• Title/Summary/Keyword: L-diversity

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Comparative Analysis of Bacterial Diversity in the Intestinal Tract of Earthworm (Eisenia fetida) using DGGE and Pyrosequencing (DGGE 방법과 Pyrosequencing 방법을 이용한 지렁이 장내미생물의 다양성 분석)

  • Kim, Eun-Sung;Hong, Sung-Wook;Chung, Kun-Sub
    • Microbiology and Biotechnology Letters
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    • v.39 no.4
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    • pp.374-381
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    • 2011
  • The beneficial effects of Eisenia fetida on soil properties have been attributed to their interaction with soil microorganisms. The bacterial diversity of the intestinal tract of E. fetida was investigated by culture-dependent and culture-independent methods including denaturing gradient gel electrophoresis (DGGE) and pyrosequencing analyses. In a pure culture, Lysinibacillus fusiformis (51%), Bacillus cereus (30%), Enterobacter aerogenes (21%), and L. sphaericus (15%) were identified as the dominant microorganisms. In the DGGE analyses, B. cereus (15.1%), Enterobacter sp. (13.6%), an uncultured bacterium (13.1%), and B. stearothermophilus (7.8%) were identified as the dominant microorganisms. In the pyrosequencing analyses, Microbacterium soli (26%), B. cereus (10%), M. esteraromaticum (6%), and Frigoribacterium sp. (6%) were identified as the dominant microorganisms. The other strains identified were Aeromonas sp., Pseudomonas sp., Borrelia sp., Cellulosimicrobium sp., Klebsiella sp., and Leifsonia sp. The results illustrate that culture independent methods are better able to detect unculturable microorganisms and a wider range of species, as opposed to isolation by culture dependent methods.

Spatial Species Diversity of Macrobenthos in the Intertidal Zone of Hwasoon, Jeju Islands (화순 조간대 저서 대형무척추동물의 공간적 종다양성에 관한 연구)

  • 이정재;강경철;김종철
    • The Korean Journal of Malacology
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    • v.17 no.1
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    • pp.63-70
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    • 2001
  • The distribution and seasonal changes of the intertidal macrobenthos community was performed on five intertidal rocky stations of Hwasoon at Jeju Islands September 1999 to August 2000. The macrobenthos was composed of six phyla, 13 classes, 24 orders, 49 families, and 97 species. The dominant species of the upper zones were Nodilittorina exigua, Notoacmea schrenckii, Liolophura japonica and Patelloida saccharina. Those of the middle zones were Monodonta labio, Chthamalus challengeri, Siphonalia japonica and Liolophura japonica. Those of the lower zones were Siphonalia sirius, Patelloida saccharina, Chthamalus challengeri, and Liolophura japonica. The community dominance indices of the upper zones were much higher than those of the middle and lower zones. Species diversity and evenness in all investigated zones were highest in station 1 and lowest in staton 3. But, species richness was highest in station 1 and lowest in station 4.

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Dietary lysophospholipids supplementation inhibited the activity of lipolytic bacteria in forage with high oil diet: an in vitro study

  • Kim, Hanbeen;Kim, Byeongwoo;Cho, Seongkeun;Kwon, Inhyuk;Seo, Jakyeom
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.10
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    • pp.1590-1598
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    • 2020
  • Objective: The objective of this study was to evaluate the effects of lysophospholipids (LPL) supplementation on rumen fermentation, degradability, and microbial diversity in forage with high oil diet in an in vitro system. Methods: Four experimental treatments were used: i) annual ryegrass (CON), ii) 93% annual ryegrass +7% corn oil on a dry matter (DM) basis (OiL), iii) OiL with a low level (0.08% of dietary DM) of LPL (LLPL), and iv) OiL with a high level (0.16% of dietary DM) of LPL (HLPL). An in vitro fermentation experiment was performed using strained rumen fluid for 48 h incubations. In vitro DM degradability (IVDMD), in vitro neutral detergent fiber degradability, pH, ammonia nitrogen (NH3-N), volatile fatty acid (VFA), and microbial diversity were estimated. Results: There was no significant change in IVDMD, pH, NH3-N, and total VFA production among treatments. The LPL supplementation significantly increased the proportion of butyrate and valerate (Linear effect [Lin], p = 0.004 and <0.001, respectively). The LPL supplementation tended to increase the total bacteria in a linear manner (p = 0.089). There were significant decreases in the relative proportions of cellulolytic (Fibrobacter succinogenes and Ruminococcus albus) and lipolytic (Anaerovibrio lipolytica and Butyrivibrio proteoclasticus) bacteria with increasing levels of LPL supplementation (Lin, p = 0.028, 0.006, 0.003, and 0.003, respectively). Conclusion: The LPL supplementation had antimicrobial effects on several cellulolytic and lipolytic bacteria, with no significant difference in nutrient degradability (DM and neutral detergent fiber) and general bacterial counts, suggesting that LPL supplementation might increase the enzymatic activity of rumen bacteria. Therefore, LPL supplementation may be more effective as an antimicrobial agent rather than as an emulsifier in the rumen.

Plant Diversity of Qurecus mongolica Forest in Mt. Biryong (비룡산 신갈나무림의 식물 다양성)

  • Kim, Jun-Soo;Hong, Jin-Ki;Kim, Kyung-Soo;Cho, Yong-Chan;Bae, Kwan-Ho
    • Journal of agriculture & life science
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    • v.45 no.3
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    • pp.9-18
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    • 2011
  • This study was performed to investigate species diversity of understory in Mt. Biryong. The quadrat size was installed based on the result of analysis of Species-Area Curve. The vascular plants were enlisted 107 taxa: 47 families, 80 genera, 91 species, 11 varieties, 2 subspecies, and 3 forms. The three taxa such as Carex okamotoi, Philadelphus schrenkii var. schrenkii, and Weigela subsessilis were enlisted from the surveyed sites as the Korean endemic plants. Due to the list from the Korea Forestry Administration, Rhododendron micranthum was enlisted as the rare plant. The growth from was categorized followed by forbs, shrubs and trees, respectively.

Status, Distribution and Diversity of Invasive Forest Undergrowth Species in the Tropics: a Study from Northeastern Bangladesh

  • Rahman, Md. Habibur;Khan, Mohammed Abu Sayed Arfin;Fardusi, Most. Jannatu;Roy, Bishwajit
    • Journal of Forest and Environmental Science
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    • v.26 no.3
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    • pp.149-159
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    • 2010
  • This paper analyzes data on the composition, status, diversity, and distribution pattern of invasive forest undergrowth in a protected area (Khadimnagar National Park) of Northeastern Bangladesh. Assessment was done by means of stratified random sampling to diversify the invasive forest undergrowth species. For vegetation survey, 45 plots were taken randomly in ($2m{\times}2m$) circular plot from three topographical regions namely top of the hill, middle slope and plain land (15 plots from each region) and a total of 715 individuals, 22 invasive species belonging to 17 families were recorded from the study site. Among invasive species, shrubs constitute 10 species, herbs 9 species, and vines 3 species respectively. Mass number of invasive undergrowth species was grows in plain land (45.45%) followed by middle slope (31.82%). Based on the survey, invasive undergrowth plants of study areas were also categorized into three degrees of invasiveness e.g., highly invasive, moderately invasive and potentially invasive. Herbs, shrubs, and vines constitute the highest density at Chromolaema odorata (Linn.) King. (1.09), relative density at Chromolaema odorata (Linn.) King. 6.85%; highest and lowest frequency was calculated at Cassia alata L. (64.44%) and Diplazium esculentum (24.44%); for relative frequency the highest was Cassia alata L., which occupies 6.64%. Determination of the abundance of the different species revealed that Cassia alata L., constitutes (3.36) followed by Pteris cretica Wilsonii (3.14) of the area. The presence of invasive undergrowth species always reduced the number of associated species. Therefore, an extensive in-depth long-term investigation, proper policy formulation and management interventions and further study and continuous monitoring on their impacts need to be triggered targeting the control of the invasive undergrowth species of this protected area. In this aspect, national and international organization could help to conserve its biodiversity.

Further Analysis on Selective Diversity Reception for Detection of M-ary Signals Over Nakagami Fading Channels

  • Na, Seung-Gwan;Kim, Chang-Hwan;Chin, Yong-Ohk
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.30 no.11C
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    • pp.1045-1052
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    • 2005
  • The symbol error probability of M-ary PSK (MPSK) and QAM (MQAM) systems using the branch with the largest signal-to-noise ratio (SNR) at the output of L-branch selection combining (SC) in frequency-nonselective slow Nakagami fading channels with an additive white Gaussian noise (AWGN) is derived theoretically For integer values of the Nakagami fading parameter m, the general formula for evaluating symbol error rate (SER) of MPSK signals in the independent branch diversity system comprises numerical analyses with the integral-form expressions. An exact closed-form SER performance of MQAM signals under the effect of SC diversity via numerical integration is presented. These performance evaluations allow designers to determine M-ary modulation methods for Nakagami fading channels.

Evaluation on MRC Diversity Reception of M-ary PSK and DPSK Signals on Wireless Fading Channels

  • Kim, Chung-Sock;Kim, Chang-Hwan;Jin, Yong-Ok
    • Journal of electromagnetic engineering and science
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    • v.7 no.3
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    • pp.109-115
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    • 2007
  • The performances of M-ary PSK(MPSK) systems using L-branch maximum ratio combining(MRC) diversity reception in frequency-nonselective slow Rician fading channels are derived theoretically. Especially we investigate the effect of number of symbols on the difference between the approximation to bit error probability and the exact bit error rate(BER) in evaluating the performance of MPSK signals through numerical analyses. On the other hand, when M-ary DPSK(MDPSK) signals experience the Rician fading channels, the general formula for evaluating BER of MDPSK signals in the independent branch diversity system is presented using the integral-form expressions.

Performance Analysis of the Asynchronous IMT-2000 System Receiver with Array Antenna and MRC-Diversity (Array 안테나와 최대비 합성 다이버시티를 채용한 비동기식 IMT-2000 시스템의 수신성능 분석)

  • 왕용철;우병훈;강희조
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2001.05a
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    • pp.191-196
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    • 2001
  • 본 논문은 광대역 무선통신환경에서 3GCPP(3.4 Generation Partnership proiect)에 기반한 비동기 IMT-2000 시스템의 송수신 시스템을 구성하여 기지국의 수신성능을 분석하였다. 적용된 시스템은 이동국과 기지국간의 Uplink 채널 환경을 고려하였으며, 기지국의 수신신호는 다중경로 페이딩(Multi-path Fading)과 다중접속간섭(Mult Access Interference : MAI)의 영향으로 성능이 열화되며 이에 대한 대책으로 Array 안테나를 채용하였을 경우와 MRC-Diversity(Maximal Combing Diversity)를 채용하였을 경우의 수신성능을 동일한 환경에서 비교 분석하였다. 본 논문에서 적용한 Array 안테나는 수신 신호의 방향에 파라 적응적으로 추적하여 수신 SNR(Singnal-to-Noise power Ratio)을 최대로 형성하여 시스템의 성능을 개선하는 기법이며, 안테나의 방향성(Directivity : =2.67을 이용하는 3-element Array 안테나를 채용하였다. 최대비 합성 다이버시티 기법은 다이버시티 기법 중 수신효율이 가장 좋으며 가지수(L=2)를 함수로 사용하였다. 성능분석 결과 다중경로 페이딩과 다중접속간섭 환경에서 최대비 합성 다이버시티 기법이 Array 안테나보다 약 Eb/No=4[dB]정도 수신효율이 우수하였다.

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Performance Analysis of Arbitrary Rectangular QAM over Nakagami Fading Channels with MRC in the Presence of Co-channel Interference (동일 채널 간섭이 존재하는 나카가미 채널에서 임의 직사각 QAM 신호의 MRC 다이버시티 수신 성능)

  • 현광민;윤동원;박상규
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.3A
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    • pp.257-265
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    • 2004
  • General closed-form expression is derived and analyzed for the exact bit error rate (BER) performance of the arbitrary rectangular Gray coded QAM signal in conjunction with maximal-ratio combining (MRC) diversity on frequency non-selective slow m-distributed Nakagami fading channel in the presence of co-channel interference. Numerical results demonstrate error performance improvement with the use of MRC diversity reception. The new expressions presented here are suitable for evaluating various cases of practical interest on wireless communication channels.

Effects of Organic Farming on Communities of Arbuscular Mycorrhizal Fungi

  • Lee, Si-Woo;Lee, Eun-Hwa;Eom, Ahn-Heum
    • Mycobiology
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    • v.36 no.1
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    • pp.19-23
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    • 2008
  • Red pepper (Capsicum annum L.) roots and soils representing different agricultural management practices such as conventional (CON), no-chemical (NOC), and organic farming systems (ORG) were collected from 32 farm field sites in Kyunggi, Korea to investigate the effects of these agricultural practices on arbuscular mycorrhizal (AM) symbiosis. ORG inoculum significantly increased plant growth compared to inoculum from CON and NOC. A community analysis of AM fungi (AMF) using morphological features of spores revealed that AMF spore abundance and species diversity were significantly higher in ORG than in CON. Additionally, a community analysis of AMF colonizing roots using a molecular technique revealed higher AMF diversity in ORG than in CON. These results suggest that agricultural practices significantly influence AM fungal community structure and mycorrhizal inoculum potential.