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Molecular Evidence of Recombination on Korean Isolates of Tomato yellow leaf curl virus by Nucleotide Transversions and Transitions

  • Lee, Hye-Jung;Park, Jung-An;Auh, Chung-Kyoon;Lee, Kyeong-Yeoll;Kim, Chang-Seok;Lee, Gwan-Seok;Soh, Hyun-Cheol;Choi, Hong-Soo;Lee, Suk-Chan
    • The Plant Pathology Journal
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    • v.27 no.4
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    • pp.378-384
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    • 2011
  • Tomato yellow leaf curl virus (TYLCV), a member of genus Begomovirus, was isolated in Korea in 2008. We sequenced and analyzed the DNA-A of 51 TYLCV isolates from Korea, and 13 of the TYLCV isolates were selected as type representatives of TYLCV from six Korean provinces. The 13 TYLCV isolates were classified into Korea Group 1 (KG1, nine isolates) and Korea Group 2 (KG2, four isolates) based on the results of phylogenetic analysis and genome size (2774 and 2781 nucleotides, respectively). A recombination detection program 3 (RDP3) revealed two recombinations between the TYLCV Korea isolates and other TYLCV isolates [Thailand (AF206674), Iran (AJ132711), and Israel (X76319)]. TYLCV Jeju isolate was characterized by two recombination events (E1 and E2) caused by the presence of E1 in ORF V1 and C3, which may seem to be the mutations of the high nucleotide transversion and transition rate. Collectively, our results suggest that the occurrence of nucleotide transversions and transitions in TYLCV DNA-A might have induced novel recombination events within the TYLCV Korea isolates.

Gray Mold on Carrot Caused by Botrytis cinerea in Korea

  • Park, Kyeong-Hun;Ryu, Kyoung-Yul;Yun, Hye-Jeong;Yun, Jeong-Chul;Kim, Byeong-Seok;Jeong, Kyu-Sik;Kwon, Young-Seok;Cha, Byeong-Jin
    • Research in Plant Disease
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    • v.17 no.3
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    • pp.364-368
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    • 2011
  • Gray mold caused by Botrytis cinerea was found on a carrot seedling in a greenhouse and a field at Daegwallryeong, Gangwon Province in 2007-2009. Symptoms included irregular, brown, blight, or chlorotic halo on leaves and petioles of the carrots. Fungal conidia were globose to subglobose or ellipsoid, hyaline or pale brown, nonseptate, one celled, $7.2-18.2{\times}4.5-11\;{\mu}m$ ($12.1{\times}8.3\;{\mu}m$) in size, and were formed on botryose heads. B. cinerea colonies were hyaline on PDA, and then turned gray and later changed dark gray or brown when spores appeared. The fungal growth stopped at $35^{\circ}C$, temperature range for proper growth was $15-25^{\circ}C$ on MEA and PDA. Carrots inoculated with $1{\times}10^5$ ml conidial suspension were incubated in a moist chamber at $25{\pm}1^{\circ}C$ for pathogenicity testing. Symptoms included irregular, brown, water-soaked rot on carrot roots and irregular, pale brown or dark brown, water-soaked rot on leaves. Symptoms were similar to the original symptoms under natural conditions. The pathogen was reisolated from diseased leaves, sliced roots, and whole roots after inoculation. As a result, this is the first report of carrot gray mold caused by B. cinerea in Korea.

Functional analysis of expressed sequence tags from the liver and brain of Korean Jindo dogs

  • Kim, Jae-Young;Park, Hye-Sun;Lim, Da-Jeong;Jang, Hong-Chul;Park, Hae-Suk;Lee, Kyung-Tai;Kim, Jong-Seok;Oh, Seok-Il;Kweon, Mu-Sik;Kim, Tae-Hun;Choi, Bong-Hwan
    • BMB Reports
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    • v.44 no.4
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    • pp.238-243
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    • 2011
  • We generated 16,993 expressed sequence tags (ESTs) from two libraries containing full-length cDNAs from the brain and liver of the Korean Jindo dog. An additional 365,909 ESTs from other dog breeds were identified from the NCBI dbEST database, and all ESTs were clustered into 28,514 consensus sequences using StackPack. We selected the 7,305 consensus sequences that could be assembled from at least five ESTs and estimated that 12,533 high-quality single nucleotide polymorphisms (SNPs) were present in 97,835 putative SNPs from the 7,305 consensus sequences. We identified 58 Jindo dog-specific SNPs in comparison to other breeds and predicted seven synonymous SNPs and ten non-synonymous SNPs. Using PolyPhen, a program that predicts changes in protein structure and potential effects on protein function caused by amino acid substitutions, three of the non-synonymous SNPs were predicted to result in changes in protein function for proteins expressed by three different genes (TUSC3, ITIH2, and NAT2).

HPLC Analysis of Saponins in Platycodi Radix (HPLC를 이용한 길경(桔梗) 사포닌 분석법(分析法))

  • Kim, Hyun-Ki;Choi, Jae-Seok;Yoo, Dae-Seok;Choi, Yeon-Hee;Yon, Gyu-Hwan;Hong, Kyung-Sik;Lee, Byung-Hoi;Kim, Hye-Jin;Kim, Eun-Ju;Park, Byoung-Keun;Jeong, Young-Chul;Kim, Young-Sup;Ryu, Shi-Yong
    • Korean Journal of Pharmacognosy
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    • v.38 no.2 s.149
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    • pp.192-196
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    • 2007
  • A rapid and practical HPLC assay was developed for quantitative analysis of saponins in Platycodi Radix. Seven saponin components in Platycodi Radix, i.e., deapioplatycoside E, platycoside E, deapioplatycodin D$_3$, platycodin D$_3$, polygalacin D$_2$, platycodin D$_2$ and platycodin D were successfully resolved on C18 column and detected by ELSD. Standard curves were linear over the concentration range 1 ${\sim}$2,000 ${\mu}$g/ml (r$^2$>0.992). Intra- and inter-day coefficients for variation of seven saponin components were < 10% and limit of quantification of them were around 0.7${\sim}$1.5 ${\mu}$g/ml, respectively. Using this method, contents of seven saponins in various plant materials under different cultivating conditions were estimated.

Variation of Saponin Content in the Decoctions of Platycodi Radix (길경(桔梗)의 추출조건에 따른 사포닌 함량의 변화)

  • Choi, Jae-Seok;Yoo, Dae-Seok;Choi, Yeon-Hee;Yon, Gyu-Hwan;Hong, Kyung-Sik;Lee, Byung-Hoe;Kim, Hye-Jin;Kim, Hyun-Ki;Kim, Eun-Ju;Roh, Seong-Hwan;Jeong, Young-Chul;Kim, Young-Sup;Ryu, Shi-Yong
    • Korean Journal of Pharmacognosy
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    • v.38 no.2 s.149
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    • pp.128-132
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    • 2007
  • We investigated the contents of crude saponin in the decoctions of Platycodi Radix prepared by the different extraction processes. Each lyophilized decoctions prepared by the different protocol were suspended in water and partitioned with ethylacetate (EtOAc) and n-butanol (BuOH), which gave the EtOAc fraction, BuOH fraction and the remaining water fraction, respectively. The content of crude saponin, which was estimated as the amount of BuOH fraction, and the HPLC profiles of the BuOH fraction were analyzed, and compared each others. The crude saponin content in the decoctions were increased proportionally to the increment of the extraction time, amount of water, extraction temperature and the number of repetition for extraction. Consequently, the optimized conditions were deduced to be suitable and recommendable for the preparation of Platycodi Radix ; the water amount needed for the extraction be 15-20 volumes to crude material, temperature for extraction be optimal at $85{\sim}100^{\circ}C$, extraction time be more than 5 hours and the repetition of extraction was 2 times.

A Study on the Differences of Opinion among Groups regarding the Street Landscape in the Old Urban Center -Focused on the Old Urban Center in Gimhae City- (구도심 가로경관에 대한 집단별 인식차이 연구 -김해시 구도심을 중심으로-)

  • Kang, Hye-Won;Seo, You-Seok;Ko, In-Seok
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.14 no.10
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    • pp.5192-5198
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    • 2013
  • The purpose of this study is to investigate the differences of opinion among the user groups in revitalizing the old urban center. To this end, the old downtown commercial street users in Gimhae traders, local and foreign visitors were surveyed. To examine the statistical significance, the chi-square test was performed. There were differences of opinion among three groups about the present condition and improvement of the street. Therefore, in activating the old commercial street we should reflect not only the opinions of merchants but also those of visitors. The results of this study are intended to be used as a reference to the revitalization of old commercial street.

Brain Neuroadaptative Changes in Adolescents with Internet Addiction : An FDG-PET Study with Statistical Parametric Mapping Analysis

  • Koo, Young-Jin;Paeng, Jin-Chul;Joo, Eun-Jeong;Kang, Hye-Jin;Im, Youn-Seok;Seok, Ju-Won;Kang, Ung-Gu
    • Journal of the Korean Academy of Child and Adolescent Psychiatry
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    • v.19 no.1
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    • pp.13-18
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    • 2008
  • Objectives : Internet addiction or pathologic internet use is one of the major mental health problems in children and adolescents in Korea. Internet addiction is defined as uncontrollable, markedly time-consuming internet use, which lasts for a period of at least six months. Internet addiction results in poor academic performance and negative parent-child relationships. By using $^{18}F$-fluorodeoxyglucose-positron emission tomography (FDG-PET), we investigated the effects of internet addiction on functional changes occurring in the adolescent brain. Methods : Adolescent patients with an internet addiction (4 boys and 2 girls; $15.6{\pm}1.2$ years) participated in this study. Eight healthy young adults (5 males and 3 females; 18-30 years old) with no previous history of psychiatric illness also participated as normal controls. Brain FDG-PET data was obtained with the participants in the resting condition and with no addictive stimuli. Results : Statistic parametric mapping analysis of the brain FDG-PET data revealed hypometabolic changes in the visual information processing circuits and hypermetabolic changes in the prefrontal areas in the adolescents with internet addiction, as compared with normal controls (p<.001). Conclusion : These results suggest a neuronal adaptation to excessive visual stimulation and synaptic plasticity due to internet addiction.

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Node Part Development of Vehicle Body with Space Frame Using Design Technology for Additive Manufacturing (적층가공 특화설계기법을 이용한 스페이스 프레임 차체 노드 부품 개발)

  • Yang, Min-Seok;Jang, Jin-Seok;Kim, Da-Hye;Sung, Ji-Hyun;Kim, Jeung-Tae;Cho, Yeong-Chul;Lee, Jae-Wook
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.19 no.5
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    • pp.45-52
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    • 2020
  • Recently, design for additive manufacturing (DfAM) technology has become a prominent design methodology for exploiting 3D printing, which leads the Fourth Industrial Revolution. When manufactured by the 3D printing method, it is possible to produce several shapes compared to the conventional casting or cutting process. DfAM-as a newly-proposed design methodology-can be used to specially design products with various shapes to apply functional requirements. Topology optimization verifies load paths to determine the draft design, and a shape-optimized design with objective functions for weight reduction enables efficient lightweight product design. In this study, by using these two DfAM technologies, a lightweight and optimal design is constructed for a node part of a vehicle body with a space frame designed for a lightweight vehicle. DfAM methodologies for concept design and detailed design, and the associated results, are presented. Finally, the product was additively manufactured, a fatigue performance test was performed, and the design reliability was verified.

Hypersensitivity Reactions to Oxaliplatin: Clinical Features and Risk Factors in Koreans

  • Kim, Mi-Yeong;Kang, Sung-Yoon;Lee, Suh-Young;Yang, Min-Suk;Kim, Min-Hye;Song, Woo-Jung;Kim, Sae-Hoon;Kim, Yo-Jung;Lee, Keun-Wook;Cho, Sang-Heon;Min, Kyung-Up;Lee, Jong-Seok;Kim, Jee-Hyun;Chang, Yoon-Seok
    • Asian Pacific Journal of Cancer Prevention
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    • v.13 no.4
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    • pp.1209-1215
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    • 2012
  • Background and Aim: Oxaliplatin hypersensitivity is a well-known adverse reaction but the prevalence varies and data for frequency and clinical features have not been reported for Korea. Here we evaluates the prevalence and risk factors for hypersensitivity reactions to oxaliplatin after chemotherapy. Methods: Clinical information on all patients treated with oxaliplatin was retrospectively reviewed in electronic medical records between August 2009 and July 2010 in Seoul National University Bundang Hospital. Patients who experienced hypersensitivity reactions to oxaliplatin were compared with those who did not. Results: A total of 393 patients received oxaliplatin, with 42 (10.7%) experiencing hypersensitivity reactions including three cases of anaphylaxis. Median cycle of the first hypersensitivity reaction was 8. Reactions correlated with lower dexamethasone doses. Other variables were not significant. Conclusions: The prevalence of hypersensitivity reactions was 10.7%, symptoms being mostly mild and cutaneous. Lower dexamethasone doses could be a predictor for hypersensitivity reactions to oxaliplatin.

Elementary School Teachers' Needs for the Website Providing Science Instructional Materials (과학 교수-학습 자료 지원 웹사이트에 대한 초등 교사들의 요구)

  • Kang, Suk-Jin;Song, Hye-Sung;Koh, Han-Joong;Shin, Young-Joon;Jhun, Young-Seok;Cha, Hee-Young;Oh, Phil-Seok;Song, Young-Wook
    • Journal of Korean Elementary Science Education
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    • v.29 no.1
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    • pp.22-31
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    • 2010
  • In this study, elementary school teachers' needs for the website providing science instructional materials were examined. The participants were 151 elementary school teachers. The test for needs analysis consisted of fifty-three Likert-type items; 24 items for the content of website category and 29 items for the design of website category. Variables about participants' characteristics such as teaching career, the capability of using computers, and the frequencies of searching websites in obtaining science instructional materials were also examined. The results indicated that teachers' needs for the content of website category were significantly higher than those for the design of website category. Teachers' needs were relatively higher in the items concerning flawless materials, consistency of materials with science curriculum and/or learning objectives, information about target grade and/or related topics, free website, and the materials capable of immediate use in the content of website category. The items concerning the stability of website, the accuracy of links, providing easy and reliable searching methods, easy and fast downloading, and providing list of loaded materials showed relatively higher needs in the design of website category. In several items, teachers' needs were also changed with their individual characteristics.

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