• Title/Summary/Keyword: Indicator Species Analysis

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Phytoplankton Flora and Community Structure in the Lower Nakdong River (낙동강하류의 식물플랑크톤상과 군집구조)

  • Choi, Chul-Mann;Kim, Won-Il;Lee, Jong-Sik;Jung, Goo-Bok;Lee, Jeong-Taek;Moon, Sung-Gi;Kim, Jin-Ho
    • Korean Journal of Environmental Agriculture
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    • v.26 no.2
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    • pp.159-170
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    • 2007
  • This study was focused on the investigation of the phytoplankton flora and community structure for changing of water environment at the rivers in the lower part of Nakdong river, The samples for this study were collected every month from Jan. 2004 To Dec. 2004. the 196 species belonged to 94 genera were identified during this study periods. The number of species was recorded the maximum 124 taxa in summer and the minimum 69 taxa in winter, We observed the maximum taxa (92 taxa) at the site No. 20 and the minimum taxa (55 taxa) at the site No. 8, respectively. Among the phytoplankton communities, diatoms were dominated over 40% of total phytoplankton groups. Subdominant groups were green algae (over 20% of total phytplankton groups). During this study periods, the 60 species were investigated ecologically significant species (46 cosmopolitic species, 25 pollution indicator, 21 redtide causative species, 8 dominant species, and 7 frequently occurred species). According to the cluster analysis by similarity index, the study sites could be divided into 4 groups.

A Study for Selecting Protected Wildlife Species and Potential Habitats in Seoul Metropolitan City (서울시 보호야생동.식물 종 및 잠재 서식지 선정 연구)

  • Han, Bong-Ho;Lee, Kyong-Jae;Ki, Kyong-Seok;Choi, Byeong-Eon
    • Korean Journal of Environment and Ecology
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    • v.25 no.4
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    • pp.601-613
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    • 2011
  • The purpose of this study is to provide an protected wildlife species and potential habitats in Seoul through the overall present status of the species which live in Seoul. This study was performed in Seoul, the entire area of which is 605.52 $km^2$. We analyzed a total of 57 studies, including academic papers and research reports, for the natural ecology in Seoul. As for the results from the study, it was found that a total 1,907 species from 5 taxa were inhabiting and growing within the area. Among the total, plants of 1,656 species accounted for 86.7%, 197 species of wild birds made up 10.3%, 29 species of amphibians and reptiles consisted of 1.5%, and 27 species of mammalia totaled 1.4%. A total of 440 species except foreign species and species legally preserved by the Ministry of Environment, common species and uncertain species were selected as primary candidates. By taxon, it shows 212 species of plants, 180 species of wild birds, 24 species of mammalia, and 24 species of amphibians and reptiles. For extensive research subjects and research data limited in certain insect family, analysis by literature for discovered insects was excluded. The selection criteria for the second candidate species was based on extinction crisis, rarity, historicity and locality, academic value, habitat specificity, etc. The second candidate species from the primary species were selected through taxon experts' evaluations. As for the results of the selection of the second candidates, a total 77 species were selected through the experts' evaluations. Each species by taxon was 25 species for plants, 21 species for wild birds, 5 for mammalia, 10 for amphibians and reptiles and 16 species for insects. A site investigation for the second candidates was conducted to select the final candidate species. For the target areas, the habitats of the second candidates given by the literature and 46 potential areas in Seoul, which show good natural resistance, were finally selected. From the result of the site investigation, it was found that 14 species of plants, 19 species of wild birds, 2 species of mammalia, 4 species of amphibians and reptiles, and 16 species of insects were actually inhabiting Seoul; thus, the final 55 protected species were selected.

Ecological Comparisons of Stream Conditions Between the Unimpacted and Impacted Sites: Case Study

  • Lee, Jae-Hoon;Lee, Sang-Jae;An, Kwang-Guk
    • Korean Journal of Ecology and Environment
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    • v.41 no.4
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    • pp.441-448
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    • 2008
  • The purpose of this study was to analyze chemical water quality, fish trophic guilds, tolerance indicators, and fish community conditions in the Gap Stream and to compare the stream conditions between the unimpacted site and impacted site. This study was conducted in the physically stable season (May 2008) to minimize physical impacts such as flow and hydrological disturbance, and applied the study in the Gap Stream with two sites of unimpacted upstream site (Unim-S), mainly surrounded by forested area and impacted site (Im-S), influenced by the wastewater disposal plants and industrial complex in the urban region. Chemical data analysis showed that the degree of organic matter pollution, based on BOD, and COD, was $2{\sim}3$ fold greater in the Im-S than the Unim-S, and that TP, as eutrophication indicators, was 4.7 fold greater in the Im-S. Also, $NH_3-N$ was in 8.2 fold greater in the Im-S ($6.25\;mg\;L^{-1}$) than the Unim-S ($0.76\;mg\;L^{-1}$), indicating a massive influence of wastewater from the disposal plant. Similar results were found in other chemical parameters. Thus, chemical impacts in the Im-S were evident, compared to the unimpacted site. Evaluations of tolerant indicator species indicated that sensitive species were dominant in the Unim-S (23.9%) and tolerant species were dominant (97.8%) in the Im-S. Condition factor (CF) was averaged 0.95 ($0.68{\sim}1.18$) in the Unim-S and 1.08 ($0.93{\sim}1.22$) in the Im-S. Fish community in the Unim-S and Im-S was categorized as Zacco-community and Hemibarbus-community, respectively, and the community diversity index (H') was significantly (p<0.05) higher in the Unim-S (0.810) than the Im-S (0.466). Overall, our results suggest that the comparison approach of various chemical and ecological indicators provide important information in identifying multiple stressors in the stream ecosystems.

Biological and Molecular Characterization of a Korean Isolate of Orthotospovirus chrysanthinecrocaulis (Formerly Chrysanthemum Stem Necrosis Virus) Isolated from Chrysanthemum morifolium

  • Seong Hyeon Yoon;Su Bin Lee;Eseul Baek;Ho-Jong Ju;Ju-Yeon Yoon
    • Research in Plant Disease
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    • v.29 no.3
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    • pp.286-294
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    • 2023
  • Biological and molecular characterization of a Korean isolate of Orthotospovirus chrysanthinecrocaulis (formerly known as chrysanthemum stem necrosis virus, CSNV) isolated from Chrysanthemum morifolium was determined using host range and sequence analysis in this study. Twenty-three species of indicator plants inoculated mechanically CSNV-Kr was investigated for determination of host range. CSNV-Kr induced various local and systemic symptoms in the inoculated plant species. CSNV-Kr could not infect three plant species and induced symptomless in systemic leaves in Nicotiana tabacum cultivars, though the plant samples reacted positively with the antiserum to CSNV by double-antibody sandwich-enzyme-linked immunosorbent assay. The complete genome sequence of CSNV-Kr was determined. The L RNA of CSNV-Kr consists of 8,959 nucleotides (nt) and encodes a putative RNA-dependent RNA polymerase. The M RNA of CSNV-Kr consists of 4,835 nt and encodes the movement protein (NSm) and the glycoprotein precursor (Gn/Gc protein). The S RNA of CNSV-Kr consists of 2,836 nt and encodes NSs protein and N protein. The Gn/Gc and N sequence of CSNV-Kr were compared with those of previously published CSNV isolates originating from different countries at nucleotide and amino acid levels. The Gn/GC sequence of CSNV-Kr shared 98.8-99.5% identity with CSNV isolated from other countries and the N sequence of CSNV-Kr shared 98.8-99.6% identity. No particular region of variability could be found in either grouping of viruses. All of the CSNV isolates did not show any relationship according to geographical origins and isolation hosts, suggesting no distinct segregation of the CSNV isolates.

Spatial Analysis of Ecological Characteristics for Benthic Macroinvertebrate Community Structure in Lake Hoengseong Region (횡성호 일대 저서성 대형무척추동물 군집구조의 생태적 특성 분석)

  • Lee, Hwang-Goo;Jung, Sang-Woo;Choi, Jun-Kil
    • Korean Journal of Environment and Ecology
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    • v.26 no.1
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    • pp.46-56
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    • 2012
  • Benthic macroinvertebrates were investigated in Hoeongseong Lake region from March to October 2010, Korea. Macroinvertebrate communities, composition of the functional feeding groups, habitiat oriented groups and the biological water quality were assessed above and below Hoeongseong Dam in the lake region. Six sites, two (St.1~2) above the lake, two (St. 3~4) into the lake, and two (St. 5~6) below the dam, were selected for quantitative (Surber sampler $30cm{\times}30cm$, mesh size 0.2 mm) and qualitative (Hand net) samplings of benthic macroinvertebrates. As a result, a total of 83 species belonging to 43 families, 17 orders, 8 classes, and 5 phyla were recognized. The EPT-group (50 spp. : 60.24%) that is major taxa or EPT-group plus Diptera (61 spp. : 73.49%) occupied most of benthic macroinvertebrates community. Based on quantitative sampling, the number of benthic maroinvertebrates above the lake was 2,399 individuals including 54 species, 28 families, 11 orders, 4 classes, and 4 phyla, whereas 510 individuals including 16 species, 12 families, 7 orders, 4 classes, and 3 phyla in the lake and 626 individuals including 62 species, 33 families, 13 orders, 6 classes, and 4 phyla below the dam were collected respectively. Dominance index was the highest, with 0.82-0.93 ($0.87{\pm}0.05$) in Hoeongseong lake (St. 3-4), diversity index was 3.04-3.16 ($3.10{\pm}0.06$), evenness index was 0.79-0.85 ($0.82{\pm}0.03$), and richness index was 7.27-8.52 ($7.90{\pm}0.63$), which were relatively higher below the dam sites. In the functional feeding groups, collector-gatherers and collector-filterers were the highest in the whole sites, and predators (Micronecta sedula) was appeared highly in the lake. Moreover, swimmers, burrowers, and clingers were considerably occupied in all collecting sites. The result of the DCA, similarity analysis, and MRPP were well reflective of the composition of lake and stream macroinvertebrates. ESB indicate that the lake sites were evaluated heavily polluted under priority improvement waters. Also, Semisulcospira gottschei, Ecdyonurus kibunensis, Epeorus pellucidus, Rhoenanthus coreanus, Stenelmis sp., and Cheumatopsyche brevilineata are considered as an indicator species above and below Hoeongseong Lake, whereas Macrobrachium nipponense and Micronecta sedula are indicated in the lake.

Analysis of Expression Pattern of the Limonoid UDP-glucosyltransferase Gene as an Indicator for Delayed Bitterness from the Citrus Species Endemic in Jeju (재래귤의 성숙시기별 리모노이드 쓴맛 표시자로서 limonoid UDP-glucosyltransferase 발현 분석)

  • Kim, Young-Mee;Lee, Do-Seung;Jeon, Deok-Hyoen;Song, Yeon-Woo;Lee, Dong-Sun;Ryu, Key-Zung;Cho, Moon-Jae;Lee, Dong-Hoon;KimCho, So-Mi
    • Food Science and Preservation
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    • v.18 no.2
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    • pp.184-190
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    • 2011
  • Limonoid UDP-glucosyltransferase (LUGT) is an enzyme that converts limonoids into their corresponding glucosides and ultimately ameliorates limonoid bitterness in Citrus species. In this paper, the LUGT gene was cloned via PCR from 10 Jeju Citrus species. All the deduced glucosyltransferase proteins harbored a highly conserved plant secondary product glucosyltransferase (PSPG) motif within the C terminal region. Phylogenetic analysis based on the amino acid sequence comparison of the LUGT proteins from 10 Citrus species generated three distinct types. The expression patterns of LUGT gene in three representative species from each type were quite different with that of C. unshiu Marc. cv. Miyagawawase(Gungcheon), which his without distinctive juice delayed bitterness. Ourresultssho wth at some Citrus speciessuchas Citrusleiocarpa HORT(Bingul), Citruserythrosa HORT (Dongjunggul), and Citrustachibana TANAKA(Honggul) end emicin Jeju maybe susceptible to intense juice delayed bitterness due to delay inexpression of LUGT.

Ecological Analysis and Environmental Evaluation of Aquatic Insects in Agricultural Ecosystem (농업생태계 내 수서곤충류의 생태분석 및 환경평가)

  • Kim, Jong-Gill;Choi, Young-Cheol;Choi, Ji-Young;Sim, Ha-Sik;Park, Hae-Chul;Kim, Won-Tae;Park, Byung-Do;Lee, Jong-Eun;Kang, Ki-Kyung;Lee, Duck-Bae
    • Korean journal of applied entomology
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    • v.46 no.3
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    • pp.335-341
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    • 2007
  • The main habitats of diving beetles in agricultural ecosystems were identified as ponds, irrigation channels, and reservoirs, where the water system is maintained throughout the year. Four species, Cybister japonicus, Cybister brevis, Hyphydrus japonicus and Noterus angustulus, were selected as biological indicators which can be used to evaluate the healthiness of the agricultural ecosystem. The species number of 4 indicator species, the species number of diving beetle species, and the diversity index were used as factors for environmental evaluation. The evaluation was classified into grades $I{\sim}IV$. The non-fertilizer and non-pesticide agricultural practicing area and the sustainable agricultural practicing area were evaluated as grades $I{\sim}II$, and the general agricultural area to be relatively fine with a grade II. However, the analysis indicated the agricultural areas near a residential area and an industrial complex to be poor with a grade of IV, suggesting that immediate improvement in the agricultural environment is needed.

Vascular plant diversity and vegetation of Yokjido Island in Tongyeong-si, Korea (욕지도(통영시)의 식물다양성과 식생)

  • Kim, Jung-Hyun;Jung, Eun-Hee;Lee, Kyeong-Ui;Nam, Chun-Hee;Park, Sung-Ae;Park, Chan-Ho;Nam, Gi-Heum;Lee, Byoung Yoon;Suh, Min Hwan
    • Korean Journal of Plant Taxonomy
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    • v.46 no.1
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    • pp.83-116
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    • 2016
  • This study was carried out to investigate the flora and vegetation of Yokjido Island in Tongyeong-si, Korea. Vascular plants collected six times (from March of 2015 to January of 2016) were identified as 547 taxa in total, including 113 families, 354 genera, 487 species, four subspecies, 50 varieties, four forms and two hybrids. The first records from this region contained 314 taxa. In the flora of this area, endemic Korean species numbered eight taxa, and the red list of vascular plants according to the IUCN valuation basis numbered six taxa. In addition, 86 taxa of floristic regional indicator plants specially designated by the Ministry of Environment are included. Among the species investigated in this survey, 99 taxa were identified as specific species bio-geographically as compared floras of other terrestrial regions; 97 taxa of plants in southern areas and two taxa of limited distribution plants on the Korean Peninsula. In all, 74 naturalized plants were recorded in the investigated area. Samples of the forest vegetation of Yokjido Island were mainly classified as Pinus thunbergii community and the Alus firma community. Vertical structures of the communities were stable, and a DBH-class analysis showed that the dominant tree species would be maintained. If disturbance factors such as thinning could be halted, the composition of woody species and herbaceous species would change.

Vegetation Classification and Ecological Characteristics of Black Locust (Robinia pseudoacacia L.) Plantations in Gyeongbuk Province, Korea (경북지방 아까시나무 조림지의 식생유형과 생태적 특성)

  • Jae-Soon Song;Hak-Yun Kim;Jun-Soo Kim;Seung-Hwan Oh;Hyun-Je Cho
    • Journal of Korean Society of Forest Science
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    • v.112 no.1
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    • pp.11-22
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    • 2023
  • This study was established to provide basic information necessary for ecological management to restore the naturalness of black locust (Robinia pseudoacacia L.) plantations located in the mountains of Gyeongbuk, Korea. Using vegetation data collected from 200 black locust stands, vegetation types were classified using the TWINSPAN method, the spatial arrangement status according to the environmental gradient was identified through DCA analysis, and a synoptic table of communities was prepared based on the diagnostic species determined by determining community fidelity (Φ) for each vegetation type. The vegetation types were classified into seven types, namely, Quercus mongolica-Polygonatum odoratum var. pluriflorum type, Castanea crenata-Smilax china type, Clematis apiifolia-Lonicera japonica type, Rosa multiflora-Artemisia indica type, Quercus variabilis-Lindera glauca type, Ulmus parvifolia-Celtis sinensis type, and Prunus padus-Celastrus flagellaris type. These types usually reflected differences in complex factors such as altitude, moisture regime, successional stage, and disturbance regime. The mean relative importance value of the constituent species was highest for black locust(39.7), but oaks such as Quercus variabilis, Q. serrata, Q. mongolica, Q. acutissima, and Q. aliena were also identified as important constituent species with high relative importance values, indicating their potential for successional trends. In addition, the total percent cover of constituent species by vegetation type, life form composition, species diversity index, and indicator species were compared.

Evaluation of the Effect of Mine Drainage on the Aquatic Environment by Quantitative Real-time PCR (실시간 정량 중합효소연쇄반응을 이용한 광산 배수의 수계 영향 평가)

  • Han, Ji-Sun;Seo, Jang-Won;Ji, Won-Hyun;Park, Hyun-Sung;Kim, Chang-Gyun
    • Journal of Korean Society of Environmental Engineers
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    • v.32 no.2
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    • pp.121-130
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    • 2010
  • Metals and sulfate can be considerably dissolved at low pH condition in the acid mine drainage(AMD) and it would make an environmental problems. There are only few of acid mine drainage treatment systems in Korea which are operating, but these still have an effect on the surrounding stream. In this study, quantification of indicator microorganisms was conducted to judge the environmental impact of AMD on microflora by quantitative real-time PCR in the drainage samples of four mines and the water samples of each surrounding stream. Two species of iron reducing bacteria(Rhodoferax ferrireducens T118 and Acidiphilium cryptum JF-5) were selected for indicator bacteria based on 16S rRNA cloning analysis, and sulfate reducing bacteria(Desulfosporosinus orientus), iron and sulfur oxidizing bacteria(Acidothiobacillus ferrooxidans) and iron oxidizing bacteria(Leptosprillum ferrooxidans) were included into indicator since these were found in the previous studies on the mining area. Thereafter, the comparative analysis of four mines were established by the microbiological variation index and it was determined that the biological environment effect of AMD is highest in Samtan mine which doesn t contain treatment system by the value.