• 제목/요약/키워드: ITS marker

검색결과 851건 처리시간 0.026초

DNA 바코드 분석을 통한 소계(小薊) 및 대계(大薊) 기원식물 감별과 종간 유연관계 분석 (Molecular Authentication and Phylogenetic Analysis of Plant Species for Breeae and Cirsii Herba based on DNA barcodes)

  • 문병철;이영미;지윤의;최고야;천진미;김호경
    • 대한본초학회지
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    • 제28권3호
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    • pp.75-84
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    • 2013
  • Objectives : The origin of Breeae Herba (So-gye) and Cirsii Herba (Dae-gye) is differently prescribed in Korean and Chinese modern pharmacopoeia. Since the similar morphological characteristics and chaotic plant names, moreover, the aerial part of Carduus crispus have been used as the Cirsii Herba. To develop a reliable method for correct identification of these herbal medicines and to evaluate the genetic relationship of these closely related plant species, we analyzed sequences of DNA barcode regions. Methods : Thirty-one samples of 6 medicinal plants (B. segeta, B. setosa, C. japonicum var. maackii, C. setidens, C. chanroenicum, and C. crispus) were collected from different habitate and nucleotide sequences of DNA barcode regions (rDNA-ITS, matK, and rbcL) were analyzed after amplification using appropriate primers reported in previous studies. The nucleotides of species-specific authentic marker and phylogenetic relations were estimated based on the entire sequences of DNA barcodes by the analysis of ClastalW and UPGMA, respectively. Results : In comparative analysis of DNA barcode sequences, we obtained specific nucleotides to discriminate the medicinal plant of Breeae/Cirsii Herba in species level and evaluated the phylogenetic relationship of these species. Futhermore, we identified distinct marker nucleotides enough to authenticate respective species. These sequence differences at corresponding positions were avaliable genetic markers to determine the botanical origins of Breeae Herbal as well as Cirsii Herba. Conclusions : These marker nucleotides would be useful to identify the official herbal medicines by providing of definitive information that can identify each plant species and distinguish from unauthentic adulterants and substitutes.

Genetic identification of Sinomenium acutum based on chloroplast gene ndhF sequences

  • Ryuk, Jin Ah;Lee, Hye Won;Ko, Byoung Seob
    • 대한본초학회지
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    • 제28권5호
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    • pp.1-6
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    • 2013
  • Objectives : This study was conducted to identify the original Sinomini Caulis et Rhizoma plant among Stephania tetrandra, Cocculus trilobus, and Aristolochiae fangchi to develop the genetic marker for Sinomini Caulis et Rhizoma. Methods : Sinomenium acutum was identified by the classification and identification committee of the National Center for Standardization of Herbal Medicines. The chloroplast ndhF gene was amplified. We performed sequences alignment analysis of Sinomenium acutum, Stephania tetrandra, C. trilobus, and A. fangchi using BioEdit program. The SFR markers designed were consisted of SF01, SR04, and SR05 primers. Results : Many variations of Sinomeni Caulis et Rhizoma are currently commercialized as herbal medicine. We compared the base sequences of the ndhF intergenic space of chloroplast DNA with Sinomenium acutum, Stephania tetrandra, C. trilobus, and A. fangchi. According to the results, it showed that the nucleotide variations were seen in 30 genes of four species. Phylogenetic analysis revealed that 4 species were classified into five groups based on an inter-group divergence in nucleotide sequence of 9%. We developed SFR marker nucleotides enough to authenticate respective species and confirmed its application on the band size at 419 base pair. These sequence differences at corresponding positions were available genetic markers to identity the Sinomeni Caulis et Rhizoma. Conclusions : Base on these results, the ndhF region was effective in distinguishing Sinomini Caulis et Rhizoma The SFR genetic marker was useful for identifying Sinomini Caulis et Rhizoma with other species.

Automatic Reading System for On-off Type DNA Chip

  • Ryu, Mun-Ho;Kim, Jong-Dae;Kim, Jong-Won
    • Journal of Information Processing Systems
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    • 제2권3호
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    • pp.189-193
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    • 2006
  • In this study we propose an automatic reading system for diagnostic DNA chips. We define a general specification for an automatic reading system and propose a possible implementation method. The proposed system performs the whole reading process automatically without any user intervention, covering image acquisition, image analysis, and report generation. We applied the system for the automatic report generation of a commercialized DNA chip for cervical cancer detection. The fluorescence image of the hybridization result was acquired with a $GenePix^{TM}$ scanner using its library running in HTML pages. The processing of the acquired image and the report generation were executed by a component object module programmed with Microsoft Visual C++ 6.0. To generate the report document, we made an HWP 2002 document template with marker strings that were supposed to be searched and replaced with the corresponding information such as patient information and diagnosis results. The proposed system generates the report document by reading the template and changing the marker strings with the resultant contents. The system is expected to facilitate the usage of a diagnostic DNA chip for mass screening by the automation of a conventional manual reading process, shortening its processing time, and quantifying the reading criteria.

Induction of Quinone Reductase and Glutathione S-Transferase in Murine Hepatoma Cells by Flavonoid Glycosides

  • Kim, Jung-Hyun;Lee, Jeong-Soon;Kim, Young-Chan;Chung, Shin-Kyo;Kwon, Chong-Suk;Kim, Young-Kyoon;Kim, Jong-Sang
    • Preventive Nutrition and Food Science
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    • 제8권4호
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    • pp.365-371
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    • 2003
  • The potential of seven flavonoid glycosides to induce quinone reductase (QR), an anticarcinogenic marker enzyme, in murine hepatoma cells (hepalc1c7) and its mutant cells (BPRc1) was evaluated. Among test compounds, kaempferol-3-O-glucoside, luteolin-6-c-glucoside, and quercetin-3-O-glucoside (Q-3-G) induced QR in hepalc1c7 cells in a dose-dependent manner. However, in BPRc1 cells lacking arylhydrocarbon receptor nuclear translocator (ARNT), only Q-3-G caused a significant induction of quinone reductase at the concentration range of 0.5 to 8 ug/mL, suggesting that it is a monofunctional inducer. Q-3-G induced not only phase 2 enzymes, including QR and glutathione-S-transferase, but also nitroblue tetrazolium reduction activity in HL-60 cells, a biochemical marker for cell differentiation promoting agents. In conclusion, Q-3-G merits further study to evaluate its cancer chemopreventive potential.

RFLP Analysis of the mtDNA COI Region in Four Abalone Species

  • Park, Choul-Ji;Kijima, Akihiro
    • Fisheries and Aquatic Sciences
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    • 제9권3호
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    • pp.101-106
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    • 2006
  • The cytochrome c oxidase subunit I (COI) gene region of mitochondrial DNA (mtDNA) was examined in four abalone species to estimate its utility as a genetic marker using restriction fragment length polymorphism (RFLP) analysis. The utility was evaluated in terms of genetic divergence and relationships among Haliotis discus hannai, H. rufescens, H. rubra, and H. midae in both hemispheres of the world. There was clear genetic divergence in the mtDNA COI region between all pairs of the four species. Moreover, relationships among the abalone species were reflected in their geographical distributions and morphological characteristics. Therefore, RFLP analysis of the mtDNA COI region is a suitable genetic marker for the estimation of genetic divergence and relationships among abalone species. However, it is not effective for the evaluation of genetic differences within abalone species.

수치시뮬레이션에 의한 공기부양선 주위의 유동장해석과 조파저항계산 (Numerical Analysis on Flow Fields and the Calculation of Wave Making Resistance about Air Supported Ships)

  • 나영인;이영길
    • 한국전산유체공학회지
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    • 제1권1호
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    • pp.55-63
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    • 1996
  • Numerical computations are carried out to analyze the characteristics of flow fields around Air Supported Ships. The computations are performed in a rectangular grid system based on MAC(Marker And Cell) method. The governing equations are represented in finite difference forms by forward differencing in time and centered differencing in space except for its convection terms. For the certification of this numerical analysis method, the computations of flow fields around a Catamaran, an ACV(Air Cushion Vehicle) modeled with pressure distribution on free surface and two SES(Surface Effect Ship)'s are carried out, The results of the present computations are compared with the previously presented computational and experimental results in the same condition.

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‘-은/는’의 분포에 대하여 (On the Distribution of‘-(N)un’in Korean)

  • 염재일
    • 한국언어정보학회지:언어와정보
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    • 제5권2호
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    • pp.57-74
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    • 2001
  • In this paper, I propose syntactic, semantic and pragmatic restrictions on the distribution of the contrastive topic marker‘-(n)un’in Korean. A contrastive topic is associated with another focus. The association with focus is subject to syntactic islands. On the other hand, there is no syntactic restriction between a phrase attached with‘-(n)un’and a focused expression within the ‘-(n)un’phrase itself. In this area there is a semantic requirement that the alternatives generated by a focused expression be maintained up to the phrase attached with‘-(n)un’. Finally, when‘-(n)un’is used in an embedded clause, the whole sentence becomes natural when the contrastive topic introduced by‘-(n)un’and its alternative contrastive topic, which is presupposed by the contrastive topic marker, jointly constitute a more complex topic which is related to the whole context. And exclusiveness facilitates the formation of the whole complex context.

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자근의 성분 분리 및 이들 성분의 HPLC-UV 동시분석법 개발 (Isolation of Constituents of Lihtospermum erythrorhizon and Development of an Analytical Method of its Constituents by HPLC-UV)

  • 홍은영;경민지;황완균
    • 약학회지
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    • 제59권5호
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    • pp.222-229
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    • 2015
  • Lithospermi radix, the dried roots of Litospermum erythrorhizon Sieboid et Zuccarini (Boraginaceae), has long been used to treat detoxification and inflammation. In this study, we isolated two main quinoid compounds, ${\beta}$-hydroxyisovalerylshikonin (1) and acetylshikonin (2) from L. erythrorhizon. As acetylshikonin is considered as a marker compound of L. erythrorhizon, a rapid analysis method for the simultaneous determination of quinoid compounds including 2 was also developed by HPLC (High Performance Liquid Chromatography) and validation of this analytical method. By the developed method, two quinoid marker compounds (${\beta}$-hydroxyisovalerylshikonin and acetylshikonin) were successfully quantified in 31 commercial samples which were collected from different regions. The contents were 0.20% (${\beta}$-hydroxyisovalerylshikonin) and 0.22% (acetylshikonin), respectively.

중국어(中國語)의 복수(複數) 표현법(表現法)과 원대(元代) 상용(常用) 복수표지(複數標志) '매(每)'이 어법화(語法化) 연구(硏究) - 《충의직언(忠義直言)》을 중심으로

  • 이태수
    • 중국학논총
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    • 제61호
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    • pp.49-75
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    • 2019
  • Three types of plural forms are discovered in the ancient literature 《Chung-ui-jig-eon》: propositional plural markers placed in front of the main word - either noun or pronoun, postpositional plural markers placed behind the main word, and pro-/postpositional mixed plural markers. The Mongolian Rule in China during Yuan Dynasty caused the osmotic linguistic imperialism of the Mongolian over the Chinese language. Mongolian language - an Altaiian language which is postpositional - dominantly influenced the Chinese language - which is a propositional language. In addition, the previous usage of '輩', '等', '伟', '满' in Ancient Chinese, made it easier for '每' to be accepted and grammaticalized as a plural marker. The grammaticalization of '每' had been progressed through the reinterpretation of '每' in the structure of 'S(NP)+每+VP'. As a result, '每' had started to be widely used as a postpositional plural ending behind noun or pronoun, regardless of its position in the sentence.