• 제목/요약/키워드: Ligand affinity

검색결과 129건 처리시간 0.029초

Sphingosine 1-phosphate mediated suppression of leptin secretion in rat adipocytes.

  • Jun, Dong-Jae;Kim, Kyong-Tai
    • 한국생물물리학회:학술대회논문집
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    • 한국생물물리학회 2001년도 학술 발표회 진행표 및 논문초록
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    • pp.49-49
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    • 2001
  • Sphingosine 1-phosphate is a metabolite of complex sphingolipids that acts as both a second messenger and as a high-affinity ligand for cell surface receptor. Since the possible involvement of sphingosine 1-phosphate has not been investigated in adipocyte, we examined the response of intracellular calcium ([Ca$^{2+}$]$_{i}$) and intracellular cAMP ([cAMP]$_{i}$ and the effect of sphingosine 1-phosphate on adipocyte function using rat primary adipocyte.(omitted)ted)

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Human Renal Dipeptidase from Kidneys of Renal Stome Patients: Partial Purification

  • Park, Haeng-Soon;Kim, Doh-Ha;Hyun-S.Ellen-Kwark;Park, Sung-Kwang;Kang, Sung-Kyew;Chung, Byung-Ho;Yoo, Gyrung-Soo
    • Archives of Pharmacal Research
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    • 제16권4호
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    • pp.295-299
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    • 1993
  • Human renal dipeptidase (RDPase) was purified from surgically removed kdneys of renal stone aptients by affinity chromatography using its specific inhibitor, cilastain, as the ligand. The partial purified RDPase of 6 mg exhivited specific activity of 99.4 unit/mg with 2, 029 fold purification. it was composed of a slow moving major band (96%) and a fast moving minor band (4%). The minor band was not a contaminant as it showed a dipeptidase-specific activity. The kinetic parameters determined with glycyldehydrophenylalanine (Gdp) as synthetic substrate were Vmax, $322.6\;\mu{mol/min/mg}$ and km, 0.120 mM. This experiment provided biochemical evidences that sugically removed, nonfunctional kidneys in respect of glomerular filtration still retained high activity of renal dipeptidase.

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A novel tricyclic derivative for PET imaging of the translocator protein

  • Kwon, Young-Do;Kim, Hee-Kwon
    • 대한방사성의약품학회지
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    • 제2권1호
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    • pp.37-42
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    • 2016
  • The translocator protein (TSPO) has attracted scientist's attention for Positron Emission Tomography (PET) imaging due to correlation with brain cancer, stroke, and neurodegeneration. Recently, GE-180, a novel tricyclic derivative has been developed as a new high affinity agent for the TSPO and evaluated to confirm a possibility for the TSPO ligand. In this highlight review, several studies for the novel TSPO radiotracer are described.

Enhanced Performance of Immunoassays with Affinity-Purified Analyte-Enzyme Conjugates as Signal Generators

  • 백세환
    • Bulletin of the Korean Chemical Society
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    • 제18권5호
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    • pp.515-519
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    • 1997
  • In a competitive enzyme immunoassay, the performance was tested with different analyte-enzyme conjugates (signal generators) in their binding constants to antibody. Analyte (progesterone)-enzyme (glucose oxidase; GO) conjugates were chemically synthesized and purified by using a gel column with an immobilized antibody to progesterone. In an elution range from the column, four peaks were detected by measuring total enzyme activities. Results from further analysis indicated that the first peak contained mainly unreacted GO while the next three peaks conjugated GO with progesterone. These three conjugate preparations were compared in dose-response curves along with the unpurified mixture. The purified conjugates showed higher detection capabilities than did the mixture. Especially, the preparation in the second peak next to the free GO peak improved the detection limit five times. This performance was comparable to that of a progesterone-horseradish peroxidase conjugate that has been identified to have one progesterone ligand.

¹H NMR Study of Pyridine-Type Ligands Coordinated to the Paramagnetic $[Ni_3(PW_9O_{34})_2]^{12-}$ Anion

  • 우한영;김지영;소현수
    • Bulletin of the Korean Chemical Society
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    • 제16권12호
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    • pp.1176-1179
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    • 1995
  • 1H NMR spectra of pyridine, α-, β-, and γ-picoline coordinated to the paramagnetic heteropolyanion [Ni3(PW9O34)2]12- (P2Ni3) are reported. NMR lines are assigned to [Ni3(ptl)n(PW9O34)2]12- (n=1, 2 or 3; ptl=pyridine-type ligand) on the basis of their [P2Ni3]/[ptl] dependence. The formation constants for γ-picoline complexes at 25 ℃ are K1=80, K2=610, and K3=190 L mol-1. The monopicoline complex has greater affinity for γ-picoline than P2Ni3. A degradation product, [Ni2(WO2)(PW9O34)2]12-, was also identified at low pH by measuring the NMR spectrum of pyridine coordinated to it. The isotropic NMR shifts come mainly from the contact interaction due to σ-electron delocalization.

Computational evaluation of interactions between olfactory receptor OR2W1 and its ligands

  • Oh, S. June
    • Genomics & Informatics
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    • 제19권1호
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    • pp.9.1-9.5
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    • 2021
  • Mammalian olfactory receptors are a family of G protein-coupled receptors (GPCRs) that occupy a large part of the genome. In human genes, olfactory receptors account for more than 40% of all GPCRs. Several types of GPCR structures have been identified, but there is no single olfactory receptor whose structure has been determined experimentally to date. The aim of this study was to model the interactions between an olfactory receptor and its ligands at the molecular level to provide hints on the binding modes between the OR2W1 olfactory receptor and its agonists and inverse agonists. The results demonstrated the modes of ligand binding in a three-dimensional model of OR2W1 and showed a statistically significant difference in binding affinity to the olfactory receptor between agonists and inverse agonists.

Docking Study of the Cystein Protease Cathepsin K Inhibitors : A Target for the Treatment of Osteoporosis

  • Park, Heung-Jin;Park, Hyung-Yeon;Kim, Chan-Kyung;Lee, Bon-Su
    • 대한약학회:학술대회논문집
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    • 대한약학회 2003년도 Proceedings of the Convention of the Pharmaceutical Society of Korea Vol.2-2
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    • pp.180.2-180.2
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    • 2003
  • Cathepsin K, a cysteine protease of the papain superfamily, is predominantly expressed in osteoclasts and has been postulated as a target for the treatment of osteoporosis. Crystallographic and structure-activity studies on a series of azepanone-based diamino and acyclic ketone derivative inhibitors of cathepsin K have led to the design and identification. X-ray structure of the cysteine protease cathepsin K (1NL6) co-crystalized with an inhibitor with 2.8${\AA}$ resolution was used to predict the protein-ligand interactions and to estimate the binding affinity from the docking score by FlexX module. (omitted)

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Bombesin-based Radiopharmaceuticals for Imaging and Therapy of Cancers Expressing Gastrin-releasing Peptide Receptor

  • Hwi-Soo Lim;Choong Mo Kang
    • 대한방사성의약품학회지
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    • 제8권2호
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    • pp.129-137
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    • 2022
  • Bombesin has a high binding affinity to gastrin-releasing peptide receptor (GRPR) and can be used as a targeting ligand in GRPR-related cancers. Because GRPR is overexpressed in prostate cancer, bombesin analogues have been investigated extensively for diagnosis and treatment of prostate cancer. In nuclear medicine, bombesin derivatives labeled with radiometals such as 55/57Co, 64Cu, 68Ga, 99mTc, and 177Lu or radiohalogen such as 131I and 211At were developed as markers for early detection of tumors and theragnostic tool for cancer treatment. This review focuses on the introduction of bombesin-based radiopharmaceuticals that are studied in pre-clinical or clinical research.

In Silico 분자결합 분석방법을 활용한 MOP와 베타아사론의 열대집모기 후각단백질 활성 부위에 대한 결합 친화도 비교 분석 (In Silico Analysis and Molecular Docking Comparison of Mosquito Oviposition Pheromone and Beta-asarone on the Mosquito Odorant Binding Protein-1)

  • 김동찬
    • 생명과학회지
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    • 제28권2호
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    • pp.195-200
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    • 2018
  • 베타아사론은 널리 알려진 석창포의 주요 효능 성분이다. 본 연구에서는 모기의 oviposition 페로몬 성분인 MOP와 석창포 효능성분 베타아사론의 열대집모기 후각 단백질 CquiOBP1 활성 부위에 대한 친화도 분석 실험을 컴퓨터 분자결합 분석 방법을 통해 비교하였다. CquiOBP1 후각 단백질의 3차원 구조 정보는 PDB database (PDB ID: 3OGN)를 활용하였다. In silico 결합 분석을 수행하기 위해 PyRx, Autodock Vina, Discovery Studio Version 4.5, and NX-QuickPharm 프로그램을 각 분석 조건에 따라 활용하였다. CquiOBP1 후각단백질 활성 부위에 대한 베타아사론의 결합친화도는 -6.40 kcal/mol으로 나왔으며 이는 -6.00 kcal/mol으로 나온 MOP의 결합친화도 보다 훨씬 더 높고 효율적인 것으로 분석되었다. 리간드와 상호작용 하는 CquiOBP1단백질 활성 부위의 아미노산들 가운데 TRP114가 공히 MOP와 베타아사론과 결합 하였다. CquiOBP1 단백질 활성부위의 아미노산들을 전혀 다른 전기적 성질을 지닌 아미노산으로 치환 시킨 후 분자결합 분석을 해 본 결과 리간드들의 X,Y,Z Grid 값에 현격한 변화가 유도되었으며 결합 친화도 또한 감소되었다. 이러한 결과를 통하여 베타아사론은 CquiOBP1 단백질 활성을 조절하는 리간드로서 효과적으로 작용할 것으로 보인다. 결론적으로 석창포 추출물 또는 베타아사론은 곤충기피제 신물질 연구 개발 분야에 효율적으로 활용할 수 있을 것으로 사료된다.

울금의 주요 성분인 커큐민과 나노 마이셀링 기법 적용 염화 커큐민의 트랜스타이레틴 활성 부위에 대한 결합 친화도 비교분석 (Molecular Docking Affinity Comparison of Curcumin and Nano-micelled Curcumin with Natural Sea Salt on Transthyretin)

  • 김동찬;송표
    • 생명과학회지
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    • 제26권2호
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    • pp.253-258
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    • 2016
  • 본 연구에서는 울금의 주요 성분인 커큐민과 나노 마이셀링 기법을 적용한 신규 조성물인 염화 커큐민(NMC)의 트랜스타이레틴(TTR) 단백질 활성 부위에 대한 in silico 분자 결합 친화도를 비교 분석하였다. 우선 NMC신규 조성물의 결정학적 구조를 광학 및 전자현미경을 활용하여 관찰하였을 때, 나노 마이셀링 적용 NMC 결정은 일반 천일염에 비하여 색상 및 질감이 전체적으로 균일화 되었고, 천일염과 NMC성분이 강하게 일체화되어 기간이 상당히 경과 되더라도 쉽게 분리가 되지 않는 고기능성 안전성 구조물이 형성되었다. TTR단백질의 3차원 구조 활성 부위에 대한 in silico 분자 결합 친화도는 NMC가 일반 커큐민에 비하여 상대적으로 높은 결합 친화도를 나타나었고, pharmacophore 모델링 분석에서도 NMC가 일반 커큐민에 비하여 TTR 활성 부위에서 현저하게 pharmacophore 각도의 차이가 나타났었으며 패턴 또한 밀집된 특징을 나타내었다. 결론적으로, 나노 마이셀링 적용 NMC가 일반 커큐민에 비하여 상대적으로 우수하게 TTR 단백질의 활성 부위에 결합하는 것을 확인하였고, 이는 TTR 활성에 의해 유도되는 질병 조절 물질로의 적용 가능성이 있다고 판단된다. 결론적으로 일반 커큐민과 같은 생리 활성 효능 성분에 나노 마이셀링 기법을 적용하므로서 효율적인 결합 타깃 단백질 활발 조절 및 이러한 성분을 활용한 기능성 식품 산업에 나노 마이셀링 기법을 효율적으로 적용할 수 있음을 확인하였다.