• Title/Summary/Keyword: Internal transcribed spacer rDNA

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Isolation of a Pestalotiopsis Species Degrading Mucilage from Fruit of Opuntia ficus-indica var. Saboten

  • Huh, Yoon-Hee;Ko, Young-Hwan
    • Journal of Applied Biological Chemistry
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    • v.50 no.4
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    • pp.221-226
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    • 2007
  • The high molecular-weight mucilage extracted and purified from cactus fruit of Opuntia ficus-indica var. Saboten was degraded by the cell-free culture filtrate of a fungus isolated from soil. TLC analysis of the polymeric mucilage after incubation with the fungal culture filtrate confirmed its degradation. When the degradation products were tested for their qualitative reactions with ninhydrin and phenol-sulfuric acid, only phenol-sulfuric acid gave positive development, and ninhydrin did not show any observable color reaction. This coloring reaction suggested the presence of a carbohydrate without an amino group within the mucilage. Analyses by HPLC and liquid gel permeation chromatography on sephadex G-100 also provided additional information on degradation of the mucilage by the fungal culture filtrate. The sequences of ITS-5.8S rDNA from the fungal isolate that was cultivated for the preparation of mucilage-degrading enzyme showed 99% similarity to those of Pestalotiopsis aquatica.

Occurrence of Damping-off Caused by Pythium spinosum on Cucumis melo in Korea

  • Park, Mi-Jeong;Back, Chang-Gi;Han, Kyung-Sook;Park, Jong-Han
    • Research in Plant Disease
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    • v.22 no.3
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    • pp.190-193
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    • 2016
  • In 2010 and 2012, damping-off symptoms were found on melon seedlings grown in Yeongam and Suncheon, Korea. Water-soaked and discolored lesions appeared on the lower stems of the infected plants. The diseased plants became wilted and stunted, and eventually collapsed. On the basis of morphological characteristics and molecular analyses of internal transcribed spacer (ITS) rDNA and cytochrome oxidase II (cox2) sequences, the causal organism was identified as Pythium spinosum. The isolates were pathogenic to melon under pot conditions. To our knowledge, this is the first report of P. spinosum causing damping-off on melon in Korea.

First Report of Three Species of Endophytic Fungi Isolated from Needle Leaves of Conifers in Korea (침엽수의 잎에서 분리한 국내 미기록 내생균 3종에 대한 보고)

  • Eo, Ju-Kyeong;Lee, Bong-Hyung;Eom, Ahn-Heum
    • The Korean Journal of Mycology
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    • v.43 no.4
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    • pp.272-276
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    • 2015
  • We examined endophytic fungi from the needle leaves of three species of conifers in Korea: Abies nephrolepis, Thuja koraiensis, Pinus koraiensis. Endophytic fungi were isolated from the surface-sterilized leaves and identified based on morphological characteristics and Internal transcribed spacer sequences of rDNA. Three species of endophytic fungi isolated in this study were the first reported in Korea: Cryptosporiopsis actinidiae, Pestalotiopsis mangiferae, Pyrenochaeta cava.

A Note on a Dark Septate Endophyte Phialocephala piceae Isolated from Needle Leaves of Thuja koraiensis in Korea

  • Kim, Dong-Yeo;Eo, Ju-Kyeong;Park, Hyeok;Eom, Ahn-Heum
    • The Korean Journal of Mycology
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    • v.44 no.4
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    • pp.338-341
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    • 2016
  • A dark septate endophytic fungal strain 13E043 was isolated from the needle leaves of Thuja koraiensis from a forest in Korea. Morphological characteristics of conidia and phialids. Along with a molecular phylogenetic analysis based on the internal transcribed spacer region of rDNA, the isolate was identified as Phialocephala piceae (also known as Phaeomollisia piceae). This is the first report of a dark septate endophyte isolated from the foliage of conifer trees in Korea.

Characterization of a Zygomycete Fungus, Mortierella minutissima from Freshwater of Yeongsan River in Korea

  • Nguyen, Thi Thuong Thuong;Lee, Hyang Burm
    • The Korean Journal of Mycology
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    • v.44 no.4
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    • pp.346-349
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    • 2016
  • During a survey of fungal diversity of the order Mortierellales, a zygomycete strain, EML-YS717-1, was isolated from a freshwater sample collected from the Yeongsan River in Gwangju, Korea. Based on its morphological characteristics and a phylogenetic analysis of the internal transcribed spacer (ITS1 and ITS2) and 5.8S rDNA sequences, the strain was identified as Mortierella minutissima. To the best of our knowledge, M. minutissima, has not previously been authentically reported in Korea.

Isolation and Characterization of Blakeslea trispora Isolated from Gut of Grasshopper and Soldier Fly Larva in Korea

  • Nguyen, Thi Thuong Thuong;Lee, Hyang Burm
    • The Korean Journal of Mycology
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    • v.44 no.4
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    • pp.355-359
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    • 2016
  • During a survey of fungal diversity in insect guts in Korea, two fungal strains, EML-PGH2 and EML-PUKI88, were isolated from the gut of grasshopper and soldier fly larvae inhabiting the bulrush plants at a pond located in the Chonnam National University Arboretum, Gwangju, Korea. Based on their morphological characteristics and a phylogenetic analysis of the internal transcribed spacer (ITS1 and ITS2) and 5.8S rDNA sequences, the strains were identified as Blakeslea trispora. To our knowledge, the zygomycete species B. trispora has not been previously described in Korea.

First Report of Neopestalotiopsis australis Isolated from Soil in Korea

  • Park, Sangkyu;Lee, Seung-Yeol;Lee, Jae-Jin;Back, Chang-Gi;Ten, Leonid;Lee, Hyang Burm;Jung, Hee-Young
    • The Korean Journal of Mycology
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    • v.44 no.4
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    • pp.360-364
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    • 2016
  • Fungal strain KNU16-005 was isolated from field soil in Jeollabuk-do, Korea. Based on its morphological characteristics and phylogenic analysis using internal transcribed spacer regions of rDNA, ${\beta}$-tubulin and translation elongation factor 1-alpha gene sequences of KNU16-005 were identified as Neopestalotiopsis australis. This species has not been previously reported in Korea.

A New Report on Oidiodendron flavum Isolated from Field Soil in Korea

  • Adhikari, Mahesh;Kim, Sangwoo;Yadav, Dil Raj;Babu, Anam Giridhar;Kim, Changmu;Lee, Hyang Burm;Lee, Youn Su
    • The Korean Journal of Mycology
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    • v.42 no.3
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    • pp.235-238
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    • 2014
  • Oidiodendron flavum KNU13-6 was isolated for the first time from field soil in Korea and identified based on the internal transcribed spacer region (ITS) of rDNA and morphological characteristics. Based on phylogenetic analysis of ITS and morphological characteristics, the species has not been previously reported in Korea.

The First Report of Postharvest Stem Rot of Kohlrabi Caused by Sclerotinia sclerotiorum in Korea

  • Kim, Joon-Young;Aktaruzzaman, Md.;Afroz, Tania;Hahm, Young-Il;Kim, Byung-Sup
    • Mycobiology
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    • v.42 no.4
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    • pp.409-411
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    • 2014
  • In March 2014, a kohlrabi stem rot sample was collected from the cold storage room of Daegwallyong Horticultural Cooperative, Korea. White and fuzzy mycelial growth was observed on the stem, symptomatic of stem rot disease. The pathogen was isolated from the infected stem and cultured on potato dextrose agar for further fungal morphological observation and to confirm its pathogenicity, according to Koch's postulates. Morphological data, pathogenicity test results, and rDNA sequences of internal transcribed spacer regions (ITS 1 and 4) showed that the postharvest stem rot of kohlrabi was caused by Sclerotinia sclerotiorum. This is the first report of postharvest stem rot of kohlrabi in Korea.

A New Record of Pseudallescheria boydii Isolated from Crop Field Soil in Korea

  • Babu, A. Giridhar;Kim, Sang Woo;Yadhav, Dil Raj;Adhikari, Mahesh;Kim, Changmu;Lee, Hyang Burm;Lee, Youn Su
    • Mycobiology
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    • v.42 no.4
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    • pp.397-400
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    • 2014
  • Pseudallescheria boydii KNU13-2 was isolated from crop field soil and identified by analysis of internal transcribed spacer regions of rDNA and morphological characteristics. In the literature, P. boydii has been mentioned as a human pathogen. This is the first record of P. boydii isolated from crop field soil in Korea.