• Ocean and Polar Research
• /
• 제42권3호
• /
• pp.263-270
• /
• 2020

The distribution and genotypes of the sea nettle Chrysaora pacifica have been reported in the South Sea of Korea; however, little research work has been attempted in the East Sea. Here, we collected similar jellyfishes from the East Sea coasts (Goseong, Yangyang and Sokcho), and identified them to the sea nettle morphologically. In addition, the genotypes of these sea nettle were compared with those from the South Sea (Tongyeong and Geoje). Phylogenetic analysis by using the mitochondrial COI sequences showed that the genus Chrysaora was clearly separated from other taxa to be formed a monophyletic group, with each species distinctly separated. C. pacifica in the East and South Seas was separated geographically by the COI phylogeography, representing potentially different populations. The COI gene of the Korean C. pacifica had approximately 7 times more genetic variation than the nuclear ITS rDNA, and thus it might be considered as a useful marker for genetic analysis of the jellyfish population.

• 한국균학회지
• /
• 제47권4호
• /
• pp.319-328
• /
• 2019

2018년 6월, 전남 장흥군 약초재배사에 재배중인 부처손(Selaginella tamariscina), 산비장이(Serratula coronata ssp. insularis), 황금(Scutellaria baicalensis), 현삼(Scrophularia buergeriana) 등 4종의 약용식물로부터 병 감염 증후가 보이는 잎을 채집하였다. 채집된 잎으로부터 국내 미기록 진균 4종(Paraboeremia selaginellae, Colletotrichum camelliae, Alternaria eichhorniae, Phomopsis capsica)을 분리 동정하여 이들의 형태학적인 특성과 분자생물학적 특성을 기술하였다.

• The Plant Pathology Journal
• /
• 제25권3호
• /
• pp.294-298
• /
• 2009

Stem canker symptoms were observed in a rape field in Muan, Korea during a disease survey in May 2006. A total of 15 isolates of Phoma sp. were obtained from the infected stems of the plant. All isolates were identified as Leptosphaeria biglobosa based on their morphological and cultural characteristics. The Korean isolates of L. biglobosa were assigned to 'brassicae' among six subclades of L. biglobosa complex based on the entire ITS sequences of rDNA. Pathogenicity of the fungal isolates was confirmed on leaves and stems of rape by artificial inoculation. This is the first report that Leptosphaeria biglobosa causes stem canker of rape in Korea.

• Mycobiology
• /
• 제47권4호
• /
• pp.355-367
• /
• 2019

Arthonia dokdoensis sp. nov., a lichenicolous fungus from the subcosmopolitan Arthonia molendoi complex growing on crustose thalli of species of the genus Orientophila (subfamily Xanthorioideae, Teloschistaceae), as well as the lichen species Rufoplaca toktoana sp. nov. (subfamily Caloplacoideae, Teloschistaceae) similar to Rufoplaca kaernefeltiana, both from Dokdo Islands, Republic of Korea, are described, illustrated, and compared with closely related taxa. In the phylogenetic tree of the Arthoniaceae based on 12S mtSSU and RPB2 gene sequences, the phylogenetic position of the A. dokdoensis and the relationship with the A. molendoi group are illustrated, while the position of the newly described R. toktoana is confirmed by phylogenetic tree based on ITS nrDNA data.

• Journal of Microbiology and Biotechnology
• /
• 제20권12호
• /
• pp.1672-1676
• /
• 2010

The Actinomycete strain KH29 is antagonistic to the multidrug-resistant Acinetobacter baumannii. Based on the diaminopimelic acid (DAP) type, and the morphological and physiological characteristics observed through the use of scanning electron microscopy (SEM), KH29 was confirmed as belonging to the genus Streptomyces. By way of its noted 16S rDNA nucleotide sequences, KH29 was found to have a relationship with Streptomyces cinnamonensis. The production of an antibiotic from this strain was found to be most favorable when cultured with glucose, polypeptone, and yeast extract (PY) medium for 6 days at $27^{\circ}C$. The antibiotic produced was identified, through comparisons with reported spectral data including MS and NMR as a cyclo(L-tryptophanyl-L-tryptophanyl). Cyclo(L-Trp-L-Trp), from the PY cultures of KH29, was seen to be highly effective against 41 of 49 multidrug-resistant Acinetobacter baumannii. Furthermore, cyclo(L-Trp-L-Trp) had antimicrobial activity against Bacillus subtilis, Micrococcus luteus, Staphylococcus aureus, Saccharomyces cerevisiae, Aspergillus niger, and Candida albicans, However, it was ineffective against Streptomyces murinus.

• 한국균학회지
• /
• 제48권2호
• /
• pp.87-93
• /
• 2020

A fungal strain designated KNU-WDM2A2 was isolated from mosquitoes in Gimcheon, Korea. The pure culture was transferred to potato dextrose agar (PDA) and synthetic nutrient agar (SNA) media and attained a diameter of 90 mm after 10 days of incubation at 25℃. The colonies were whitish to light pink and cottony to wooly, with an abundant production of aerial mycelia. The strain produced hyaline to slightly yellowish conidiophores that were rough-walled and branched, with conidiogenous cells arising terminally or laterally. Conidia were unicellular, hyaline to light brown, smooth, and oval or ovoid to clavate, with a size of 4.1-6.9×2.5-3.3 ㎛ (n=65). A phylogenetic analysis was conducted using the internal transcribed spacer (ITS) regions and 28S rDNA of large subunit (LSU) sequences, to support the cultural and morphological characteristics. The KNU-WDM2A2 strain was identified here as Biscogniauxia petrensis, new to Korea.

• The Plant Pathology Journal
• /
• 제27권1호
• /
• pp.85-88
• /
• 2011

Podosphaera fusca (syn. Sphaerotheca fusca, S. fuliginea) is a causal agent of powdery mildew infections on Zinnia elegans, and has been documented in Korea since 1967. An outbreak involving about 1,000 plants in October 2008, in Yangpyeong, Korea, was caused by Golovinomyces cichoracearum. Further surveys of zinnia powdery mildew from 2008-2010 confirmed the widespread occurrence of Zinnia-Golovinomyces association in Korea. Chasmothecia of this fungus have not been found on Z. elegans in Korea. Analysis of internal transcribed spacer rDNA from five Korean collections confirmed the powdery mildew as G. cichoracearum. Comparison with the those from GenBank revealed 100% identity with sequences from zinnia powdery mildew, forming a monophyletic clade with 100% bootstrap support, and with those of G. cichoracearum parasitic on the hosts belonging to the tribe Heliantheae of the family Asteraceae.

• Mycobiology
• /
• 제47권1호
• /
• pp.66-75
• /
• 2019

A new species of Alternaria causing leaf spots on the rubber tree (Hevea brasiliensis) in Yunnan, China, was isolated, examined, and illustrated. Morphologically, it belongs to the section Porri of Alternaria, which produces relatively large conidia and a simple or branched, filamentous long beak. It is, however, characterized by conidiophores gradually enlarging near the apex into a clavate conidiogenous cell and long ellipsoid to obclavate, smoothwalled conidia with a long filamentous beak. Molecular phylogenetic analyses based on ITS rDNA, GAPDH, and TEF1-alpha sequences demonstrate that the phytopathogen falls in the clade of the section Porri, being most closely related to A. sidae, A. sennae, A. deseriticola, A. cyamopsidis, A. rostellata, A. nitrimali, A. crassa, and A. thunbergiae.

• 식물병연구
• /
• 제30권1호
• /
• pp.88-94
• /
• 2024

In July 2021, symptoms of soft rot were observed on the stems of Ficus carica in Yeongam, Jeollanamdo, Korea. To accurately diagnose the cause, infected stem was collected and bacterial strain was isolated. Among these, the pathogenic strain KNUB-08-21 was identified as Pectobacterium aroidearum through 16S rRNA gene sequencing and phylogenetic analysis based on the concatenated sequences of the dnaX, leuS, and recA genes. The affiliation of the isolate with this bacterial species was also confirmed by its biochemical characteristics obtained using API ID 32 GN system. Artificial inoculation confirmed the strain's pathogenicity in figs, causing significant damage to both stems and fruits. To our knowledge, this is the first report of P. aroidearum causing soft rot disease in F. carica in Korea.

• Journal of Microbiology and Biotechnology
• /
• 제23권4호
• /
• pp.459-466
• /
• 2013

The lactic acid bacterium Streptococcus thermophilus is widely used as a starter culture for the production of dairy products. Whole-genome sequencing is expected to utilize the genetic basis behind the metabolic functioning of lactic acid bacterium (LAB), for development of their use in biotechnological and probiotic applications. We sequenced the whole genome of Streptococcus thermophilus MTCC 5461, the strain isolated from a curd source, by 454 GS-FLX titanium and Ion Torrent PGM. We performed comparative genome analysis using the local BLAST and RDP for 16S rDNA comparison and by the RAST server for functional comparison against the published genome sequence of Streptococcus thermophilus CNRZ 1066. The whole genome size of S. thermophilus MTCC 5461 is of 1.73Mb size with a GC content of 39.3%. Streptococcal virulence-related genes are either inactivated or absent in the strain. The genome possesses coding sequences for features important for a probiotic organism such as adhesion, acid tolerance, bacteriocin production, and lactose utilization, which was found to be conserved among the strains MTCC 5461 and CNRZ 1066. Biochemical analysis revealed the utilization of 17 sugars by the bacterium, where the presence of genes encoding enzymes involved in metabolism for 16 of these 17 sugars were confirmed in the genome. This study supports the facts that the strain MTCC 5461 is nonpathogenic and harbors essential features that can be exploited for its probiotic potential.