• Title/Summary/Keyword: Lichen

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An Easy, Rapid, and Cost-Effective Method for DNA Extraction from Various Lichen Taxa and Specimens Suitable for Analysis of Fungal and Algal Strains

  • Park, Sook-Young;Jang, Seol-Hwa;Oh, Soon-Ok;Kim, Jung A;Hur, Jae-Seoun
    • Mycobiology
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    • v.42 no.4
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    • pp.311-316
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    • 2014
  • Lichen studies, including biodiversity, phylogenetic relationships, and conservation concerns require definitive species identification, however many lichens can be challenging to identify at the species level. Molecular techniques have shown efficacy in discriminating among lichen taxa, however, obtaining genomic DNA from herbarium and fresh lichen thalli by conventional methods has been difficult, because lichens contain high proteins, polysaccharides, and other complex compounds in their cell walls. Here we report a rapid, easy, and inexpensive protocol for extracting PCR-quality DNA from various lichen species. This method involves the following two steps: first, cell breakage using a beadbeater; and second, extraction, isolation, and precipitation of genomic DNA. The procedure requires approximately 10 mg of lichen thalli and can be completed within 20 min. The obtained DNAs were of sufficient quality and quantity to amplify the internal transcribed spacer region from the fungal and algal lichen components, as well as to sequence the amplified products. In addition, 26 different lichen taxa were tested, resulting in successful PCR products. The results of this study validated the experimental protocols, and clearly demonstrated the efficacy and value of our KCl extraction method applied in the fungal and algal samples.

Plant Hormones Promote Growth in Lichen-Forming Fungi

  • Wang, Xin Yu;Wei, Xin Li;Luo, Heng;Kim, Jung-A;Jeon, Hae-Sook;Koh, Young-Jin;Hur, Jae-Seoun
    • Mycobiology
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    • v.38 no.3
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    • pp.176-179
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    • 2010
  • The effect of plant hormones on the growth of lichen-forming fungi (LFF) was evaluated. The use of 2,3,5-triiodobenzoic acid and indole-3-butyric acid resulted in a 99% and 57% increase in dry weight of the lichen-forming fungus Nephromopsis ornata. The results suggest that some plant hormones can be used as inducers or stimulators of LFF growth for large-scale culture.

New Records and an Annotated Key for the Identification of Graphis Adans. in South Korea

  • Joshi, Santosh;Jayalal, Udeni;Oh, Soon-Ok;Park, Jung Shin;Hur, Jae-Seoun
    • Mycobiology
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    • v.41 no.2
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    • pp.73-76
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    • 2013
  • The following new species for the lichen genus Graphis in Korea are reported: G. chlorotica, G. nanodes and G. tenuirima. A brief description of these species, together with their distribution, ecology, and illustrations are provided. A key to all known species of this genus from Korea is also presented.

Notes on the Lichen Genus Leptogium (Collemataceae, Ascomycota) in South Korea

  • Jayalal, Udeni;Jang, Seol Hwa;Yu, Nan Hee;Oh, Soon Ok;Hur, Jae-Seoun
    • Mycobiology
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    • v.42 no.2
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    • pp.120-131
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    • 2014
  • Leptogium (Ach.) Gray is distributed throughout South Korea; however, for nearly two decades no detailed taxonomic or revisionary research on this lichen genus has been conducted. This study examined the specimens deposited in the lichen herbarium at the Korean Lichen Research Institute, and samples were identified using descriptions recently published in the scientific literature. In this revisionary study, a total of fourteen species of Leptogium were documented, including new records of Leptogium delavayi Hue, Leptogium denticulatum Nyl., and Leptogium trichophoroides P. M. J${\o}$rg. & A. K. Wallace. Detailed descriptions of each species are given, including their morphological, anatomical, and chemical characteristics. A key to all Leptogium species known to occur in South Korea is also presented.

Notes on Species of the Lichen Genus Canoparmelia Elix & Hale in South Korea

  • Jayalal, Udeni;Joshi, Santosh;Oh, Soon-Ok;Park, Jung-Shin;Hur, Jae-Seoun
    • Mycobiology
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    • v.40 no.3
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    • pp.159-163
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    • 2012
  • Detailed descriptions of five species of the lichen genus Canoparmelia Elix & Hale. are presented. Until now, three species of the genus Canoparmelia, including C. apata (Krempelh.) Elix & Hale, C. owariensis (Asah.) Elix, and C. texana (Tuck.) Elix & Hale have been reported in South Korea. Canoparmelia carneopruinata (Zahlbr.) Elix & Hale, C. crozalsiana (de Lesd.) Elix & Hale, and C. ecaperata (M$\ddot{u}$ll. Arg.) Elix & Hale are new to the South Korean lichen flora. An artificial key is provided for all species of Canoparmelia, including the three new records.

Lichen Mycota in South Korea: The Genus Usnea

  • Jayalal, Udeni;Joshi, Santosh;Oh, Soon-Ok;Koh, Young Jin;Crisan, Florin;Hur, Jae-Seoun
    • Mycobiology
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    • v.41 no.3
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    • pp.126-130
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    • 2013
  • Usnea Adans. is a somewhat rare lichen in South Korea, and, in nearly two decades, no detailed taxonomic or revisionary study has been conducted. This study was based on the specimens deposited in the lichen herbarium at the Korean Lichen Research Institute, and the samples were identified using information obtained from recent literature. In this study, a total of eight species of Usnea, including one new record, Usnea hakonensis Asahina, are documented. Detailed descriptions of each species with their morphological, anatomical, and chemical characteristics are provided. A key to all known Usnea species in South Korea is also presented.

Notes on the Lichen Genus Hypotrachyna (Parmeliaceae) from South Korea

  • Jayalal, Udeni;Joshi, Santosh;Oh, Soon-Ok;Park, Jung-Shin;Koh, Young Jin;Hur, Jae-Seoun
    • Mycobiology
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    • v.41 no.1
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    • pp.13-17
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    • 2013
  • Hypotrachyna (Vainio) Hale is a somewhat rare lichen genus found on the Korean Peninsula. Since it was first recorded more than two decades ago, no detailed taxonomic or revisionary study of the genus has been conducted. Thus, the present study was conducted to carry out a detailed taxonomic and revisionary study of Hypotrachyna in South Korea. This study was based on specimens deposited in the Korean Lichen Research Institute (KoLRI). Detailed taxonomic studies and a literature review confirmed the presence of seven species of Hypotrachyna from South Korea, including one new record, Hypotrachyna nodakensis (Asahina) Hale. Descriptions of each species with their morphological, anatomical and chemical characters together with a key to all known Hypotrachyna species are presented.

The Lichen Genus Sticta in South Korea

  • Jayalal, Udeni;Joshi, Santosh;Oh, Soon-Ok;Kim, Jung A;Koh, Young Jin;Crisan, Florin;Hur, Jae-Seoun
    • Mycobiology
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    • v.42 no.1
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    • pp.6-11
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    • 2014
  • Sticta (Schreber.) Ach. is one of the common lichen genera in tropical and subtropical regions, but not in the Korean Peninsula. For almost two decades, no detailed taxonomic or revisionary study has been done on this genus. This study was based on the specimens deposited in the lichen herbarium at the Korean Lichen Research Institute, and the samples were identified on the basis of recent literature. In this revisionary study, a total of eight species of Sticta, including a newly recorded one are documented. These species include Sticta fuliginosa (Dicks.) Ach., Sticta gracilis (M$\ddot{u}$ll. Arg.) Zahlbr., Sticta limbata (Sm.) Ach., Sticta nylanderiana Zahlbr., Sticta sublimbata (J. Steiner) Swinscow & Krog, Sticta weigelii (Ach.) Vain., Sticta wrightii Tuck., and Sticta yatabeana M$\ddot{u}$ll. Arg. Detailed descriptions of S. nylanderiana, S. sublimbata, S. weigelii, and S. yatabeana with their morphological, anatomical, and chemical characteristics are provided. A key description of all known Sticta species of the Korean Peninsula is also presented.

Evaluation of Antimicrobial Properties of Lichen Substances against Plant Pathogens

  • Paguirigan, Jaycee A.;Liu, Rundong;Im, Seong Mi;Hur, Jae-Seoun;Kim, Wonyong
    • The Plant Pathology Journal
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    • v.38 no.1
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    • pp.25-32
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    • 2022
  • Plant pathogens pose major threats on agriculture and horticulture, causing significant economic loss worldwide. Due to the continuous and excessive use of synthetic pesticides, emergence of pesticide resistant pathogens has become more frequent. Thus, there is a growing needs for environmentally-friendly and selective antimicrobial agents with a novel mode of action, which may be used in combination with conventional pesticides to delay development of pesticide resistance. In this study, we evaluated the potentials of lichen substances as novel biopesticides against eight bacterial and twelve fungal plant pathogens that have historically caused significant phytopathological problems in South Korea. Eight lichen substances of diverse chemical origins were extracted from axenic culture or dried specimen, and further purified for comparative analysis of their antimicrobial properties. Usnic acid and vulpinic acid exhibited strong antibacterial activities against Clavibacter michiganensis subsp. michiganensis. In addition, usnic acid and vulpinic acid were highly effective in the growth inhibition of fungal pathogens, such as Diaporthe eres, D. actinidiae, and Sclerotinia sclerotiorum. Intriguingly, the growth of Rhizoctonia solani was specifically inhibited by lecanoric acid, indicating that lichen substances exhibit some degrees of selectivity to plant pathogens. These results suggested that lichen substance can be used as a selective biopesticide for controlling plant disease of agricultural and horticultural significance, minimizing possible emergence of pesticide resistant pathogens in fields.

Identification of Sculptolumina japonica (Physciaceae) in South Korea

  • Joshi, Yogesh;Lokos, Laszlo;Wang, Xin Yu;Nguyen, Thi Thuy;Koh, Young-Jin;Hur, Jae-Seoun
    • Mycobiology
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    • v.38 no.1
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    • pp.62-64
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    • 2010
  • The paper describes identification of new microlichen (Sculptolumina japonica) in South Korea. A detailed taxonomic description and comments are presented for the taxa studied. Lichen genus Sculptolumina is reported for the first time for this country.