• 제목/요약/키워드: Internal transcribed spacer (ITS)

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Phylogenetic Identification of Korean Gymnopus spp. and the First Report of 3 Species: G. iocephalus, G. polygrammus, and G. subnudus

  • Jang, Seokyoon;Jang, Yeongseon;Lim, Young Woon;Kim, Changmu;Ahn, Byoung Jun;Lee, Sung-Suk;Kim, Jae-Jin
    • Mycobiology
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    • 제44권3호
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    • pp.131-136
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    • 2016
  • Gymnopus is a cosmopolitan genus of agaric fungi and consists of ~300 species. In Korea, Gymnopus represents common saprobic mushrooms, and 12 species have been reported in Korea. Several Gymnopus specimens were collected in Korea between 2008 and 2015. To identify them exactly, phylogenetic analysis was performed by means of the internal transcribed spacer region of ribosomal-DNA sequences from the collected Gymnopus specimens. Among them, G. iocephalus, G. polygrammus, and G. subnudus have not been reported in Korea. A phylogenetic tree and images are provided.

Three Unrecorded Fungal Species from Fecal and Freshwater Samples in Korea

  • Nguyen, Thuong T.T.;Pangging, Monmi;Lee, Hyang Burm
    • 한국균학회지
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    • 제45권4호
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    • pp.304-318
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    • 2017
  • While evaluating fungal diversity in fecal and freshwater samples in Korea, three fungal strains, CNUFC-GHD83-1, CNUFC-RD8126, and CNUFC-YR2-1, were isolated from specific habitats including grasshopper and rat feces, and freshwater samples in Korea. On the basis of the morphological characteristics and phylogenetic analysis of the internal transcribed spacer (ITS) and 28S rDNA, the isolates CNUFC-GHD83-1, CNUFC-RD8126, and CNUFC-YR2-1 were identified as Albifimbria terrestris, Cephaliophora tropica, and Mariannaea aquaticola, respectively. These species have not been previously described in Korea.

Occurrence of Sporendocladia bactrospora on Quercus variabilis in Korea

  • Lee, Dong-Hyeon;Seo, Sang-Tae;Lee, Sang-Hyun;Lee, Seung Kyu;Lee, Sun Keun
    • 한국균학회지
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    • 제45권4호
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    • pp.394-398
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    • 2017
  • A survey to assess the diversity of wound-associated Ophiostomatales and Microascales, the so-called ophiostomatoid fungi, on Korean native trees, was undertaken in 2017. Wounds were artificially created, and a fungus resembling a species of Sporendocladia was consistently isolated from the exposed cambium and inner bark of artificially induced wounds on Quercus variabilis. Morphological examination and DNA sequence comparisons based on the internal transcribed spacer (ITS) and 5.8S regions of the rDNA confirmed the identity of the fungus as Sporendocladia bactrospora. This is the first report on S. bactrospora occurring on Q. variabilis in Korea.

Cytokine-Inducing and T Cell Mitogenic Effects of Cordyceps hepialidicola

  • Lim, Jong-Soon;Kim, Seung-Hyung;Park, Jeong-Youl;Park, Jin-Seo;Park, Seong-Joo;Shin, Kwang-Soo
    • Journal of Microbiology
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    • 제39권3호
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    • pp.181-185
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    • 2001
  • The morphological characteristics of newly isolated Cordyceps hepialidicola were characterized, and the phylogenetic relationships with other Cordyceps species were investigated using a sequence analysis of the internal transcribed spacer (ITS). The PCR product of 592 bp showed a homology of 92 and 91% with C. militaris and C. nutans, respectively, In an in vitro model using mouse peripheral blood mononuclear cells (PBMC), a methanol extract of C. hepialidicola induced multiple cytokines, including IFN-${\gamma}$ IL-4, and IL-18. The extract also enhanced the percentages of the CD4$\^$+/ and CD8$\sub$+/ T cells in the healthy murine PBMCs to 56.1% and 13.0%,respectively. The percentages of CD4$\^$+/ and CD8$\^$+/ in the untreated controls were 28.4 and 7.3%, and concanavalin A-treated positive controls were 62.4 and 18.3%, respectively.

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Four Unrecorded Wood Decay Fungi from Seoul in Korea

  • Jang, Yeong-Seon;Lee, Sung-Wook;Jang, Seok-Yoon;Lim, Young-Woon;Lee, Jin-Sung;Kim, Jae-Jin
    • Mycobiology
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    • 제40권3호
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    • pp.195-201
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    • 2012
  • During the investigation of Korean indigenous fungi from Seoul, three genera-Fuscoporia, Porostereum, and Trametopsis, and four species-Fuscoporia senex, Phlebia acerina, Porostereum spadiceum, and Trametopsis cervina were found. Their morphological characteristics were examined and their identification was confirmed by molecular analysis based on internal transcribed spacer (ITS) and nuclear large subunit ribosomal DNA region sequences. These fungi are new to Korea and registered here with descriptions.

Suppression of Eimeria tenella Sporulation by Disinfectants

  • You, Myung-Jo
    • Parasites, Hosts and Diseases
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    • 제52권4호
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    • pp.435-438
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    • 2014
  • The disinfectant effects (DEs) of 10 types of chemicals, defined by their ability to destroy or inhibit oocysts and consequently prevent sporulation of Eimeria tenella field isolate, were evaluated in vitro. Correct species assignments and sample purities were confirmed by the singular internal transcribed spacer (ITS)-PCR analysis. A total of 18 treatments were performed, and the disinfection suppression levels were 75.9% for 39% benzene + 22% xylene (1:10 dilution), 85.5% for 30% cresol soup (1:1 dilution), and 91.7% for 99.9% acetic acid (1:2 dilution) group. The results indicate that acetic acid, cresol soup, and benzene+xylene are good candidates for suppression of E. tenella oocyst sporulation.

Occurrence of Damping-off Caused by Pythium spinosum on Cucumis melo in Korea

  • Park, Mi-Jeong;Back, Chang-Gi;Han, Kyung-Sook;Park, Jong-Han
    • 식물병연구
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    • 제22권3호
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    • pp.190-193
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    • 2016
  • In 2010 and 2012, damping-off symptoms were found on melon seedlings grown in Yeongam and Suncheon, Korea. Water-soaked and discolored lesions appeared on the lower stems of the infected plants. The diseased plants became wilted and stunted, and eventually collapsed. On the basis of morphological characteristics and molecular analyses of internal transcribed spacer (ITS) rDNA and cytochrome oxidase II (cox2) sequences, the causal organism was identified as Pythium spinosum. The isolates were pathogenic to melon under pot conditions. To our knowledge, this is the first report of P. spinosum causing damping-off on melon in Korea.

Identification of Aspergillus Strain with Antifungal Activity Against Phytophthora Species

  • KANG SUNG WOO;HONG SUK IN;KIM SEUNG WOOK
    • Journal of Microbiology and Biotechnology
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    • 제15권2호
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    • pp.227-233
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    • 2005
  • Fungal strain CGF was isolated from the soil of ChungNam Province, South Korea. Based on the 28S rDNA sequence analysis and the sequence of the internal transcribed spacer (ITS) region of ribosomal DNA, together with morphological and cultural characteristics, this strain was identified as Aspergillus sclerotiorum and renamed Aspergillus sclerotiorum CGF. This is the first strain of Aspergillus sclerotiorum identified in Korea. When the antifungal activity of A. sclerotiorum CGF was evaluated, among the phytopathogenic fungi, mycelial growth of only Phytophthora species was inhibited. Oermination of P. capsid zoospore was also inhibited. The bioactive compound of A. sclerotiorum CGF was highly thermo- and pH-stable.

Four Species of Montagnulaceae Unrecorded in Korea and Isolated from Plant Litter in Freshwater

  • Goh, Jaeduk;Mun, Hye Yeon;Oh, Yoosun;Chung, Namil
    • 한국균학회지
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    • 제44권4호
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    • pp.263-270
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    • 2016
  • Freshwater is a diverse and complex environment for fungi and provides several types of habitat including plant litter, sediment, and carcasses. We collected plant litter from the main stream and branch streams of Nakdong River, Sohancheon in Samcheok, and Geumoreum in Jeju. From several samples of plant litter, we isolated 8 fungal strains belonging to 4 Montagnulaceae species unrecorded in Korea: Paraconiothyrium archidendri, Paraphaeosphaeria sporulosa, Paraphaeosphaeria michotii, and Paraphaeosphaeria viridescens. These fungi were identified by phylogenetic analysis using the internal transcribed spacer (ITS) region and examination of morphological characteristics. Montagnulaceae is known as one of the families in Pleosporales and includes coniothyrium-like fungi. In this study, we described phylogenetic analysis and mycological characteristics of these species, and this is the first report of these taxa in Korea.

First Report of Neopestalotiopsis australis Isolated from Soil in Korea

  • Park, Sangkyu;Lee, Seung-Yeol;Lee, Jae-Jin;Back, Chang-Gi;Ten, Leonid;Lee, Hyang Burm;Jung, Hee-Young
    • 한국균학회지
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    • 제44권4호
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    • pp.360-364
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    • 2016
  • Fungal strain KNU16-005 was isolated from field soil in Jeollabuk-do, Korea. Based on its morphological characteristics and phylogenic analysis using internal transcribed spacer regions of rDNA, ${\beta}$-tubulin and translation elongation factor 1-alpha gene sequences of KNU16-005 were identified as Neopestalotiopsis australis. This species has not been previously reported in Korea.