• Title/Summary/Keyword: Interval Mapping

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Characterization of Purple-discolored, Uppermost Leaves of Soybean; QTL Mapping, HyperspectraI Imaging, and TEM Observation

  • JaeJin Lee;Jeongsun Lee;Seongha Kwon;Heejin You;Sungwoo Lee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.187-187
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    • 2022
  • Purple-discoloration of the uppermost leaves has been observed in some soybean cultivars in recent years. The purpose of this study was to characterize the novel phenotypic changes between the uppermost and middle leaves via multiple approaches. First, quantitative trait loci mapping was conducted to detect loci associated with the novel phenotype using 85 recombinant inbred lines (RILs) of the 'Daepung' × PI 96983 population. 180K SNP data, a major quantitative trait locus (QTL) was identified at around 60 cM of chromosome 6, which accounts for 56% of total phenotypic variance. The genomic interval is about ~700kb, and a list of annotated genes includes the T-gene which is known to control pubescence and seed coat color and is presumed to encode flavonoid 35-hydroxylase (F3'H). Based on Hyperspectral imaging, the reflectance at 528-554 nm wavelength band was extremely reduced in the uppermost leaves compared to the middle (green leaves), which is presumed die to the accumulation of anthocyanins. In addition, purple-discolored leaf tissues were observed and compared to normal leaves using a transmission electronic microscope (TEM). Base on observations of the cell organelles, the purple-discolored uppermost leaves had many pigments formed in the epidermal cells unlike the normal middle leaves, and the cell wall thickness was twice as thick in the discolored leaves. The thickness of the thylakoid layer in the chloroplast the number of starch grains, the size of starch all decreased in the discolored leaves, while the number of plastoglobule and mitochondria increased.

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Calculation of Sediment Volume of the Agriculture Reservoir Using DGPS Echo-Sounder (DGPS 음향 측심기를 이용한 농업용 저수지의 퇴적량 산정)

  • Park Seung-Ki;Jeong Jae- Hoon
    • Spatial Information Research
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    • v.13 no.3 s.34
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    • pp.297-307
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    • 2005
  • This study was performed to get the basic data for the dredging project and logical maintenance of the Yaedang reservoir. The survey of reservoir capacity for calculation of sediment volume carried out using DGPS Echo-Sounder during November $25\~30$ in 2004. The latitude and longitude signal from GPS satellite was received a second interval with the UTM coordinate system. Water depth was measured 0.2 second interval by Echo-sounder sensor in MIDAS Surveyor. The UTM coordinate datum were transformed into standard coordinate datum of Korean(TM coordinate datum) using Arc Info System. Mapping of contour was used Sufer, Arc View and Auto CAB Program Storage capacity of Yaedang reservoir was estimated by average contour area method. Result of this time investigation for useful storage determination of Yaedang reservoir was showed 4,601.585 ha-m and was differenced less 5.425ha-m the bygones useful storage.

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Discretization of Continuous-Valued Attributes considering Data Distribution (데이터 분포를 고려한 연속 값 속성의 이산화)

  • Lee, Sang-Hoon;Park, Jung-Eun;Oh, Kyung-Whan
    • Journal of the Korean Institute of Intelligent Systems
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    • v.13 no.4
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    • pp.391-396
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    • 2003
  • This paper proposes a new approach that converts continuous-valued attributes to categorical-valued ones considering the distribution of target attributes(classes). In this approach, It can be possible to get optimal interval boundaries by considering the distribution of data itself without any requirements of parameters. For each attributes, the distribution of target attributes is projected to one-dimensional space. And this space is clustered according to the criteria like as the density value of each target attributes and the amount of overlapped areas among each density values of target attributes. Clusters which are made in this ways are based on the probabilities that can predict a target attribute of instances. Therefore it has an interval boundaries that minimize a loss of information of original data. An improved performance of proposed discretization method can be validated using C4.5 algorithm and UCI Machine Learning Data Repository data sets.

Interval Hough Transform For Prominent Line Detection (배경선 추출을 위한 구간 허프 변환)

  • Choi, Jin-Mo;Kim, Changick
    • Journal of Korea Multimedia Society
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    • v.16 no.11
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    • pp.1288-1296
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    • 2013
  • The prominent line at the singe image is the important fact for understanding spatial structure or estimating aesthetic scoring. According to this thesis, the abstraction of the background line helps analyzing vanishing point, reconstitution of 3 dimensions, and determining of image sloppiness. It also makes easy to calculate the rule of thirds. This thesis is composed of section hough transform mapping, prioritizing of the prominent line, and selection of the prominent line. These technologies are departmentalized to be applied abstraction of traffic lane, analyzing of building structure, abstraction of vanishing point, and abstraction of straight line documentation. This gives the choice that users are able to compose technology by considering characteristic of objects and luminous environment. This thesis also can be applied to abstract circle. The interval hough transform is able to select the number of prominent line which users want to abstract. It can analyze important prominent line numbers at the image and then abstract the lines, too. Results of prominent lines by experiments would be show at this thesis.

Resolution of Shallow Marine Subsuface Structure Image Associated with Acquisition Parameters of High-resolution Multi-channel Seismic Data (고해상 다중채널 탄성파탐사 자료취득변수에 따른 천부 해저지층영상의 해상도)

  • Lee Ho-Young;Koo Nam-Hyung;Park Keun-Pil;Yoo Dong-Geun;Kang Dong-Hyo;Kim Young-Gun;Seo Gab-Seok;Hwang Kyu-Duk;Kim Jong-Chon;Kim Ji-Soo
    • Geophysics and Geophysical Exploration
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    • v.6 no.3
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    • pp.126-133
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    • 2003
  • High-resolution shallow marine seismic surveys have been carried out for the resources exploration, engineering applications and Quaternary mapping. To improve the resolution of subsurface structure image, multichannel digital technique has been applied. The quality of the image depends on the vertical and horizontal resolution and signal to noise (S/N) ratio which are associated with the data acquisition parameters such as sample interval, common midpoint (CMP) interval and CMP fold. To understand the effect of the acquisition parameters, a test survey was carried out off Yeosu and the acquired data were analyzed. A 30 $in^3$ small air gun was used as a seismic source and 8 channel streamer cable with a 5 m group interval was used as a receiver. The data were digitally recorded with a shot interval of 2 s and sample interval of 0.1 ms. The acquired data were resampled with various sample intervals, CMP intervals and CMP folds. The resampled data were processed, plotted as seismic sections and compared each other. The analysis results show that thin bed structure with ${\~}1m$ thickness and ${\~}6^{\circ}$ slope can be imaged with good resolution and continuity and low noise using the acquisition parameters with a sample interval shorter than 0.2 ms, CMP interval shorter than 2.5 m and CMP fold more than 4. Because seismic resolution is associated with the acquisition parameters, the quality of the subsurface structure can be imaged successfully using suitable and optimum acquisition parameters.

Relationship between Abnormal Hyperintensity on T2-Weighted Images Around Developmental Venous Anomalies and Magnetic Susceptibility of Their Collecting Veins: In-Vivo Quantitative Susceptibility Mapping Study

  • Yangsean Choi;Jinhee Jang;Yoonho Nam;Na-Young Shin;Hyun Seok Choi;So-Lyung Jung;Kook-Jin Ahn;Bum-soo Kim
    • Korean Journal of Radiology
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    • v.20 no.4
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    • pp.662-670
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    • 2019
  • Objective: A developmental venous anomaly (DVA) is a vascular malformation of ambiguous clinical significance. We aimed to quantify the susceptibility of draining veins (χvein) in DVA and determine its significance with respect to oxygen metabolism using quantitative susceptibility mapping (QSM). Materials and Methods: Brain magnetic resonance imaging of 27 consecutive patients with incidentally detected DVAs were retrospectively reviewed. Based on the presence of abnormal hyperintensity on T2-weighted images (T2WI) in the brain parenchyma adjacent to DVA, the patients were grouped into edema (E+, n = 9) and non-edema (E-, n = 18) groups. A 3T MR scanner was used to obtain fully flow-compensated gradient echo images for susceptibility-weighted imaging with source images used for QSM processing. The χvein was measured semi-automatically using QSM. The normalized χvein was also estimated. Clinical and MR measurements were compared between the E+ and E- groups using Student's t-test or Mann-Whitney U test. Correlations between the χvein and area of hyperintensity on T2WI and between χvein and diameter of the collecting veins were assessed. The correlation coefficient was also calculated using normalized veins. Results: The DVAs of the E+ group had significantly higher χvein (196.5 ± 27.9 vs. 167.7 ± 33.6, p = 0.036) and larger diameter of the draining veins (p = 0.006), and patients were older (p = 0.006) than those in the E- group. The χvein was also linearly correlated with the hyperintense area on T2WI (r = 0.633, 95% confidence interval 0.333-0.817, p < 0.001). Conclusion: DVAs with abnormal hyperintensity on T2WI have higher susceptibility values for draining veins, indicating an increased oxygen extraction fraction that might be associated with venous congestion.

Identification of Quantitative Traits Loci (QTL) Affecting Growth Traits in Pigs

  • Kim, T.H.;Choi, B.H.;Lee, H.K;Park, H.S.;Lee, H.Y.;Yoon, D.H.;Lee, J.W.;Jeong, G.J.;Cheong, I.C.;Oh, S.J.;Han, J.Y.
    • Asian-Australasian Journal of Animal Sciences
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    • v.18 no.11
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    • pp.1524-1528
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    • 2005
  • Molecular genetic markers were used to detect chromosomal regions which contain economically important traits such as growth, carcass, and meat quality traits in pigs. A three generation resource population was constructed from a cross between Korean native boars and Landrace sows. A total of 240 F2 animals from intercross of F1 was produced. Phenotypic data on 17 traits, birth weight, body weights at 3, 5, 12, and 30 weeks of age, teat number, carcass weight, backfat thickness, body fat, backbone number, muscle pH, meat color, drip loss, cooking loss, water holding capacity, shear force, and intramuscular fat content were collected for F2 animals. Animals including grandparents (F0), parents (F1), and offspring (F2) were genotyped for 80 microsatellite markers covering from chromosome 1 to 10. Least squares regression interval mapping was used for quantitative trait loci (QTL) identification. Significance thresholds were determined by permutation tests. A total of 10 QTL were detected at 5% chromosome-wide significance levels for growth traits on SSCs 2, 4, 5, 6, and 8.

Group Scheduling for Efficient Channel Utilization in Optical Burst Switched Networks (OBS 네트워크의 효율적 채널 이용을 위한 그룹 스케줄링 방식)

  • 신종덕
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.40 no.10
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    • pp.51-58
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    • 2003
  • In this paper, we propose a group scheduling scheme to efficiently utilize network resources for core nodes in optical burst switching networks. This scheme schedules multiple bursts utilizing an interval graph to obtain the maximum stable set using the information such as arrival times and burst lengths from the collected header packets. Simultaneous scheduling of multiple bursts in a scheduling window results in lower burst loss probability and increased channel utilization than those proposed previously using one-to-one mapping. Simulation results for both cases of variable and fixed burst sizes show that the group scheduling scheme is better than the immediate scheduling, so called Latest Available Unused Channel with Void Filling, scheme in both performance metrics above mentioned.

A Least Squares Regression Model to Detect Quantitative Trait Loci with Polar Overdominance in a Cross of Outbred Breeds: Simulation

  • Kim, Jong-Joo;Dekkers, Jack C.M.
    • Asian-Australasian Journal of Animal Sciences
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    • v.26 no.11
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    • pp.1536-1544
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    • 2013
  • A least squares regression interval mapping model was derived to detect quantitative trait loci (QTL) with a unique mode of genomic imprinting, polar overdominance (POD), under a breed cross design model in outbred mammals. Tests to differentiate POD QTL from Mendelian, paternal or maternal expression QTL were also developed. To evaluate the power of the POD models and to determine the ability to differentiate POD from non-POD QTL, phenotypic data, marker data and a biallelic QTL were simulated on 512 F2 offspring. When tests for Mendelian versus parent-of-origin expression were performed, most POD QTL were classified as partially imprinted QTL. The application of the series of POD tests showed that more than 90% and 80% of medium and small POD QTL were declared as POD type. However, when breed-origin alleles were segregating in the grand parental breeds, the proportion of declared POD QTL decreased, which was more pronounced in a mating design with a small number of parents ($F_0$ and $F_1$). Non-POD QTL, i.e. with Mendelian or parent-of-origin expression (complete imprinting) inheritance, were well classified (>90%) as non-POD QTL, except for QTL with small effects and paternal or maternal expression in the design with a small number of parents, for which spurious POD QTL were declared.

Semantic Types and Representation of Korean Set Time Expressions (한국어 집합 시간 표현의 의미 유형과 표상)

  • Kim, Mun-Hyong;Jo, Yu-Mi;You, Hyun-Jo;Jang, Ha-Yeon;Kim, Yoon-Shin;Nam, Seung-Ho;Shin, Hyo-Pil
    • Language and Information
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    • v.16 no.1
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    • pp.25-43
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    • 2012
  • This study introduces set-denoting time expressions in Korean, which can be divided into simple and complex types. It was found that while the simple type expressions are easily represented within ISO-TimeML, a time-expression markup language, some complex type set-denoting expressions are not. Therefore, this study analyzes the reason for these difficulties in representing complex type expressions, as well as suggests the introduction of @measure and @interpretation attributes in the TIMEX3 tag. The @measure attribute represents the time interval, and the @interpretation attribute is used to distinguish distributive readings from cumulative readings. Additionally this paper suggests that a mapping between these and other attributes are required in TLINK.

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