• 한국조사연구학회지:조사연구
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• 제11권1호
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• pp.1-18
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• 2010

본 논문에서는 패널조사에서 발생하는 웨이브 무응답을 대체하는 방법을 고찰하였다. 패널조사에서는 이전 조사 데이터를 무응답 대체에 활용할 수 있기 때문에 이러한 성질을 이용하면 횡단면 무응답 대체보다 더 효과적인 웨이브 무응답 대체법을 찾을 수 있다. 먼저 웨이브 무응답 대체를 사용하는 해외의 주요 패널조사를 살펴보고, 웨이브 무응답 대체방법 중 종단면 회귀대체법, 이월대체법, 최근방 회귀대체법, 그리고 행렬대체법을 고찰하였다. 그리고 웨이브 무응답 대체법의 성능을 비교하기 위하여 한국복지패널 데이터를 대상으로 모의실험을 실시하였다. 성능을 비교하기 위하여 평균대체, 회귀대체, 비대체, 최근방 대체, 핫덱 대체를 고려하였고 성능평가 지표로는 예측 정확성 지표와 추정 정확성 지표를 이용하였다. 모의실험 결과 비대체, 행렬대체는 두 지표 모두 우수했고, 회귀대체, 종단면 회귀대체, 이월대체는 예측 정확성은 우수한 반면 추정 정확성은 다소 떨어졌으며, 반대로 최근방 회귀대체, 최근방 대체, 핫덱 대체는 예측 정확성은 떨어지나 추정 정확성은 높은 것으로 나타났다. 마지막으로 평균 대체는 두 지표 모두 좋지 않았다.

• Asian-Australasian Journal of Animal Sciences
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• 제29권4호
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• pp.464-470
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• 2016

The objective of this study was to investigate the accuracy of imputation from low density (LDC) to moderate density SNP chips (MDC) in a Thai Holstein-Other multibreed dairy cattle population. Dairy cattle with complete pedigree information (n = 1,244) from 145 dairy farms were genotyped with GeneSeek GGP20K (n = 570), GGP26K (n = 540) and GGP80K (n = 134) chips. After checking for single nucleotide polymorphism (SNP) quality, 17,779 SNP markers in common between the GGP20K, GGP26K, and GGP80K were used to represent MDC. Animals were divided into two groups, a reference group (n = 912) and a test group (n = 332). The SNP markers chosen for the test group were those located in positions corresponding to GeneSeek GGP9K (n = 7,652). The LDC to MDC genotype imputation was carried out using three different software packages, namely Beagle 3.3 (population-based algorithm), FImpute 2.2 (combined family- and population-based algorithms) and Findhap 4 (combined family- and population-based algorithms). Imputation accuracies within and across chromosomes were calculated as ratios of correctly imputed SNP markers to overall imputed SNP markers. Imputation accuracy for the three software packages ranged from 76.79% to 93.94%. FImpute had higher imputation accuracy (93.94%) than Findhap (84.64%) and Beagle (76.79%). Imputation accuracies were similar and consistent across chromosomes for FImpute, but not for Findhap and Beagle. Most chromosomes that showed either high (73%) or low (80%) imputation accuracies were the same chromosomes that had above and below average linkage disequilibrium (LD; defined here as the correlation between pairs of adjacent SNP within chromosomes less than or equal to 1 Mb apart). Results indicated that FImpute was more suitable than Findhap and Beagle for genotype imputation in this Thai multibreed population. Perhaps additional increments in imputation accuracy could be achieved by increasing the completeness of pedigree information.

• 대한산업공학회지
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• 제38권4호
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• pp.276-284
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• 2012

Classification algorithms generally assume that the data is complete. However, missing values are common in real data sets due to various reasons. In this paper, we propose to use locally linear reconstruction (LLR) for missing value imputation to improve the classification performance when missing values exist. We first investigate how much missing values degenerate the classification performance with regard to various missing ratios. Then, we compare the proposed missing value imputation (LLR) with three well-known single imputation methods over three different classifiers using eight data sets. The experimental results showed that (1) any imputation methods, although some of them are very simple, helped to improve the classification accuracy; (2) among the imputation methods, the proposed LLR imputation was the most effective over all missing ratios, and (3) when the missing ratio is relatively high, LLR was outstanding and its classification accuracy was as high as the classification accuracy derived from the compete data set.

• Communications for Statistical Applications and Methods
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• 제30권6호
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• pp.577-587
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• 2023

Conventional categorical data imputation techniques, such as mode imputation, often encounter issues related to overestimation. If the variable has too many categories, multinomial logistic regression imputation method may be impossible due to computational limitations. To rectify these limitations, we propose a two-stage imputation method. During the first stage, we utilize the Boruta variable selection method on the complete dataset to identify significant variables for the target categorical variable. Then, in the second stage, we use the important variables for the target categorical variable for logistic regression to impute missing data in binary variables, polytomous regression to impute missing data in categorical variables, and predictive mean matching to impute missing data in quantitative variables. Through analysis of both asymmetric and non-normal simulated and real data, we demonstrate that the two-stage imputation method outperforms imputation methods lacking variable selection, as evidenced by accuracy measures. During the analysis of real survey data, we also demonstrate that our suggested two-stage imputation method surpasses the current imputation approach in terms of accuracy.

• Journal of Animal Science and Technology
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• 제63권6호
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• pp.1232-1246
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• 2021

Recently, the cattle genome sequence has been completed, followed by developing a commercial single nucleotide polymorphism (SNP) chip panel in the animal genome industry. In order to increase statistical power for detecting quantitative trait locus (QTL), a number of animals should be genotyped. However, a high-density chip for many animals would be increasing the genotyping cost. Therefore, statistical inference of genotype imputation (low-density chip to high-density) will be useful in the animal industry. The purpose of this study is to investigate the effect of the reference population size and marker density on the imputation accuracy and to suggest the appropriate number of reference population sets for the imputation in Hanwoo cattle. A total of 3,821 Hanwoo cattle were divided into reference and validation populations. The reference sets consisted of 50k (38,916) marker data and different population sizes (500, 1,000, 1,500, 2,000, and 3,600). The validation sets consisted of four validation sets (Total 889) and the different marker density (5k [5,000], 10k [10,000], and 15k [15,000]). The accuracy of imputation was calculated by direct comparison of the true genotype and the imputed genotype. In conclusion, when the lowest marker density (5k) was used in the validation set, according to the reference population size, the imputation accuracy was 0.793 to 0.929. On the other hand, when the highest marker density (15k), according to the reference population size, the imputation accuracy was 0.904 to 0.967. Moreover, the reference population size should be more than 1,000 to obtain at least 88% imputation accuracy in Hanwoo cattle.

• Journal of Animal Science and Technology
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• 제58권1호
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• pp.1.1-1.6
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• 2016

Background: Genotype imputation is an important process of predicting unknown genotypes, which uses reference population with dense genotypes to predict missing genotypes for both human and animal genetic variations at a low cost. Machine learning methods specially boosting methods have been used in genetic studies to explore the underlying genetic profile of disease and build models capable of predicting missing values of a marker. Methods: In this study strategies and factors affecting the imputation accuracy of parent-offspring trios compared from lower-density SNP panels (5 K) to high density (10 K) SNP panel using three different Boosting methods namely TotalBoost (TB), LogitBoost (LB) and AdaBoost (AB). The methods employed using simulated data to impute the un-typed SNPs in parent-offspring trios. Four different datasets of G1 (100 trios with 5 k SNPs), G2 (100 trios with 10 k SNPs), G3 (500 trios with 5 k SNPs), and G4 (500 trio with 10 k SNPs) were simulated. In four datasets all parents were genotyped completely, and offspring genotyped with a lower density panel. Results: Comparison of the three methods for imputation showed that the LB outperformed AB and TB for imputation accuracy. The time of computation were different between methods. The AB was the fastest algorithm. The higher SNP densities resulted the increase of the accuracy of imputation. Larger trios (i.e. 500) was better for performance of LB and TB. Conclusions: The conclusion is that the three methods do well in terms of imputation accuracy also the dense chip is recommended for imputation of parent-offspring trios.

• 응용통계연구
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• 제21권1호
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• pp.95-107
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• 2008

농촌생활지표조사는 2000년부터 농촌자원개발연구소에서 매년 실시하는 조사로서 통계청 승인통계이다. 본 연구에서는 2005년 농촌생활지표조사에 사용된 원자료를 이용하였다. 원자료에 대한 에디팅 과정을 거친 후 무응답이 포함된 개체를 제거하여 얻어진 1,582 가구를 대 상으로 하였으며 총 146문항 중에서 최종 선택되어진 15문항을 증심으로 무응답 대체를 실시하였다. 실험에 사용된 대체법과 각 대체법의 효율성은 자료의 종류에 따라 다르게 적용되었다. 먼저 연속형 자료에 대해서는 평균대체, 회귀대체, 수정된 그레이 기반 k-NN 대체(DU, DW, WU, WW) 방법을 사용하여 무응답을 대체하고 RMSB를 이용하여 실험결과를 비교하였으며, 범주형 자료에 대해서는 최빈값 이용, 확률 대체, 조건부 최빈간 이용, 조건부 학률 대체, 단순 임의 핫덱 대체 방법을 사용하여 무응답을 대체하고 정확도(Accuracy)를 이용하여 실험 결과를 비교하였다. 실험 결과에 의하면 연속형 자료에 대해서는 회귀대체 또는 그레이 기반 k-NN 대체가 적절하고, 범주형 자료에 대해서는 핫덱 대체가 가장 적절한 것으로 나타났다.

• Journal of the Korean Data and Information Science Society
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• 제14권2호
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• pp.143-152
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• 2003

A data set having missing observations is often completed by using imputed values. In this paper, performances and accuracy of five imputation procedures are evaluated when missing values exist only on the response variable in the exponential regression model. Our simulation results show that adjusted exponential regression imputation procedure can be well used to compensate for missing data, in particular, compared to other imputation procedures. An illustrative example using real data is provided.

• 한국데이터정보과학회:학술대회논문집
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• 한국데이터정보과학회 2003년도 춘계학술대회
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• pp.135-144
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• 2003

A data set having missing observations is often completed by using imputed values. In this paper, performances and accuracy of five imputation procedures are evaluated when missing values exist only on the response variable in the exponential regression model. Our simulation results show that adjusted exponential regression imputation procedure can be well used to compensate for missing data, in particular, compared to other imputation procedures. An illustrative example using real data is provided.

• 한국통계학회:학술대회논문집
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• 한국통계학회 2001년도 추계학술발표회 논문집
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• pp.143-148
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• 2001

A dataset having missing observations is often completed by using imputed values. In this paper the performances and accuracy of complete case methods and four imputation procedures are evaluated when missing values exist only on the response variables in the Weibull regression model. Our simulation results show that compared to other imputation procedures, in particular, hotdeck and Weibull regression imputation procedure can be well used to compensate for missing data. In addition an illustrative real data is given.