many transgenic plant (1-4% of total seed proteins). Synthesized glycinin was processed into mature form, and assembled into a hexamer in a similar manner as the glycinin in soybean seed. Modified glycinin, in which 4 contiguous methionine residues were inserted at the variable regions corresponding to the C - teminal regions of the acidic and basic polypeptides, were also found to be accumulated similarly as in the normal glycinin. There was no apparent difference in the expression level, processing and targeting to protein bodies, or accumulation level between normal and modified glycinin. glycinin.

  • PDF

Multisensor Image Fusion for Enhanced Coastal Wetland Mapping

  • Shanmugam, P.;Ahn, Yu-Hwan;Sanjeevi, S.;Yoo, Hong-Ryong
    • Proceedings of the KSRS Conference
    • /
    • 2003.11a
    • /
    • pp.902-904
    • /
    • 2003
  • The main objective of this paper is to investigate the potential utility of multisensor remotely sensed data for improved coastal wetland mapping. Five data fusion models, three algebraic models (Multiplicative (MT), Brovey (BT) and Wavelet transform (WT)) and two spectral domain models (Principals component transform (PCT) and Intensity-Hue-Saturation (IHS)) were implemented and tested over the multisensor data. The fused images were then compared based on visual and statistical approaches. The results show that the wavelet transform provides greater flexibility for combining optical data sets and has good potential for preserving the spatial and spectral content of the original images . However, this model yields poor information when combining optical and microwave data. Brovey transform is more reliable for fusing optical and microwave image data and yields improved information about different wetland features of the coastal zone.

  • PDF

Algorithm Study for Diagnosis the Breast Cancer Using LMA and FDTD (LMA와 FDTD를 이용한 유방암 진단용 알고리즘 연구)

  • Seo, Min-Gyeong;Kim, Tae-Hong;Mun, Ji-Yeon;Jeon, Soon-Ik;Pack, Jeong-Ki
    • The Journal of Korean Institute of Electromagnetic Engineering and Science
    • /
    • v.22 no.12
    • /
    • pp.1124-1131
    • /
    • 2011
  • In this paper, image reconstruction algorithm for breast cancer detection using MT(Microwave Tomography) was investigated. The breast cancer detection system under development uses 16 transmit/receive antennas. The signal waveform was a sinusoidal wave at 900 MHz. To solve the 2D inverse scattering problem, we used the 2D FDTD (Finite Difference Time Domain) method for forward calculation and LMA(Levenberg-Marquardt Algorithm) for optimization. The result of the image reconstruction using the numerical phantom by MRI(Magnetic Resonance Imaging) obtained from real patient of breast cancer showed that we can detect the position of the tumor accurately.

Degradation Assessment of Forest Trails in Gyeongnam Domain of Mt. Jiri (지리산 숲길 경남권역 구간의 훼손 실태 평가)

  • Park, Jae-Hyeon;Huh, Keun-Young;Lim, Hong-geun
    • Journal of Korean Society of Forest Science
    • /
    • v.100 no.3
    • /
    • pp.476-482
    • /
    • 2011
  • As part of studies on the reduction of forest trails degradation caused by high users density, this study was carried out to investigate soil physical properties of forest trails of Gyeongnam Domain in Mt. Jiri, Southeast Korea. Since the forest were opened for leisure trailing in 2008, the average soil erosion amounts per a square meter on the forest trails were $0.0015m^3$ from Inweol to Gumgeo, $0.0018m^3$ from Dongang to Suchol, and $0.0027m^3$ from Suchol to Chungam for 3 years. But, from Chungam to Agyang, the erosion was almost not occurred because it was recently opened. The soil hardness in 5 cm depth was significantly higher than in 10 cm depth. It indicates that intensive soil compaction by users has mainly affected in 5 cm soil depth until now on. In three forest trails compacted intensively, the porosity of 0-7.5 cm soil layer was down to 1.4-1.5 times compared to that in 2008. In additions, the bulk density was up to 1.6-3.1 times compared to the controls, which were not opened to users. As a result, the degradation caused by high users density would keep occurring on the three forest trails unless any counterplans are considered for the degradation reduction. At the moment, users distribution to other forest trails and long-term sabbatical years would be the most effective counterplans to keep from users gravitation on the three forest trails.