• 제목/요약/키워드: ITS marker

검색결과 847건 처리시간 0.022초

RAPD PCR에 의한 GM벼의 야생 근연종 벼로의 유전자 전이 분석법 (The Investigation of Gene Flows in Artificial Pollination between GM Rice and its Wild Relatives by RAPD Analysis)

  • 김윤식;김현순;정혁;전재흥
    • 한국자원식물학회지
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    • 제19권5호
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    • pp.612-616
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    • 2006
  • 최근 GMO 작물의 재배, 생산이 날로 늘어나며 GMO 작물이 환경에 미칠 수 있는 많은 가능성들이 대두되고 있다. 특히 GMO 작물과 야생종과의 자연교잡에 의한 유전자 전이로, 잡초화의 문제점이 제기되며 생태계의 변화 및 파괴의 위험성이 우려되고 있다. 본 실험에서는 GM벼와 야생 및 근연종 사이의 교잡가능성 및 유전자 전이율을 조사하기 위한 유전자 이동의 분석 체계를 확립하고자 하였다. 벼의 개화시기에 GM벼와 야생 및 근연종 간의 인공교배 후 수확한 교잡 추정 종자를 발아시켜서 제초제를 처리하여 교잡종자를 선별하였다. 또한 GM 벼 및 야생 근연종벼들 간의 RAPD PCR 분석을 통해 선별한 marker를 사용하여 낙동 교잡벼와 샤레 교잡벼가 GM 벼와 교배된 식물체임을 확인하였다. PCR 분석을 수행한 결과 GM벼에서 도입된 trehalose-6-phosphate phosphatase (TPP) 유전자와 선별marker로 사용된 bar유전자가 GM벼 뿐만 아니라 샤레 교잡벼에도 존재하였으며, 결과적으로 GM벼의 bar 및 tpp 유전자가 잡초성벼인 샤레 교잡벼에 전이되었음을 검증할 수 있었다.

matK와 rbcL DNA 바코드 분석을 통한 반하(半夏) 및 반하(半夏) 유사 한약재 유전자 감별 (Molecular Authentication of Pinelliae Tuber from its adulterants by the analysis of DNA barcodes, matK and rbcL genes)

  • 이영미;문병철;지윤의;김욱진;김호경
    • 대한본초학회지
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    • 제28권6호
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    • pp.53-58
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    • 2013
  • Objectives : Pinelliae Tuber has been used as a typical unauthentic herbal medicines. Due to the morphological similarity between Pinelliae Tuber and adulterants, the correct authentication is very difficult. Therefore, we introduced DNA barcode to establish a powerful tool for the authentication of Pinelliae Tuner from adulterants. Methods : To obtain DNA barcode regions, genomic DNA was extracted from nineteen specimens of Pinellia ternata, Pinellia pedatisecta, Pinellia tripartita, and Typhonium flagelliforme, and matK and rbcL genes were amplified. For identification of species specific sequences and analysis phylogenetic relationship, a comparative analysis were performed by the ClastalW and UPGMA based on entire sequences of matK and rbcL genes, respectively. Results : In comparison of two DNA barcode sequences, we elucidated the phylogenetic relationship showing distinct four groups depending on species and identified 40 and 20 species specific nucleotides enough to distinguish each species from matK and rbcL gene, respectively. The sequence differences at the corresponding positions were avaliable genetic marker nulceotides to discriminate the correct species among analyzed four species. These results indicated that phylogentic and comparative analysis of matK and rbcL genes are useful genetic markers to authenticate Pinelliae Tubers. Conclusions : The marker nucleotides enough to distinguish P. ternata, P. tripatrita, P. peditisecta, and T. flagelliform, were observed at 40 positions in matK gene and 20 positions in rbcL gene sequence, respectively. These differences can be used to authenticate Pinelliae Tuber from adulterants as well as discriminate each four species.

Sample Size and Power Estimation in Case-Control Genetic Association Studies

  • Ahn Chul
    • Genomics & Informatics
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    • 제4권2호
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    • pp.51-56
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    • 2006
  • In planning a genetic association study, it is necessary to determine the number of samples to be collected for the study in order to achieve sufficient power to detect the hypothesized effect. The case-control design is increasingly used for genetic association studies due to the simplicity of its design. We review the methods for the sample size and power calculations in case-control genetic association studies between a marker locus and a disease phenotype.

단수적 용법의 ‘우리’ (Singular Wuli ‘we’)

  • 윤재학
    • 한국언어정보학회지:언어와정보
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    • 제7권2호
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    • pp.1-30
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    • 2003
  • This paper strives to characterize the singular use of the possessive marker wuli in Korean, frequently interpreted as ‘our’. Focusing on its singular use and plurality, we argue that wuli is no plural form of nay ‘my’, but that it just marks in-group membership. It is shown that the apparent plurality of wuli only arises as a by-product of the in-group membership marking. It is also presented that age and gender are important factors in selecting between wuli and nay.

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계층화 의사결정법에 의한 공공사업 투자안 평가에 관한 연구 (Evaluation Of Public Investment Project Using AHP)

  • 김형준;이공섭;김영민
    • 산업경영시스템학회지
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    • 제18권35호
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    • pp.123-130
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    • 1995
  • The analytic hierarchy process(AHP) is a multi-criteria decision methodology developed by T.L.Saaty(1980). The AHP presents flexible, easily understood wry to assist the decision-marker in formulating his problem in a logical and rational manner. This paper addresses the concept of AHP and its application in the evaluation of nuclear and coal-fired power generations.

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로젯사철란(Goodyera rosulacea: Orchidaceae)의 분류학적 위치: ITS와 trnL 염기서열에 의한 분자적 증거 (Taxonomic status of Goodyera rosulacea (Orchidaceae): molecular evidence based on ITS and trnL sequences)

  • 이창숙;엄상미;이남숙
    • 식물분류학회지
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    • 제36권3호
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    • pp.189-207
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    • 2006
  • 로젯사철란(G. rosulacea Y. Lee)은 애기사철란과 유사하나 로젯트형의 잎, 짧은 땅속줄기와 서식지 등의 특징에 의해 한국산 사철란속(Goodyera R. Br.) 내의 신종으로 기재된 바 있다. 로젯사철란의 분류군의 실체와 근연종간의 유연관계를 파악하기 위하여 군외군을 포함한 24개의 사철난속 식물을 대상으로 핵 리보좀(ribosomal)의 DNA internal transcribed spacer와 엽록체 DNA의 trnL 구간의 염기서열을 분석하였다. 분류군의 실체와 근연종간의 유연관계는 정렬된 염기서열을 바탕으로 최대절약분석(Maximum parsimony analysis)와 근연결합법(Neibour Joining method)에 의한 계통수 및 고유 표지유전자 여부로 추정하였다. 분석 결과 로젯사철란은 다수의 고유한 표지유전자를 가지며, ITS와 trnL 계통수에서 모두 단계통군을 형성하였다. 로젯사철란과 한국산 사철란속 내 각 분류군간의 유전적 거리(pairwise distance)는 ITS에서 3.49-6.68, trnL에서 5.05-9.53으로서 독립된 종으로 간주하기에 무리가 없었다. 따라서 분자적 결과는 로젯사철란을 사철란속내 독립된 종으로 처리하는 것을 지지하였다. 계통수에서 로젯사철란은 형태적으로 유사한 애기사철란(G. repens)과 동일한 분계조를 형성하였고, 유전적 거리도 조사한 분류군들 중 가장 낮은 값을 나타냈으므로 가장 가까운 근연분류군임을 나타내었다.

통초(通草), 목통(木通) 신속 감별용 ITS 염기서열 기반 SCAR 마커 및 Multiplex-SCAR 분석법 개발 (Development of ITS sequence based SCAR marker and multiplex-SCAR assay for the rapid authentication of Tetrapanacis Medulla and Akebiae Caulis)

  • 노푸름;김욱진;박인규;양선규;최고야;문병철
    • 대한본초학회지
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    • 제36권1호
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    • pp.9-17
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    • 2021
  • Objectives : Tetrapanacis Medulla and Akebiae Caulis are one of the most frequently adulterated herbal medicines because of their confusability of terms in the ancient writings and the similarity of morphological features of dried herbal products. The major adulterant is Aristolochia manshuriensis (Guanmutong) which has a serious safety concern with its toxicity. To ensure the safety and quality of the two herbal medicines, it is necessary to discriminate the toxic adulterant from authentic species. The aim of this study is to develop SCAR markers and to establish the multiplex-SCAR assay for discrimination of four plant species related to Tetrapanacis Medulla and Akebiae Caulis. Methods : ITS regions of fifteen samples of four species (Tetrapanax papyrifer, Fatsia japonica, Aristolochia manshuriensis, and Akebia quinata) collected from different sites were amplified and sequenced. Fifteen obtained ITS sequences were aligned and analysed for the detection of species-specific sequence variations. The SCAR markers were designed based on the sequence alignments and then, multiplex-SCAR assay enhancing rapidity was optimized. Results : ITS sequences clearly distinguished the four species at the species level. The developed SCAR markers and multiplex-SCAR assay were successfully discriminated four species and detected the adulteration of commercial product samples by comparison of the amplified DNA fragment sizes. Conclusions : These SCAR markers and multiplex-SCAR assay are a rapid, simple, and reliable method to identify the authentic Tetrapanacis Medulla and Akebiae Caulis from adulterants. These genetic tools will be useful to ensure the safety and to standardize the quality of the two herbal medicines.

S100A14 Promotes the Growth and Metastasis of Hepatocellular Carcinoma

  • Zhao, Fu-Tao;Jia, Zhan-Sheng;Yang, Qun;Song, Le;Jiang, Xiao-Jing
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권6호
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    • pp.3831-3836
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    • 2013
  • Background: S100A14 has recently been implicated in the progress of several types of cancers. This study aimed to investigate the clinical significance and possible mechanisms of action of S100A14 in the invasion and metastasis of hepatocellular carcinoma (HCC). Methods: S100A14 expression in HCC was detected at mRNA and protein levels and its prognostic significance was assessed. Functional roles of S100A14 in HCC were investigated using MTT, BrdU, wound healing, transwell invasion assay and HCC metastatic mouse model. Results: S100A14 was significantly elevated in HCC tissues, correlated with multiple tumor nodes, high Edmondson-Steiner grade and vascular invasion. Multivariate Cox analysis showed that the S100A14 expression level was a significant and independent prognostic factor for overall survival (OS) of HCC patients (hazard ratio=1.98, 95% confidence interval=1.14-3.46, P=0.013). S100A14 promoted cell proliferation, invasion and metastasis of HCC in vitro and in vivo. Conclusion: These results suggest S100A14 is a novel prognostic marker and therapeutic target for HCC.

LC-MS/MS 및 ICP를 이용한 당뇨환의 화학적 특성 분석 (Characteristic Effects of Dangnyo-hwan for Diabetes Control Studied Using LC-MS/MS and ICP)

  • 인정도;임대식;문승호;김원일
    • 대한한방내과학회지
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    • 제36권3호
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    • pp.217-227
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    • 2015
  • Objectives: The primary aim of this study was to identify bioactive compounds in Dangnyo-hwan, a Korean herbal medicine, through instrumental analysis using LC-MS/MS and ICP, and investigate its potential use in diabetes treatment. Methods: The extract of Dangnyo-hwan has 12 medicinal herbs; these were compared with 18 marker substances selected from literature survey. Results: LC-MS/MS analysis could detect 9 of the 18 bioactive compounds: citruline, catalpol, berberine, ginsenoside Rb1, ginsenoside Rg1, oleanolic acid, β-sitosterol, mangiferin, and schizandrin. While harmful heavy metals such as As, Pb, Cd, Hg, Ni, and Cu were not present in high concentrations, Zn concentration was 4.2 mg in 100 g Dangnyo-hwan. Conclusions: Instrumental analysis such as LC-MS/MS and ICP was successfully used to identify bioactive compounds in Dangnyo-hwan. Detection of 9 bioactive substances and Zn from the herb medicine is a valuable finding, and suggests that Dangnyo-hwan is a candidate medicine for diabetes. Further investigations like in vitro assay, percent GPR 119 activity, and percent human DGAT-1 inhibition are underway.