• Title/Summary/Keyword: Genetic loading

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Integrated Whole-Cell Biocatalysis for Trehalose Production from Maltose Using Permeabilized Pseudomonas monteilii Cells and Bioremoval of Byproduct

  • Trakarnpaiboon, Srisakul;Champreda, Verawat
    • Journal of Microbiology and Biotechnology
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    • v.32 no.8
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    • pp.1054-1063
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    • 2022
  • Trehalose is a non-conventional sugar with potent applications in the food, healthcare and biopharma industries. In this study, trehalose was synthesized from maltose using whole-cell Pseudomonas monteilii TBRC 1196 producing trehalose synthase (TreS) as the biocatalyst. The reaction condition was optimized using 1% Triton X-100 permeabilized cells. According to our central composite design (CCD) experiment, the optimal process was achieved at 35℃ and pH 8.0 for 24 h, resulting in the maximum trehalose yield of 51.60 g/g after 12 h using an initial cell loading of 94 g/l. Scale-up production in a lab-scale bioreactor led to the final trehalose concentration of 51.91 g/l with a yield of 51.60 g/g and productivity of 4.37 g/l/h together with 8.24 g/l glucose as a byproduct. A one-pot process integrating trehalose production and byproduct bioremoval showed 53.35% trehalose yield from 107.4 g/l after 15 h by permeabilized P. moteilii cells. The residual maltose and glucose were subsequently removed by Saccharomyces cerevisiae TBRC 12153, resulting in trehalose recovery of 99.23% with 24.85 g/l ethanol obtained as a co-product. The present work provides an integrated alternative process for trehalose production from maltose syrup in bio-industry.

Investigation of expanding-folding absorbers with functionally graded thickness under axial loading and optimization of crushing parameters

  • Chunwei, Zhang;Limeng, Zhu;Farayi, Musharavati;Afrasyab, Khan;Tamer A., Sebaey
    • Steel and Composite Structures
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    • v.45 no.6
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    • pp.775-796
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    • 2022
  • In this study, a new type of energy absorbers with a functionally graded thickness is investigated, these type of absorbers absorb energy through expanding-folding processes. The expanding-folding absorbers are composed of two sections: a thin-walled aluminum matrix and a thin-walled steel mandrel. Previous studies have shown higher efficiency of the mentioned absorbers compared to the conventional ones. In this study, the effect of thickness which has been functionally-graded on the aluminum matrix (in which expansion occurs) was investigated. To this end, initial functions were considered for the matrix thickness, which was ascending/descending along the axis. The study was done experimentally and numerically. Comparing the experimental data with the numerical results showed high consistency between the numerical and experimental results. In the final section of this study, the best energy absorber functionally graded thickness was introduced by optimization using a third-order genetic algorithm. The optimization results showed that by choosing a minimum thickness of 1.6 mm and the exponential coefficient of 3.25, the most optimal condition can be obtained for descending thickness absorbers.

Identification of SNPs Related to 19 Phenotypic Traits Using Genome-wide Association Study (GWAS) Approach in Korean Wheat Mini-core Collection

  • Yuna Kang;Yeonjun Sung;Seonghyeon Kim;Changsoo Kim
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2020.06a
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    • pp.120-120
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    • 2020
  • Based on the simple sequence repeat (SSR) marker, a Korean wheat core collection were established with 616 wheat accessions. Among them, the SNP genotyping for the entire genome was performed using DNA chip array to clarify the whole genome SNP profiles. Consequently, a total of 35,143 SNPs were found and we re-established a mini-core collection with 247 accessions. Population diversity and phylogenetic analysis revealed genetic diversity and relationships from the mini core set. In addition, genome-wide association study (GWAS) was performed on 19 phenotypic traits; ear type, awn length, culm length, ear length, awn color, seed coat color, culm color, ear color, loading, leaf length, leaf width, seeding stand, cold damage, weight, auricle, plant type, heading stage, maturation period, upright habit, and degree of flag leaf. The GWAS was performed using the fixed and random model circulating probability unification (FarmCPU), which identified 14 to 258 SNP loci related to 19 phenotypic traits. Our study indicates that this Korean wheat mini-core collection is a set of germplasm useful for basic and applied research with the aim of understanding and exploiting the genetic diversity of Korean wheat varieties.

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The significant influence of residual feed intake on flavor precursors and biomolecules in slow-growing Korat chicken meat

  • Poompramun, Chotima;Molee, Wittawat;Thumanu, Kanjana;Molee, Amonrat
    • Animal Bioscience
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    • v.34 no.10
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    • pp.1684-1694
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    • 2021
  • Objective: This study investigated the association between feed efficiency, physicochemical properties, flavor precursors and biomolecules in the thigh meat of Korat (KR) chickens. Methods: The feed intake and body weight of individual male KR chickens were recorded from 1 to 10 weeks old to calculate the individual residual feed intake (RFI) of 75 birds. At 10 weeks of age, chickens with the 10 highest (HRFI) and lowest RFI (LRFI) were slaughtered to provide thigh meat samples. The physicochemical properties (ultimate pH, water holding capacity [WHC], drip loss) and flavor precursors (guanosine monophosphate, inosine monophosphate (IMP), adenosine monophosphate and inosine) were analyzed conventionally, and Fourier transform infrared spectroscopy was used to identify the composition of biomolecules (lipids, ester lipids, amide I, amide II, amide III, and carbohydrates) and the secondary structure of the proteins. A group t-test was used to determine significant differences between mean values and principal component analysis to classify thigh meat samples into LRFI and HRFI KR chickens. Results: The physicochemical properties of thigh meat samples from LRFI and HRFI KR chickens were not significantly different but the IMP content, ratios of lipid, lipid ester, protein (amide I, amide II) were significantly different (p<0.05). The correlation loading results showed that the LRFI group was correlated with high ratios of lipids, lipid esters, collagen content (amide III) and beta sheet protein (rg loading >0.5) while the HRFI group was positively correlated with protein (amide I, amide II), alpha helix protein, IMP content, carbohydrate, ultimate pH and WHC (rg loading >0.5). Conclusion: The thigh meat from chickens with different RFI differed in physiochemical properties affecting meat texture, and in the contents of flavor precursors and biomolecules affecting the nutritional value of meat. This information can help animal breeders to make genetic improvements by taking more account of traits related to RFI.

The Variation of Germination, Growth and Leaf Form of Open-Pollinated Progenies of Cornus kousa Buerger ex Miquel in Korea (산딸나무(Cornus kousa) 풍매차대(風媒次代)의 발아(發芽), 생장(生長)및 엽형(葉型) 변이(變異))

  • Song, Jeong-Ho;Goo, Young-Bon;Han, Sim-Hee;Yang, Byeung-Hoon;Park, Hyung-Soon
    • Journal of Korean Society of Forest Science
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    • v.95 no.3
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    • pp.261-267
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    • 2006
  • A nursery trial comprising 109 progenies of 5 populations of Cornus kousa was analysed using multivariate analysis of 12 quantitative traits (growth and leaf form). The aim of this study was to examine geographic variation of the species based on the single, existing nursery trial to support a genetic resource conservation plan of Cornus kousa in Korea. Nested Anova showed that there were statistically significant differences among populations as well as among families within populations in all 12 quantitative traits. In 10 of 12 traits, variance components among families within populations were higher than those among populations. Cluster analysis using complete linkage method showed three groups to Euclidean distance 0.8. Among principal components, primary 2 principal components appeared to be major variables because of the loading contribution of 91.9%. The first contribution component was maximum width, vein number, blade length/petiole length and upper 1/3 width lower 1/3 width; the second one was height, diameter at root collar, blade length, upper 1/3 width, petiole length and petiole length/vein number, respectively. But all characters showed no significant difference with the pattern of geographic distribution.

The Variation of Needle Characteristics of Picea jezoensis(Siebold & Zucc.) Carriere Populations in Korea (한국산 가문비나무 자생집단의 침엽특성 변이)

  • Song, Jeong-Ho;Hur, Seong-Doo;Kang, Kyu-Suk;Yang, Byeung-Hoon;Lee, Jung-Joo
    • Korean Journal of Plant Resources
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    • v.22 no.1
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    • pp.31-36
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    • 2009
  • The aim of this study was to examine geographic variation to support a genetic resource conservation plan of rare endemic Picea jezoensis (Siebold & Zucc.) Carriere. Three populations of P. jezoensis were analysed using multivariate analysis for 7 characteristics of needle morphology. In the morphological characters, seven characters of needle were 15.11 mm (needle length), 1.43 mm (needle width), 0.42 mm (needle thickness), 10.9 (length / width of needle), 3.6 (width / thickness of needle), 0.47 mm (Distance between resin duct and vascular), 17.4 ea. (number of stomata row), respectively. Nested analysis showed that were statistically significant differences among populations as well as among individuals within populations in 6 quantitative characters. In 5 of 7 characters, variance components among populations were higher than those among individuals within populations. Cluster analysis using complete linkage method showed two groups (Mt. Gyebang populations was genetically distinct from the other two populations) to Euclidean distance 0.4. Among principal components, primary 2 principal components appeared to be major variables because of the loading contribution of 100%.

Phenotypic Characterization and Multivariate Analysis to Explain Body Conformation in Lesser Known Buffalo (Bubalus bubalis) from North India

  • Vohra, V.;Niranjan, S.K.;Mishra, A.K.;Jamuna, V.;Chopra, A.;Sharma, Neelesh;Jeong, Dong Kee
    • Asian-Australasian Journal of Animal Sciences
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    • v.28 no.3
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    • pp.311-317
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    • 2015
  • Phenotypic characterization and body biometric in 13 traits (height at withers, body length, chest girth, paunch girth, ear length, tail length, length of tail up to switch, face length, face width, horn length, circumference of horn at base, distances between pin bone and hip bone) were recorded in 233 adult Gojri buffaloes from Punjab and Himachal Pradesh states of India. Traits were analysed by using varimax rotated principal component analysis (PCA) with Kaiser Normalization to explain body conformation. PCA revealed four components which explained about 70.9% of the total variation. First component described the general body conformation and explained 31.5% of total variation. It was represented by significant positive high loading of height at wither, body length, heart girth, face length and face width. The communality ranged from 0.83 (hip bone distance) to 0.45 (horn length) and unique factors ranged from 0.16 to 0.55 for all these 13 different biometric traits. Present study suggests that first principal component can be used in the evaluation and comparison of body conformation in buffaloes and thus provides an opportunity to distinguish between early and late maturing to adult, based on a small group of biometric traits to explain body conformation in adult buffaloes.

Modeling shear capacity of RC slender beams without stirrups using genetic algorithms

  • Nehdi, M.;Greenough, T.
    • Smart Structures and Systems
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    • v.3 no.1
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    • pp.51-68
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    • 2007
  • High-strength concrete (HSC) is becoming increasingly attractive for various construction projects since it offers a multitude of benefits over normal-strength concrete (NSC). Unfortunately, current design provisions for shear capacity of RC slender beams are generally based on data developed for NSC members having a compressive strength of up to 50 MPa, with limited recommendations on the use of HSC. The failure of HSC beams is noticeably different than that of NSC beams since the transition zone between the cement paste and aggregates is much denser in HSC. Thus, unlike NSC beams in which micro-cracks propagate around aggregates, providing significant aggregate interlock, micro-cracks in HSC are trans-granular, resulting in relatively smoother fracture surfaces, thereby inhibiting aggregate interlock as a shear transfer mechanism and reducing the influence of compressive strength on the ultimate shear strength of HSC beams. In this study, a new approach based on genetic algorithms (GAs) was used to predict the shear capacity of both NSC and HSC slender beams without shear reinforcement. Shear capacity predictions of the GA model were compared to calculations of four other commonly used methods: the ACI method, CSA method, Eurocode-2, and Zsutty's equation. A parametric study was conducted to evaluate the ability of the GA model to capture the effect of basic shear design parameters on the behaviour of reinforced concrete (RC) beams under shear loading. The parameters investigated include compressivestrength, amount of longitudinal reinforcement, and beam's depth. It was found that the GA model provided more accurate evaluation of shear capacity compared to that of the other common methods and better captured the influence of the significant shear design parameters. Therefore, the GA model offers an attractive user-friendly alternative to conventional shear design methods.

Design of Cylindrical Composite Shell for Optimal Dimensions (최적 단면 치수를 가지는 복합재료 중공빔의 설계)

  • Chun Heong-Jae;Park Hyuk-Sung;Choi Yong-Jin
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.18 no.3
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    • pp.219-226
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    • 2005
  • In this study, the problem formulation and solution technique using genetic algorithms for design optimization of laminate composite cylindrical beam section are presented. The hollow cylindrical beams we usually used in the wheel chair. If the weight of wheel chair is reduced, it will lead to huge improvement in passenger's mobility and comfort. In this context, the replacement of steel by high performance and light weight composite material along with optimal design will be a good contribution in the process of weight reduction of a wheel chair. An artificial genetics approach for the design optimization of hollow cylindrical composite beam is presented. On applying the genetic algorithm, the optimal dimensions of hollow cylindrical composite beams which have equivalent rigidities to those of corresponding hollow cylindrical steel beams are obtained. Also structural analysis is conducted on the entire wheel chair structure incorporating Tsai-Wu failure criteria. The maximum Tsai-Wu failure criteria index is $0.192\times10^{-3}$ which is moth less than value of 1.00 indicating no failure is observed under excessive loading condition. It is found that the substitution of steel by composite material could reduce the weight of wheel chair up to 45%.

Clinical Findings and Gene Analysis of BH4 Responsive PKU Patients in Korea (BH4 responsive PKU 환자들의 임상적 특성과 유전자분석)

  • Rhee, Minhee;Kim, Jiwon;Lee, Jeongho;Lee, Dong Hwan
    • Journal of The Korean Society of Inherited Metabolic disease
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    • v.13 no.2
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    • pp.104-110
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    • 2013
  • Purpose: Phenylketonuria (PKU) is the first inherited metabolic disease of which treatment is known. We performed this study to find out clinical symptoms and prognosis of tetrahydrobiopterin (BH4) responsive PKU patients and genetic relation. Methods: Clinical, biochemical, genetic analysis were done retrospectively in 23 patients diagnosed BH4 responsive PKU in Soonchunhyang University Hospital from March 2000 to September 2012. Results: Patients were classified to mild hyperphenylalaninemia and mild phenylketonuria with initial plasma phenylalanine level below 20 mg/dL. After BH4 loading, blood phenylalanine decrease level ranged between 37% and 99%. Initial treatment with low phenylalanine formula or BH4 was started before 2 month after birth except 2 patients. And one of them resulted in developmental delay in language and social activity. The others showed satisfactory progress without developmental delay. In genetic analysis, of 46 allele, R241C allele mutation was identified most commonly (41%). R241C/A259T, R241C/R243Q, R241C/V388M, R241C/T278I was detected in 5 (21.7%), 3 (13%), 2 (8%), 2 (8%) patients, respectively. Conclusion: R241C mutation was detected most frequently in this study group and R243Q mutation which is known to be prevalent in Korean PKU patients was found in 4 patients (8.6%). Early diagnosis and treatment is important in PKU patients.

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