• Title/Summary/Keyword: KACC 91532

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De Novo Assembly and Comparative Analysis of the Enterococcus faecalis Genome (KACC 91532) from a Korean Neonate

  • Ham, Jun Sang;Kwak, Woori;Chang, Oun Ki;Han, Gi Sung;Jeong, Seok Geun;Seol, Kuk Hwan;Kim, Hyoun Wook;Kang, Geun Ho;Park, Beom Young;Lee, Hyun-Jeong;Kim, Jong Geun;Kim, Kyu-Won;Sung, Samsun;Lee, Taeheon;Cho, Seoae;Kim, Heebal
    • Journal of Microbiology and Biotechnology
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    • v.23 no.7
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    • pp.966-973
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    • 2013
  • Using a newly constructed de novo assembly pipeline, finished genome level assembly had been conducted for the probiotic candidate strain E. faecalis KACC 91532 isolated from a stool samples of Korean neonates. Our gene prediction identified 3,061 genes in the assembled genome of the strain. Among these, nine genes were specific only for the E. faecalis KACC 91532, compared with all of the four known reference genomes (EF62, D32, V583, OG1RF). We identified genes related to phenotypic characters and detected E. faecalis KACC 91532-specific evolutionarily accelerated genes using dN/dS analysis. From these results, we found the potential risk of KACC 91532 as a useful probiotic strain and identified some candidate genetic variations that could affect the function of enzymes.

Development of Probiotic Dairy Product for the Normalization of Microbial Flora in Korean Infants (한국인 영유아 장내균총 정상화를 위한 프로바이오틱 유제품의 개발)

  • Kim, Min-Kyung;Choi, A-Ri;Han, Gi-Sung;Jeong, Seok-Geun;Chae, Hyun-Seok;Jang, Ae-Ra;Seol, Kuk-Hwan;Oh, Mi-Hwa;Kim, Dong-Hun;Ham, Jun-Sang
    • Food Science of Animal Resources
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    • v.31 no.2
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    • pp.290-295
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    • 2011
  • This study was conducted to develop an effective probiotic dairy product to normalize the microbial flora in Korean infants. A total of 2,200 colonies were isolated from 25 Korean neonates, and 16S rRNA of 348 isolates was analyzed. Approximately 40% of the lactic-acid producing bacterial isolates were Enterococcus faecalis, and 34.2% of them were strains similar to XR7 in the GenBank database. The fastest growing strain in MRS broth was registered as 91532 by the KACC. The selected strain was freeze-dried and utilized to ferment a milk-containing rice soup, tarakjuk. Microbiological, physico-chemical, and sensory characteristics of the fermented tarakjuk were compared with fermented milk and tarakjuk. E. faecalis KACC 91532 increased from $6.14{\pm}0.19$ to $7.36{\pm}0.13$ Log CFU/mL, and can be useful as a probiotic, as described in the Standards for Functional Health Foods.