• International Journal of Fuzzy Logic and Intelligent Systems
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• 제13권4호
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• pp.254-268
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• 2013

For real-world clustering tasks, the input data is typically not easily separable due to the highly complex data structure or when clusters vary in size, density and shape. Kernel-based clustering has proven to be an effective approach to partition such data. In this paper, we provide an overview of several fuzzy kernel clustering algorithms. We focus on methods that optimize an fuzzy C-mean-type objective function. We highlight the advantages and disadvantages of each method. In addition to the completely unsupervised algorithms, we also provide an overview of some semi-supervised fuzzy kernel clustering algorithms. These algorithms use partial supervision information to guide the optimization process and avoid local minima. We also provide an overview of the different approaches that have been used to extend kernel clustering to handle very large data sets.

• JSTS:Journal of Semiconductor Technology and Science
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• 제14권3호
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• pp.284-299
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• 2014

Coarse-grained reconfigurable architecture (CGRA)-based multi-core architecture aims at achieving high performance by kernel level parallelism (KLP). However, the existing CGRA-based multi-core architectures suffer from much energy and performance bottleneck when trying to exploit the KLP because of poor resource utilization caused by insufficient flexibility. In this work, we propose a new ring-based sharing fabric (RSF) to boost their flexibility level for the efficient resource utilization focusing on the kernel-stream type of the KLP. In addition, based on the RSF, we introduce a novel inter-CGRA reconfiguration technique for the efficient pipelining of kernel-stream on CGRA-based multi-core architectures. Experimental results show that the proposed approaches improve performance by up to 50.62 times and reduce energy by up to 50.16% when compared with the conventional CGRA-based multi-core architectures.

• 한국생물정보학회:학술대회논문집
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• 한국생물정보시스템생물학회 2005년도 BIOINFO 2005
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• pp.133-133
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• 2005

• ETRI Journal
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• 제36권3호
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• pp.333-342
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• 2014

Most hyper-ellipsoidal clustering (HEC) approaches use the Mahalanobis distance as a distance metric. It has been proven that HEC, under this condition, cannot be realized since the cost function of partitional clustering is a constant. We demonstrate that HEC with a modified Gaussian kernel metric can be interpreted as a problem of finding condensed ellipsoidal clusters (with respect to the volumes and densities of the clusters) and propose a practical HEC algorithm that is able to efficiently handle clusters that are ellipsoidal in shape and that are of different size and density. We then try to refine the HEC algorithm by utilizing ellipsoids defined on the kernel feature space to deal with more complex-shaped clusters. The proposed methods lead to a significant improvement in the clustering results over K-means algorithm, fuzzy C-means algorithm, GMM-EM algorithm, and HEC algorithm based on minimum-volume ellipsoids using Mahalanobis distance.

• Interdisciplinary Bio Central
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• 제4권4호
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• pp.14.1-14.6
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• 2012

Splice site prediction in DNA sequence is a basic search problem for finding exon/intron and intron/exon boundaries. Removing introns and then joining the exons together forms the mRNA sequence. These sequences are the input of the translation process. It is a necessary step in the central dogma of molecular biology. The main task of splice site prediction is to find out the exact GT and AG ended sequences. Then it identifies the true and false GT and AG ended sequences among those candidate sequences. In this paper, we survey research works on splice site prediction based on support vector machine (SVM). The basic difference between these research works is nucleotide encoding technique and SVM kernel selection. Some methods encode the DNA sequence in a sparse way whereas others encode in a probabilistic manner. The encoded sequences serve as input of SVM. The task of SVM is to classify them using its learning model. The accuracy of classification largely depends on the proper kernel selection for sequence data as well as a selection of kernel parameter. We observe each encoding technique and classify them according to their similarity. Then we discuss about kernel and their parameter selection. Our survey paper provides a basic understanding of encoding approaches and proper kernel selection of SVM for splice site prediction.

• KSII Transactions on Internet and Information Systems (TIIS)
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• 제8권8호
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• pp.2895-2912
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• 2014

Content-based image retrieval has been the most important technique for managing huge amount of images. The fundamental yet highly challenging problem in this field is how to measure the content-level similarity based on the low-level image features. The primary difficulties lie in the great variance within images, e.g. background, illumination, viewpoint and pose. Intuitively, an ideal similarity measure should be able to adapt the data distribution, discover and highlight the content-level information, and be robust to those variances. Motivated by these observations, we in this paper propose a probabilistic similarity learning approach. We first model the distribution of low-level image features and derive the free energy kernel (FEK), i.e., similarity measure, based on the distribution. Then, we propose a learning approach for the derived kernel, under the criterion that the kernel outputs high similarity for those images sharing the same class labels and output low similarity for those without the same label. The advantages of the proposed approach, in comparison with previous approaches, are threefold. (1) With the ability inherited from probabilistic models, the similarity measure can well adapt to data distribution. (2) Benefitting from the content-level hidden variables within the probabilistic models, the similarity measure is able to capture content-level cues. (3) It fully exploits class label in the supervised learning procedure. The proposed approach is extensively evaluated on two well-known databases. It achieves highly competitive performance on most experiments, which validates its advantages.

• KSII Transactions on Internet and Information Systems (TIIS)
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• 제14권9호
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• pp.3762-3781
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• 2020

Infrared pedestrian target recognition is a vital problem of significant interest in computer vision. In this work, a novel infrared pedestrian target recognition method that uses heterogeneous features with multi-kernel transfer learning is proposed. Firstly, to exploit the characteristics of infrared pedestrian targets fully, a novel multi-scale monogenic filtering-based completed local binary pattern descriptor, referred to as MSMF-CLBP, is designed to extract the texture information, and then an improved histogram of oriented gradient-fisher vector descriptor, referred to as HOG-FV, is proposed to extract the shape information. Second, to enrich the semantic content of feature expression, these two heterogeneous features are integrated to get more complete representation for infrared pedestrian targets. Third, to overcome the defects, such as poor generalization, scarcity of tagged infrared samples, distributional and semantic deviations between the training and testing samples, of the state-of-the-art classifiers, an effective multi-kernel transfer learning classifier called MK-TrAdaBoost is designed. Experimental results show that the proposed method outperforms many state-of-the-art recognition approaches for infrared pedestrian targets.

• 한국문헌정보학회지
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• 제45권2호
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• pp.251-275
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• 2011

본 논문에서는 단백질 간 상호작용 자동 추출을 위해서 기존에 연구되어 높은 성능을 나타낸 구문 트리 커널을 확장한 시맨틱 구문 트리 커널을 제안한다. 기존 구문 트리 커널의 문제점은 구문 트리의 단말 노드를 구성하는 개별 어휘에 대한 단순 외형적 비교로 인해, 실제 의미적으로는 유사한 두 구문 트리의 커널 값이 상대적으로 낮아지는 현상이며 결국 상호작용 자동 추출의 전체 성능에 악영향을 줄 수 있다는 점이다. 본 논문에서는 두 구문 트리의 구문적 유사도(syntactic similarity)와 어휘 의미적 유사도(lexical semantic similarity)를 동시에 효과적으로 계산하여 이를 결합하는 새로운 커널을 고안하였다. 어휘 의미적 유사도 계산을 위해서 문맥 및 워드넷 기반의 어휘 중의성 해소 시스템과 이 시스템의 출력으로 도출되는 어휘 개념(WordNet synset)의 추상화를 통한 기존 커널의 확장을 시도하였다. 실험에서는 단백질 간 상호작용 추출(PPII, PPIC) 성능의 심층적 최적화를 위해서 기존의 SVM에서 지원되던 정규화 매개변수 외에 구문 트리 커널의 소멸인자와 시맨틱 구문 트리 커널의 어휘 추상화 인자를 새롭게 도입하였다. 이를 통해 구문 트리 커널을 적용함에 있어서 소멸인자 역할의 중요성을 확인할 수 있었고, 시맨틱 구문 트리 커널이 기존 시스템의 성능향상에 도움을 줄 수 있음을 실험적으로 보여주었다. 특히 단백질 간 상호작용식별 문제보다도 비교적 난이도가 높은 상호작용 분류에 더욱 효과적임을 알 수 있었다.

• 한국수자원학회:학술대회논문집
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• 한국수자원학회 2010년도 학술발표회
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• pp.283-287
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• 2010

Stochastic simulation of hydrologic data has been widely developed for several decades. However, despite the several advances made in literature still a number of limitations and problems remain. In the current study, some stochastic simulation approaches tackling some of the existing problems are discussed. The presented models are based on nonparametric techniques such as block bootstrapping, and K-nearest neighbor resampling (KNNR), and kernel density estimate (KDE). Three different types of the presented stochastic simulation models are (1) Pilot Gamma Kernel estimate with KNNR (a single site case) and (2) Enhanced Nonparametric Disaggregation with Genetic Algorithm (a disaggregation case). We applied these models to one of the most challenging and critical river basins in USA, the Colorado River. These models are embedded into the hydrological software package, Pros and cons of the models compared with existing models are presented through basic statistics and drought and storage-related statistics.

• Computers and Concrete
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• 제33권1호
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• pp.55-75
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• 2024

The present study introduces an optimum performance soft computing model for predicting the compressive strength of high-performance concrete (HPC) by comparing models based on conventional (kernel-based, covariance function-based, and tree-based), advanced machine (least square support vector machine-LSSVM and minimax probability machine regressor-MPMR), and deep (artificial neural network-ANN) learning approaches using a common database for the first time. A compressive strength database, having results of 1030 concrete samples, has been compiled from the literature and preprocessed. For the purpose of training, testing, and validation of soft computing models, 803, 101, and 101 data points have been selected arbitrarily from preprocessed data points, i.e., 1005. Thirteen performance metrics, including three new metrics, i.e., a20-index, index of agreement, and index of scatter, have been implemented for each model. The performance comparison reveals that the SVM (kernel-based), ET (tree-based), MPMR (advanced), and ANN (deep) models have achieved higher performance in predicting the compressive strength of HPC. From the overall analysis of performance, accuracy, Taylor plot, accuracy metric, regression error characteristics curve, Anderson-Darling, Wilcoxon, Uncertainty, and reliability, it has been observed that model CS4 based on the ensemble tree has been recognized as an optimum performance model with higher performance, i.e., a correlation coefficient of 0.9352, root mean square error of 5.76 MPa, and mean absolute error of 4.1069 MPa. The present study also reveals that multicollinearity affects the prediction accuracy of Gaussian process regression, decision tree, multilinear regression, and adaptive boosting regressor models, novel research in compressive strength prediction of HPC. The cosine sensitivity analysis reveals that the prediction of compressive strength of HPC is highly affected by cement content, fine aggregate, coarse aggregate, and water content.