• Title/Summary/Keyword: MT data

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Discrimination of Korean Native Chicken Populations Using SNPs from mtDNA and MHC Polymorphisms

  • Hoque, M.R.;Lee, S.H.;Jung, K.C.;Kang, B.S.;Park, M.N.;Lim, H.K.;Choi, K.D.;Lee, J.H.
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.12
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    • pp.1637-1643
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    • 2011
  • Korean native chickens are a very valuable chicken population in Korea and their prices are higher than that of commercial broilers. In order to discriminate two commercial Korean native chicken populations (CCP1 and CCP2), single nucleotide polymorphisms (SNPs) from mitochondrial (mt) DNA D-loop sequences and LEI0258 marker polymorphisms in the major histocompatibility complex (MHC) region were investigated. A total of 718 birds from nine populations were sampled and 432 mtDNA sequences were obtained. Of these, two commercial Korean native chicken populations (363 birds) were used for investigation of their genetic relationship and breed differentiation. The sequence data classified the chickens into 20 clades, with the largest number of birds represented in clade 1. Analysis of the clade distribution indicated the genetic diversity and relation among the populations. Based on the mtDNA sequence analysis, three selected SNPs from mtDNA polymorphisms were used for the breed identification. The combination of identification probability (Pi) between CCP1 and CCP2 using SNPs from mtDNA and LEI0258 marker polymorphisms was 86.9% and 86.1%, respectively, indicating the utility of these markers for breed identification. The results will be applicable in designing breeding and conservation strategies for the Korean native chicken populations and also used for the development of breed identification markers.

Statistical Comparison of Gravity Wave Characteristics Obtained from Airglow All-Sky Observation at Mt. Bohyun, Korea and Shigaraki, Japan

  • Yang, Tae-Yong;Kwak, Young-Sil;Kim, Yong-Ha
    • Journal of Astronomy and Space Sciences
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    • v.32 no.4
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    • pp.327-333
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    • 2015
  • Previously, all-sky airglow images observed at Shigaraki ($34.9^{\circ}N$, $136.1^{\circ}E$), Japan, during 2004 and 2005 were analyzed in relation to those observed at Mt. Bohyun ($36.2^{\circ}N$, $128.9^{\circ}E$) for a comparison of their gravity wave characteristics (Kim et al. 2010). By applying the same selection criteria of waves and cloud coverages as in the case of Mt. Bohyun all-sky images, we derived apparent wavelengths, periods, phase velocities, and monthly occurrence rates of gravity waves at Shigaraki in this study. The distributions of wavelengths, periods, and speeds derived for Shigaraki were found to be roughly similar to those for Mt. Bohyun. However, the overall occurrence rates of gravity waves at Shigaraki were 36% and 34% for OI 557.7 nm and OH Meinel band airglow layers, respectively, which were significantly higher than those at Mt. Bohyun. The monthly occurrence rates did not show minima near equinox months, unlike those for Mt. Bohyun. Furthermore, the seasonal preferential directions that were clearly apparent for Mt. Bohyun were not seen in the wave propagation trends for Shigaraki. These differences between the two sites imply different origins of the gravity waves near the Korean peninsula and the Japanese islands. The gravity waves over the Japanese islands may originate from sources at various altitudes; therefore, wind filtering may not be effective in causing any seasonal preferential directions in the waves in the airglow layers. Our analysis of the Shigaraki data supports recent theoretical studies, according to which gravity waves can be generated from in situ sources, such as mesosphere wind shear or secondary wave formation, in the mesosphere.

The Basic Study for Developing Plant Ecological Indices of Sacheon-si, Gyeongsangnam-do (경상남도 사천시의 식물생태지수 개발을 위한 기초연구)

  • Oh, Hyun-Kyung;You, Ju-Han
    • Journal of Environmental Impact Assessment
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    • v.21 no.4
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    • pp.509-523
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    • 2012
  • This basic study is to present the methods and raw data for carrying out to objectively assess an ecosystem by developing the plant ecological indices. The results are as follows. The plant ecological indices were 7 units including RI (Rare Index), EI (Endemic Index), SI (Specific Index), NI (Naturalized Index), UI (Urbanized Index), Pte-Q (Pteridophyta Index) and HI (Halophytes Index). The vascular plants in Mt. Waryong, Mt. Bongmyeong and Bito island were summarized as 471 taxa including 104 families, 294 genera, 419 species, 3 subspecies, 41 varieties and 8 forms. We surveyed 5 taxa of rare plants, 7 taxa of endemic plants, 38 taxa of specific plants by floristic region, 40 taxa of naturalized plants, 1 taxa of invasive alien plant, 19 taxa of pteridophyta and 14 taxa of halophytes. Bito island had the highest RI was 1.2%. Mt. Bongmyeong was 1.4% higher than other sites. If the SI of 2.9% was the highest in Bito island. Bito island was the highest NI, and the UI was the hightest in Mt. Waryong. Mt. Bongmyeong was the lowest NI and UI. In Mt. Waryong and Bito island, the highest DI was 9.1%. The Pte-Q of Mt. Waryong was 1.3 higher than the other sites. Bito island, the highest HI was 8.1%. Overall, 1.5% of RI, 1.9% of EI, 2.3% of SI, 8.5% of NI, 14.3% of UI, 9.1% of DI, 1.0 of Pte-Q and 3.0% were analyzed with HI.

Phylogenetic Analysis by RFLP and Sequencing of Mitochondrial DNA in a Korean Population

  • Lee, Jin-Young;Kim, Heui-Soo;Ha, Bae-Jin;Park, Yeong-Hong
    • Archives of Pharmacal Research
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    • v.29 no.1
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    • pp.88-95
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    • 2006
  • Analysis of molecular nature of mitochondrial DNA (mtDNA) could be powerful marker for anthropological studies of modern populations. While population genetic studies on mtDNA have been reported for several ethnic groups, no such study has been documented for the Korean population. We surveyed mtDNA polymorphisms in the HVS I of noncoding D-loop region and its upstream region from 430 unrelated healthy Korean population by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and direct sequencing analysis. PCR product with 2,790 bp spanning the specific mtDNA region (mt13715-16504) was subjected to RFLP analysis using 6 restriction enzyme (Hinf I, Hae III, Alu I, Dde I, Mbo I, Rsa I). On the PAUP analysis of PCR-RFLP results, 38 mtDNA haplotypes (Hap 1-38) were detected in the Korean populations, which were classified into 11 haplogroups (Grp 1-11) of related haplotypes encompassing all 38 haplotypes. In comparison of sequencing data with Anderson's reference sequence, the transition type was more prevalent than the transversion type. Insertions or deletions were not found. In addition, three of the polymorphic sites (A16240C, A16351G, G16384A) in HVS-I region are determined newly. The polymorphic sites were distributed randomly in the region, though the frequency at each site was variable. Thus, this research might be required for the genealogical study of Orientals.

Effects of 3D Topography on Magnetotelluric Responses (MT 탐사의 3차원 지형효과)

  • Nam, Myung-Jin;Kim, Hee-Joon;Song, Yoon-Ho;Lee, Tae-Jong;Suh, Jung-Hee
    • Geophysics and Geophysical Exploration
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    • v.10 no.4
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    • pp.275-284
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    • 2007
  • For precise interpretation of magnetotelluric (MT) data distorted by irregular surface terrain, topography effects are investigated by computing apparent resistivities, phases, tippers and induction vectors for a three-dimensional (3D) hill-and-valley model. To compute MT responses for the 3D surface topography model, we use a 3D MT modeling algorithm based on an edge finite-element method which is free from vector parasites. Distortions on the apparent resistivity and phase are mainly caused by distorted currents that flow along surface topography. The distribution of tipper amplitudes over both hill and valley are the same, while the tipper points toward the center of hill and the base of the valley. The real part of induction vector also points in the same direction as that of tipper, while the imaginary part in the opposite direction.

Quantitative Analysis of the Volcanic Cave Rocks in Mt. Peakdu Group and Cheju Island (백두산과 제주화산도에 있는 용암동굴의 X선 분석)

  • 김경훈
    • Journal of the Speleological Society of Korea
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    • v.45 no.46
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    • pp.9-31
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    • 1996
  • The Mt. Peakdu is situated in north of the main peninsula, commanding geographically coordinated between longitude W($127^{\circ}$ 15' - $128^{\circ}$ 00') to E($128^{\circ}$ 15'- $129^{\circ}$ 00'), between latitude from S($41^{\circ}$ 15'- $42^{\circ}$ 00') to N($42^{\circ}$ 10'- $42^{\circ}$ 40'). The Manjyang-Gul in Cheju volcanic island is situated in the south of the main peninsula, commanding the Korean Strait, geographically coordinated longitude N($33^{\circ}$ 32' 26") and E($126^{\circ}$ 46' 48"). The quantitative analysis using XRF of volcanic rock samples for the north of Lu- Ming- Feng in Mt. Peakdu Group and the Manjang-Gul in Cheju island was Performed. The major chemical components by group analysis are as follows; Peakdu-Mt. Cheju Peakdu-Mt. Cheju (1) $Na_2O$(3.29Wt% and 3.27Wt%) (2) MgO (3.95Wt% and 6.l5Wt%) (3) $Al_2O_3$((17.64Wt% and 15.l7Wt%) (4) $SiO_2$((50.62Wt% and 50.99Wt%) (5) $P_2O_5$ (0.36Wt% and 0.30Wt%) (6) $K_2O$ (1.37Wt% and 1.04Wt%) (7) CaO (8.56Wt% and 8.06Wt%) (8) $TiO_2$ (2.37Wt% and 2.l5Wt%) (9) MnO (0.llWt% and 0.l6Wt%) (10) $Fe_2O_3$(9.l2Wt% and 12.56Wt%) The Group analysis data were compared in the relation within the age of formation for $0.16{\pm}0.08Ma$ in Mt. Peakdu Group, and $0.42{\pm}42Ma$ or $0.42{\pm}42Ma$ in Cheju island for K-Ar age. The crystal structure are mixed crystal of monoclinic, hexagonal and triclinic system in Mt. Peakdu Group and mixed structure of triclinic and cubic system in Cheju volcanic island.ic island.

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Statistical Characteristics of Local Circulation Winds Observed using Climate Data in the Complex Terrain of Chilgok, Gyeongbuk

  • Ha-Young Kim;Soo-Jin Park;Hae-Dong Kim
    • Journal of Environmental Science International
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    • v.32 no.5
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    • pp.375-384
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    • 2023
  • Climate data were obtained over an eight-year period (July 2013 to June 2021) using an automatic weather observation system (AWS) installed at the foot of Mt. Geumo in Chilgok, Gyeongbuk. Using climate data, the statistical and meteorological characteristics of the local circulation between the Nakdong River and Mt. Geumo were analyzed. This study is based on automatic weather observation system data for Dongyeong, along with comparative climate data from the Korea Meteorological Administration (Chilgok) and the Gumi meteorological observatory. Over the eight- years, mountain and valley winds have occurred 48 times a year on average, with the highest occurring in May and the weakest winds in June and December. When mountain winds occurred, the temperature in the nearby lowland region more strongly decreased than when valley winds blew. However, the potential to use mountain winds to improve urban thermal environments is limited because mountain winds occur infrequently in summer when a drop in nighttime temperature is required.

The Role of Medical Technologists in Next-Generation Sequencing and Clinical Genetic Tests (임상유전자검사 및 차세대 염기서열분석을 위한 임상병리사의 역할)

  • Hyun-Seok JIN;Sangjung PARK;Mi-Sook AHN;Sangwook PARK
    • Korean Journal of Clinical Laboratory Science
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    • v.55 no.3
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    • pp.203-212
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    • 2023
  • Since the coronavirus disease-2019 (COVID-19) outbreak, it has been generally believed that a medical technologists (MTs) are supposed to perform polymerase chain reaction tests and next-generation sequencing (NGS) in the hospitals. However, many do not recognize that the duty of MT for clinical genetic testing has not been stated in the Medical Laws (72.5% for MT, N=200; 62.8% for students, N=123). In this regard, to evaluate the feasibility of MT's role for NGS genetic testing, we requested our subjects to fill out an online survey and analyzed the data. Among them, it shows that the scope of MT's role, including NGS performance should include clinical genetic testing (99.5% for MT, N=200; 86.8% for students, N=123). Also, questions on clinical genetics, which is associated with both cellular genetics and molecular genetic questions should be included in the National MT License Problem Bank (97.5% for MT; 71.4% for students). Based on these results, the Korean Association of Medical Technologists needs to cooperate synergically with the Academic Association of Biomedical Laboratory Science with respect to genetic education and legislation for the future benefit of both MTs and students.

Unsupervised Classification of Forest Vegetation in the Mt. Wolak Experimental Forest Using Landsat Thematic Mapper Data (Landsat Thematic Mapper 화상자료를 이용한 월악산 지역 산림식생의 무감독분류)

  • Lee, Sang Hee;Park, Jae Hyeon;Lee, Joon Woo;Kim, Je Su
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.4 no.2
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    • pp.36-44
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    • 2001
  • The main purpose of this study was to classify forest vegetation effectively using Landsat Thematic Mapper data(June, 1994) in mountainous region. The research area was the Mt. Wolak Experimental Forest of Chungbuk National University, near Chungju and Jecheon city, Chungcheongbuk-do. To classify forest vegetation effectively, Normalized Difference Vegetation Index(NDVI) was used to reduce topographic effects. This NDVI was modified and transformed to the value of 0 to 255, and then the modified values were combined with other Landsat Thematic Mapper bands. To classify forest and land cover types, unsupervised classification method was used. The results of this study are summarized as follows. 1. Combinations of band "3, 5, NDVI" in Landsat Thematic Mapper data showed a good separation with high accuracy. The expected classification accuracy was 95.1% in Landsat Thematic Mapper data. 2. The Land Cover types were classified into six groups : coniferous forest, deciduous forest, mixed forest, paddy and grass, non-forest, and other undetectable areas. As these classified results were compared with the reconnaissance survey and aerial black and white infrared photographs, the overall classification accuracy was 76.5% in Landsat Thematic Mapper data. 3. The portion of non-forest in Mt. Wolak area was 1.9%. The percentages of coniferous, deciduous and mixed forests were 30.9%, 35.7% and 26.4%, respectively. 4. As these classified results were compared with other reference data, the percentages of coniferous, deciduous and mixed forests increased, but the portion of non-forest was exceedingly diminished. These differences are thought to be from the different research method and the different season of received Landsat Thematic Mapper data.

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Basin analysis using high-resolution magnetotelluric data (고해상 자기지전류 자료를 이용한 분지해석)

  • Ryang Woo Hun
    • The Korean Journal of Petroleum Geology
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    • v.7 no.1_2 s.8
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    • pp.7-12
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    • 1999
  • A new high-resolution rnagnetotelluric (MT) survey was conducted for pull-apart basin analysis (Cretaceous Eumsung Basin), combined with surface sedimentological results. Two cross-basinal MT profiles represent an asymmetric form with a subbasin in the southeastern part. These basinal architectures are well compatible with paleoflow directions and facies transitions of surface sedimentology. The results also suggest that the basin fills reflect pull-apart opening with rapid subsidence of the central blocks. Combined with the surface sedimentological data on asymmetric lithofacies distribution, facies transitions, and paleoflow directions of the alluvio-lacustrine systems, the MT data help explain basin-fill processes during the basin formation. For petroleum exploration and basin analysis, the high-frequency MT technique can be a useful substitute for the costly burden of a seismic-reflection survey on land.

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