• Genes and Genomics
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• v.40 no.11
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• pp.1249-1258
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• 2018

The Jeju horse is an indigenous Korean horse breed that is currently registered with the Food and Agriculture Organization of the United Nations. However, there is severe lack of genomic studies on Jeju horse. This study was conducted to investigate genetic characteristics of horses including Jeju horse, Thoroughbred and Jeju crossbred (Jeju${\times}$Thoroughbred) populations. We compared the genomes of three horse populations using the Equine SNP70 Beadchip array. Short-range Linkage disequilibrium was the highest in Thoroughbred, whereas $r^2$ values were lowest in Jeju horse. Expected heterozygosity was the highest in Jeju crossbred (0.351), followed by the Thoroughbred (0.337) and Jeju horse (0.311). The level of inbreeding was slightly higher in Thoroughbred (-0.009) than in Jeju crossbred (-0.035) and Jeju horse (-0.038). $F_{ST}$ value was the highest between Jeju horse and Thoroughbred (0.113), whereas Jeju crossbred and Thoroughbred showed the lowest value (0.031). The genetic relationship was further assessed by principal component analysis, suggesting that Jeju crossbred is more genetically similar to Thoroughbred than Jeju horse population. Additionally, we detected potential selection signatures, for example, in loci located on LCORL/NCAPG and PROP1 genes that are known to influence body. Genome-wide analyses of the three horse populations showed that all the breeds had somewhat a low level of inbreeding within each population. In the population structure analysis, we found that Jeju crossbred was genetically closer to Thoroughbred than Jeju horse. Furthermore, we identified several signatures of selection which might be associated with traits of interest. To our current knowledge, this study is the first genomic research, analyzing genetic relationships of Jeju horse, Thoroughbred and Jeju crossbred.

• Genes and Genomics
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• v.40 no.12
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• pp.1373-1382
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• 2018

Hanwoo and Chikso are classified as Korean native cattle breeds that are currently registered with the Food and Agriculture Organization. However, there is still a lack of genomic studies to compare Hanwoo to Chikso populations. The objective of this study was to perform genome-wide analysis of Hanwoo and Chikso populations, investigating the genetic relationships between these two populations. We genotyped a total of 319 cattle including 214 Hanwoo and 105 Chikso sampled from Gangwon Province Livestock Technology Research Institute, using the Illumina Bovine SNP50K Beadchip. After performing quality control on the initially generated datasets, we assessed linkage disequilibrium patterns for all the possible SNP pairs within 1 Mb apart. Overall, average $r^2$ values in Hanwoo (0.048) were lower than Chikso (0.074) population. The genetic relationship between the populations was further assured by the principal component analysis, exhibiting clear clusters in each of the Hanwoo and Chikso populations, respectively. Overall heterozygosity for Hanwoo (0.359) was slightly higher than Chikso (0.345) and inbreeding coefficient was also a bit higher in Hanwoo (-0.015) than Chikso (-0.035). The average $F_{ST}$ value was 0.036 between Hanwoo and Chikso, indicating little genetic differentiation between those two breeds. Furthermore, we found potential selection signatures including LRP1B and NTRK2 genes that might be implicated with meat and reproductive traits in cattle. In this study, the results showed that both Hanwoo and Chikso populations were not under severe level of inbreeding. Although the principal component analysis exhibited clear clusters in each of the populations, we did not see any clear evidence that those two populations are highly differentiated each other.

• Journal of agriculture & life science
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• v.52 no.6
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• pp.27-36
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• 2018

Recently, the demand for new cultivar of oriental mustard(Brassica juncea) is increased as the consumption of oriental mustard has increased dramatically in the market due to Kimchi is attracting the world's attention. However, absence of seed supply system can cause many problems including inbreeding depression due to self seed production, deterioration of the seed purity and heterogeneity of commercial seed. To establish the $F_1$ variety breeding system of oriental mustard, pure line and inbred lines were screened from inbreeding genetic resources. Male-sterile line was also selected from breeding combinations for the quality improvement of mustard. The combining ability from(Indojasai ${\times}$ Goheungdamyang) combinations and isolation line of(MS910 ${\times}$ Japan red mustard 8 ${\times}$ Ganghwa mustard 9) was highest, thus these lines were selected as parental lines. PCR(Polymerase Chain Reaction) and gene sequence analysis revealed that the genes related to CMS(orf263, orf220, and orf288) were distributed in mitochondria. The isolated lines from this study also showed good performance in yield test and farmhouse prove test.

• Journal of Veterinary Clinics
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• v.16 no.1
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• pp.182-188
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• 1999

This study was performed to determine the causes of the bursting casualties such as death of sows and piglets, abortion, still birth and infertility in a pig farm after consecutive detonation for three months to construct 345 KV in Kimje area. 1. Temperatures in Kimje district, management condition, microorganism in the feed, inbreeding, hematological conditions, and viral agent causing abortion were not proved as the factors of acute occurrence of abortion and infertility in the pig farm. 2. The amount of explosive was increased from 250 kg to 1,100 kg from 23 Dec. 1996 to 28 Jan. 1997 and at the same time the distance between the spot of detonation and the pig farm got closer, from 200 m at the begining to 100 m at the last detonation. 3. Theoretical concussion and sound values were 0.66 kine and 89.39 ㏈, respectively, in the case of 100 m distance between the detonation spot and the pig farm. In conclusion, death of 675 piglets and 11 sows and infertility of 69 sows in the pig farm were assumed to be caused by the concussion or sound stress after detonation.

• Asian-Australasian Journal of Animal Sciences
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• v.22 no.8
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• pp.1102-1106
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• 2009

The Tibetan Mastiff is one of the most archaic, ferocious and the largest dogs in the world. The Kunming dog is the chief working-dog breed in China. In this study, ten microsatellite loci were used to assess the genetic diversity and evolutionary relationships in six dog breeds, including Tibetan Mastiff, Kunming dog, Belgian Malinois, Labrador Retriever, English Springer Spaniel, and German Shepherd. The highest genetic diversity was exhibited by the Tibetan Mastiff, indicating useful protection and little inbreeding in the modern Tibetan Mastiff. Higher genetic diversity was observed in European breeds, supporting the hypotheses that breeders outcross their pure breed dogs occasionally to avoid deleterious effects in Europe. Evolutionary relationships showed that English Springer Spaniel and Labrador Retriever were clustered together, then with the Tibetan Mastiff, consistent with previous cluster results. German Shepherd and Kunming dog were grouped together, coinciding with the breeding history of Kunming dog. It is the first time that Tibetan Mastiff and Kunming dog have been analyzed with microsatellites.

• Journal of Wetlands Research
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• v.18 no.1
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• pp.1-9
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• 2016

Areas around of National Park have been severed eco-corridor of wildlife due to urban expansion and development. Habitats have been fragmented into small pieces. Habitat fragmentation reduces the biodiversity of organisms because the exchange loss and inbreeding of wild fauna and flora. The main cause of the fragmentation of ecological networks in areas around of Moodeungsan National Park are are that the cemetery, cutting of mountain, roads, public parking lots, mountain encroachment by land, urban infrastructure, electric transmission towers, urban area. Area around of National Park must be equipped with ecological networks through an ecological design that can communicate with each other in the national park and urban areas.

• Journal of Life Science
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• v.15 no.1 s.68
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• pp.33-37
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• 2005

Sasa borealis Makino is distributed in East Asia such as Korea, Fushun in China, and Japan. Especially the species is only found in the high altitude (above 600 m) at mountain of cold regions including The Korean Peninsula. The level of genetic diversity and population structure of this species was surveyed using starch gel electrophoresis at putative five enzyme loci from three natural populations in Korea. Results from twelve loci indicated that genetic diversity was low. In addition, analysis of fixation indices revealed a substantial heterozygosity deficiency in some populations and loci. The reasons for the deficit of heterozygosity may be partly considered inbreeding, small population sizes, and mating of demes. S. borealis can reproduce extensively by producing rhizomes and potentially by sexually produced seeds. Rhizomes are generally long, prostate stems rooting at the nodes.

• Asian-Australasian Journal of Animal Sciences
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• v.15 no.7
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• pp.944-948
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• 2002

The aim of this study was to estimate heritability and repeatability for the number of embryos and transferable embryos collected per flush in Holstein population in Hokkaido, Japan. Data consisted of 306 MOET (Multiple Ovulation and Embryo Transfer) treatments on 224 Holstein cows from 1997 to 2000. Variance components for these traits were estimated using the REML procedure. The model included only non-genetic factors that were significant at the 0.05 level, through using generalized linear models, maximum likelihood methods, and stepwise regression procedure as fixed effects and sire and residual for heritabilities, donor and residual for repeatabilities as random effects. The factor identified as important in determining the results was the donor''s estrous condition after superovulation. Heritabilities for the number of embryos and transferable embryos collected per flush were 0.14 and 0.09, respectively. The corresponding repeatabilities were 0.43 and 0.32, respectively. These results show that it was difficult to genetically improve these traits, thus, environmental and physical factors affecting the donor must be improved. These results also show that it is necessary to take the donor''s estrous condition after superovulation and repeatabilities for the number of embryos and transferable embryos collected per flush into account when the genetic gains and inbreeding rates for MOET breeding schemes are predicted by a computer simulation.

• Asian-Australasian Journal of Animal Sciences
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• v.15 no.11
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• pp.1536-1542
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• 2002

The genetic variability of three poultry breeds namely Aseel, Miri and Nicobari taken from different geographical locations of India were evaluated using 15 microsatellite loci. No. of alleles varied from 3 to 9 in Aseel, 3 to 8 in Miri and 2 to 7 in Nicobari. Mean PIC values in Aseel, Miri and Nicobari breeds were 0.64, 0.66 and 0.63, respectively. Average unbiased heterozygosity and direct count heterozygosity were 0.65 and 0.59, 0.68 and 0.61, and 0.64 and 0.57 in Aseel, Miri and Nicobari breeds, respectively. High heterozygosity values revealed in this study are indicative of low level of inbreeding, large population size and no or low selection pressure for commercial trait in all three populations. The estimate of genetic distances using Nei's standard, Nei's minimum and Reynold's distance revealed Aseel and Nicobari to be more closely related than Miri breed of poultry.

• Asian-Australasian Journal of Animal Sciences
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• v.18 no.7
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• pp.915-921
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• 2005

Genetic variation at 25 microsatellite loci, population structure, and genetic bottleneck hypothesis were examined for Ankleshwar poultry population found in Gujrat, India. The estimates of genetic variability such as effective number of alleles and gene diversities revealed substantial genetic variation frequently displayed by microsatellite markers. The average polymorphism across the studied loci and the expected gene diversity in the population were 6.44 and 0.670${\pm}$0.144, respectively. The population was observed to be significantly differentiated into different groups, and showed fairly high level of inbreeding (f = 0.240${\pm}$0.052) and global heterozygote deficit. The bottleneck analysis indicated the absence of genetic bottleneck in the past. The study revealed that the Ankleshwar poultry breed needs appropriate genetic management for its conservation and improvement. The information generated in this study may further be utilized for studying differentiation and relationships among different Indian poultry breeds.