• Title/Summary/Keyword: Genetic analyses

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A Study on the Educational Implications of the Results of the Piaget's Experiment about the Psychogenesis in his Genetic Epistemology -Based on the Experiment of Inhelder and Piaget(1963) - (Piaget의 발생적 인식론에서 심리발생의 실험 결과가 나타내는 교육적 시사점에 대한 연구 -Inhelder와 Piaget(1963)의 실험을 기초로 하여-)

  • Park, Sun Yong
    • School Mathematics
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    • v.15 no.2
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    • pp.221-241
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    • 2013
  • This study considers the experiment of Inhelder and Piaget(1963) in various aspects, and reveals the characteristics of the 'the formation of a critical mind', 'the transformation into the research question', 'the translation into the experiment', and 'the interpretation of the result of the experiment' in Piaget's genetic epistemology. According to these analyses, this study discusses the educational implications that the results of the Piaget's experiment support the education which raises the student's awareness.

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Analysis of Genetic Diversity of Leaf Blight Pathogen of Sweet Persimmon Pestalotiopsis species with Isozyme Band Patterns (단감나무 둥근갈색 무늬병균 Pestalotiopsis spp.의 isozyme을 통한 유전다양성 분석)

  • 이윤수;우수진;최혜선;김경수;강원희;김명조;심재욱;장태현;임태헌
    • Korean Journal Plant Pathology
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    • v.14 no.5
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    • pp.502-506
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    • 1998
  • In this study, we calculated the genetic relationships of Pestalotiopsis species collected from various places in southern part of Korea through isozyme analyses. As a result, EST showed the largest number of band, and the number of bands were ranged from 5 to 7 on the average. All the isozymes used in this study showed distinctive band patterns for each isolates. Similarities among the compared isolates ranged from 48 to 93%. Isolates SP7, SP19 and SP23 showed more than 90% similarities, and most isolates showed similarities ranging from 65 to 82%.

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Mannose-Based Selection with Phosphomannose-Isomerase (PMI) Gene as a Positive Selectable Marker for Rice Genetic Transformation

  • Penna, Suprasanna;Ramaswamy, Manjunatha Benakanare;Anant., Bapat Vishvas.
    • Journal of Crop Science and Biotechnology
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    • v.11 no.4
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    • pp.233-236
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    • 2008
  • A positive selectable marker system was adapted for transformation of mature embryo-derived calli of Indica rice (Oryza sativa L.) utilizing the PMI gene encoding for phosphomannose-isomerase that converts mannose-6-phosphate to fructose-6-phosphate. The transformed cells grew on medium supplemented with 3% mannose as carbon source and calli were selected on media containing various concentrations of mannose. Molecular analyses showed that the transformed plants contained the PMI gene. The results indicate that the mannose selection system can be used for Agrobacterium-mediated transformation of mature embryo in rice to substitute the use of conventional selectable markers in genetic transformation.

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Parallel Genetic Algorithm for Structural Optimization on a Cluster of Personal Computers (구조최적화를 위한 병렬유전자 알고리즘)

  • 이준호;박효선
    • Proceedings of the Computational Structural Engineering Institute Conference
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    • 2000.10a
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    • pp.40-47
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    • 2000
  • One of the drawbacks of GA-based structural optimization is that the fitness evaluation of a population of hundreds of individuals requiring hundreds of structural analyses at each CA generation is computational too expensive. Therefore, a parallel genetic algorithm is developed for structural optimization on a cluster of personal computers in this paper. Based on the parallel genetic algorithm, a population at every generation is partitioned into a number of sub-populations equal to the number of slave computers. Parallelism is exploited at sub-population level by allocationg each sub-population to a slave computer. Thus, fitness of a population at each generation can be concurrently evaluated on a cluster of personal computers. For implementation of the algorithm a virtual distributed computing system in a collection of personal computers connected via a 100 Mb/s Ethernet LAN. The algorithm is applied to the minimum weight design of a steel structure. The results show that the computational time requied for serial GA-based structural optimization process is drastically reduced.

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Design for Associative Memory Using Genetic Algorithm (유전자 알고리즘을 이용한 연상메모리의 설계)

  • Shin, Nu-Lee-Da-Sle;Lee, Chong-Ho
    • Proceedings of the KIEE Conference
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    • 1996.07b
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    • pp.1356-1358
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    • 1996
  • Hopfield's suggestion of a neural network model for associative memory aroused the interest of many scientists and led to efforts of mathematical analyses. But the Hopfield Network has several disadvantages such as spurious states and capacity limitation. In that sense many scientists and engineers are trying to use a new optimization algorithm called genetic algorithm. But it is hard to use this algorithm in Hopfileld Network because of the fixed architecture. In this paper we introduce another method to determine the weight of Hopfield type network using Genetic Algorithm.

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Genetics of Alzheimer's Disease

  • Kim, Jong Hun
    • Dementia and Neurocognitive Disorders
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    • v.17 no.4
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    • pp.131-136
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    • 2018
  • Alzheimer's disease (AD) related genes have been elucidated by advanced genetic techniques. Familial autosomal dominant AD genes founded by linkage analyses are APP, PSEN1, PSEN2, ABCA7, and SORL1. Genome-wide association studies have found risk genes such as ABCA7, BIN1, CASS4, CD33, CD2AP, CELF1, CLU, CR1, DSG2, EPHA1, FERMT2, HLA-DRB5-HLA-DRB1, INPP5D, MEF2C, MS4A6A/MS4A4E, NME8, PICALM, PTK2B, SLC24A4, SORL1, and ZCWPW1. ABCA7, SORL1, TREM2, and APOE are proved to have high odds ratio (>2) in risk of AD using next generation sequencing studies. Thanks to the promising genetic techniques such as CRISPR-CAS9 and single-cell RNA sequencing opened a new era in genetics. CRISPR-CAS9 can directly link genetic knowledge to future treatment. Single-cell RNA sequencing are providing useful information on cell biology and pathogenesis of diverse diseases.

Optimum design of steel space frames with composite beams using genetic algorithm

  • Artar, Musa;Daloglu, Ayse T.
    • Steel and Composite Structures
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    • v.19 no.2
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    • pp.503-519
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    • 2015
  • This paper presents an optimization process using Genetic Algorithm (GA) for minimum weight by selecting suitable standard sections from a specified list taken from American Institute of Steel Construction (AISC). The stress constraints obeying AISC-LRFD (American Institute of Steel Construction-Load and Resistance Factor Design), lateral displacement constraints being the top and inter-storey drift, mid-span deflection constraints for the beams and geometric constraints are considered for optimum design by using GA that mimics biological processes. Optimum designs for three different space frames taken from the literature are carried out first without considering concrete slab effects in finite element analyses for the constraints above and the results are compared with the ones available in literature. The same optimization procedures are then repeated for the case of space frames with composite (steel and concrete) beams. A program is coded in MATLAB for the optimization processes. Results obtained in the study showed that consideration of the contribution of the concrete on the behavior of the floor beams results with less steel weight and ends up with more economical designs.

Shape Scheme and Size Discrete Optimum Design of Plane Steel Trusses Using Improved Genetic Algorithm (개선된 유전자 알고리즘을 이용한 평면 철골트러스의 형상계획 및 단면 이산화 최적설계)

  • Kim, Soo-Won;Yuh, Baeg-Youh;Park, Choon-Wok;Kang, Moon-Myung
    • Journal of Korean Association for Spatial Structures
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    • v.4 no.2 s.12
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    • pp.89-97
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    • 2004
  • The objective of this study is the development of a scheme and discrete optimum design algorithm, which is based on the genetic algorithm. The algorithm can perform both scheme and size optimum designs of plane trusses. The developed Scheme genetic algorithm was implemented in a computer program. For the optimum design, the objective function is the weight of structures and the constraints are limits on loads and serviceability. The basic search method for the optimum design is the genetic algorithm. The algorithm is known to be very efficient for the discrete optimization. However, its application to the complicated structures has been limited because of the extreme time need for a number of structural analyses. This study solves the problem by introducing the size & scheme genetic algorithm operators into the genetic algorithm. The genetic process virtually takes no time. However, the evolutionary process requires a tremendous amount of time for a number of structural analyses. Therefore, the application of the genetic algorithm to the complicated structures is extremely difficult, if not impossible. The scheme genetic algorithm operators was introduced to overcome the problem and to complement the evolutionary process. It is very efficient in the approximate analyses and scheme and size optimization of plane trusses structures and considerably reduces structural analysis time. Scheme and size discrete optimum combined into the genetic algorithm is what makes the practical discrete optimum design of plane fusses structures possible. The efficiency and validity of the developed discrete optimum design algorithm was verified by applying the algorithm to various optimum design examples: plane pratt, howe and warren truss.

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mtDNA Diversity and Phylogenetic State of Korean Cattle Breed, Chikso

  • Kim, Jae-Hwan;Byun, Mi Jeong;Kim, Myung-Jick;Suh, Sang Won;Ko, Yeoung-Gyu;Lee, Chang Woo;Jung, Kyoung-Sub;Kim, Eun Sung;Yu, Dae Jung;Kim, Woo Hyun;Choi, Seong-Bok
    • Asian-Australasian Journal of Animal Sciences
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    • v.26 no.2
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    • pp.163-170
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    • 2013
  • In order to analyze the genetic diversity and phylogenetic status of the Korean Chikso breed, we determined sequences of mtDNA cytochrome b (cyt b) gene and performed phylogenetic analysis using 239 individuals from 5 Chikso populations. Five non-synonymous mutations of a total of 15 polymorphic sites were identified among 239 cyt b coding sequences. Thirteen haplotypes were defined, and haplotype diversity was 0.4709 ranging from 0.2577 to 0.6114. Thirty-five haplotypes (C1-C35) were classified among 9 Asia and 3 European breeds. C2 was a major haplotype that contained 206 sequences (64.6%) from all breeds used. C3-C13 haplotypes were Chikso-specific haplotypes. C1 and C2 haplotypes contained 80.5% of cyt b sequences of Hanwoo, Yanbian, Zaosheng and JB breeds. In phylogenetic analyses, the Chikso breed was contained into B. taurus lineage and was genetically more closely related to two Chinese breeds than to Korean brown cattle, Hanwoo. These results suggest that Chikso and Hanwoo have a genetic difference based on the mtDNA cyt b gene as well as their coat color, sufficient for classification as a separate breed.

Morphological Characteristics and Genetic Diversity Analysis of Platycodon grandiflorum (Jacq.) A. DC Determined Using SSR Markers (도라지 수집종의 형태적 특성과 SSR마커에 의한 유연관계 분석)

  • Um, Yurry;Lee, Yi;Jin, Mei-Lan;Lee, Dae Young;Lee, Jae Won;Kim, Geum Soog;Kim, Chang Kug;Hong, Chang Pyo;Kim, Ok Tae
    • Korean Journal of Medicinal Crop Science
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    • v.24 no.1
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    • pp.55-61
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    • 2016
  • Background : Plant breeding requires the collection of genetically diverse genetic resources. Studies on the characteristics of Platycodon grandiflorum resources have not been carried out so far. The present study was carried out to discriminate P. grandiflorum based on morphological characteristics and genetic diversity using simple sequence repeat (SSR) markers. Methods and Results :We collected 11 P. grandiflorum cultivars: Maries II, Hakone double white, Hakone double blue, Fuji white, Fuji pink, Fuji blue, Astra white, Astra pink, Astra blue, Astra semi-double blue and Jangbaek. Analyses of the morphological characteristics of the collection were conducted for aerial parts (flower, stem and leaf) and underground parts (root). Next, the genetic diversity of all P. grandiflorum resources was analyzed using SSR markers employing the DNA fragment analysis method. We determined that the 11 P. grandiflorum cultivars analyzed could be classified by plant length, leaf number and root characteristic. Based on the genetic diversity analysis, these cultivars were classified into four distinct groups. Conclusions : These findings could be used for further research on cultivar development using molecular breeding techniques and for conservation of the genetic diversity of P. grandiflorum. Moreover, the markers could be used for genetic mapping of the plant and marker-assisted selection for crop breeding.