• Title/Summary/Keyword: Genetic Model

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Genetic Parameter Estimates for Ultrasonic Meat Qualities in Hanwoo Cows

  • Lee, D.H.;Choudhary, V.;Lee, G.H.
    • Asian-Australasian Journal of Animal Sciences
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    • 제19권4호
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    • pp.468-474
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    • 2006
  • Real time ultrasound data was generated on 10,596 live Hanwoo cows to study genetic variation on ultrasonic beef quality traits and to assess the best model to estimate genetic parameters on these traits. Pedigree stacking and data validation was done using the SAS statistical software and the genetic parameter estimates were obtained by EM-REML algorithm. Out of the five different multi-trait mixed animal models constructed, the optimal model included fixed effects of herd, year-season-appraisal, body condition score, linear and quadratic covariates for chest girth, the linear covariate effect of age and the random animal and residual effect of the five models studied. The heritability of longissimus muscle area (LMA), $12^{th}$ rib measurement of back fat thickness (BF) and marbling score (MS) was 0.11, 0.17 and 0.15, respectively. Genetic correlation of LMA vs. BF, LMA vs. MS and BF vs. MS was -0.15, 0.06 and 0.61, respectively. The results showed presence of genetic variation in these ultrasonic beef quality traits in Hanwoo cows and suggest that the selection of Hanwoo cows may be possible by performing ultrasonic scans on live animals, which will ultimately be helpful in reducing the generation interval and the cost of selection procedure.

Genetic Parameters of Milk Yield and Milk Fat Percentage Test Day Records of Iranian Holstein Cows

  • Shadparvar, A.A.;Yazdanshenas, M.S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제18권9호
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    • pp.1231-1236
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    • 2005
  • Genetic parameters for first lactation milk production based on test day (TD) records of 56319 Iranian Holstein cows from 655 herds that first calved between 1991 and 2001 were estimated with restricted maximum likelihood method under an Animal model. Traits analyzed were milk yield and milk fat percentage. Heritability for TD records were highest in second half of the lactation, ranging from 0.11 to 0.19 for milk yield and 0.038 to 0.094 for milk fat percentage respectively. Estimates for lactation records for these traits were 0.24 and 0.26 respectively. Genetic correlations between individual TD records were high for consecutive TD records (>0.9) and decreased as the interval between tests increased. Estimates of genetic correlations of TD yield with corresponding lactation yield were highest (0.78 to 0.86) for mid-lactation (TD3 to TD8). Phenotypic correlations were lower than corresponding genetic correlations, but both followed the same pattern. For milk fat percentage no clear pattern was found. Results of this study suggested that TD yields especially in mid-lactation may be used for genetic evaluation instead of 305-day yield.

Estimation of Genetic Parameters for Wool Traits in Angora Rabbit

  • Niranjan, S.K.;Sharma, S.R.;Gowane, G.R.
    • Asian-Australasian Journal of Animal Sciences
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    • 제24권10호
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    • pp.1335-1340
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    • 2011
  • Different genetic parameters for weaning weight and wool traits were estimated using restricted maximum likelihood (REML) in Angora rabbits. Total wool yield of first (I), second (II) and third (III) clips were taken as a separate trait under study. The records from more than 2,700 animals were analysed through fitting six animal models with various combinations of direct and maternal effects. A log likelihood ratio test was used to select the most appropriate model for each trait. Direct heritability estimates for the wool traits were found to be moderate to high across different models. Heritability estimates obtained from the best model were 0.24, 0.22, 0.20 and 0.21 for weaning weight, clip I, II and III; respectively. Maternal effects especially due to permanent environment had higher importance at clip I and found to be declining in subsequent clips. The estimates of repeatability of doe effect on wool traits were 0.44, 0.26 and 0.18 for clip I, II and III; respectively. Weaning weight had moderately high genetic correlations with clip I (0.57) and II (0.45), but very low (0.11) with clip III. Results indicated that genetic improvement for wool yield in Angora rabbit is possible through direct selection. Further, weaning weight could be considered as desirable trait for earliest indirect selection for wool yield in view of its high genetic correlation with wool traits.

유전자 알고리즘 기반의 기업부실예측 통합모형 (Integrated Corporate Bankruptcy Prediction Model Using Genetic Algorithms)

  • 옥중경;김경재
    • 지능정보연구
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    • 제15권4호
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    • pp.99-121
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    • 2009
  • 최근 데이터마이닝 기법을 이용하여 기업의 부실을 예측하고자 하는 연구가 많이 이루어져 왔다. 여러 연구자들에 의해 다양한 데이터마이닝 기법이 연구되었으나 각 방법론이 장단점을 가지고 있기에 이를 보완적으로 사용하고자하는 결합기법에 대한 연구도 꾸준하게 발표되고 있다. 본 연구에서는 데이터마이닝 기법을 각 기법의 특성을 바탕으로 4가지 형태로 구분하고 각 형태의 대표적인 기법을 선택하여 이를 유전자알고리즘을 통하여 통합하는 기법을 제안한다. 유전자알고리즘은 전역최적화기법으로 다양한 기법의 결과를 유기적으로 통합하여 최적해 또는 유사최적해를 찾게 해 줄 것이다. 본 연구에서는 기업부실예측에서 유용한 모형을 찾기 위하여 단일모형, 기존의 통합모형과 본 연구에서 제안하는 유전자알고리즘 통합기법의 결과를 비교한다.

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적응형 계층적 공정 경쟁 기반 병렬유전자 알고리즘의 구현 및 비선형 시스템 모델링으로의 적용 (Implementation of Adaptive Hierarchical Fair Com pet ion-based Genetic Algorithms and Its Application to Nonlinear System Modeling)

  • 최정내;오성권;김현기
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2006년 학술대회 논문집 정보 및 제어부문
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    • pp.120-122
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    • 2006
  • The paper concerns the hybrid optimization of fuzzy inference systems that is based on Hierarchical Fair Competition-based Parallel Genetic Algorithms (HFCGA) and information data granulation. The granulation is realized with the aid of the Hard C-means clustering and HFCGA is a kind of multi-populations of Parallel Genetic Algorithms (PGA), and it is used for structure optimization and parameter identification of fuzzy model. It concerns the fuzzy model-related parameters such as the number of input variables to be used, a collection of specific subset of input variables, the number of membership functions, the order of polynomial, and the apexes of the membership function. In the hybrid optimization process, two general optimization mechanisms are explored. Thestructural optimization is realized via HFCGA and HCM method whereas in case of the parametric optimization we proceed with a standard least square method as well as HFCGA method as well. A comparative analysis demonstrates that the proposed algorithm is superior to the conventional methods.

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파일럿형 압력 릴리프 밸브의 최적설계 (An Optimal Design of pilot type relief valve by Genetic Algorithm)

  • 김승우;안경관;양순용;이병룡;윤소남
    • 한국정밀공학회:학술대회논문집
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    • 한국정밀공학회 2003년도 춘계학술대회 논문집
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    • pp.1006-1011
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    • 2003
  • In this study, a novel systematic design procedure by Genetic Algorithm of a two stage relief valve is proposed. First of all, a mathematical model describing the dynamics of a balanced piston type relief valve has been derived. Governing equations such as dynamic equations for the main spool and the pilot spool and flow equations for each orifice are established. The mathematical model is verified by comparing the results of simulation with that of experiments. Furthermore, influences of the parameters on the dynamic characteristics of a relief valve have been investigated by simulation of the proposed model. Major design parameters on the valve response are determined, which affect the system response significantly. And then, using the determined parameters, the optimization of the two stage relief valve by Genetic Algorithm, which is a random search algorithm can find the global optimum without converging local optimum, is performed. The optimal design process of a two stage relief valve is presented to determine the major design parameters. Fitness function reflects the changing pressure according to parameters. It is shown that the genetic algorithms satisfactorily optimized the major design parameters of the two stage relief valve.

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유전자 알고리즘을 이용한 2단 릴리프 밸브의 최적설계 (An Optimal Design of a two stage relief valve by Genetic Algorithm)

  • 김승우;안경관;이병룡
    • 한국정밀공학회:학술대회논문집
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    • 한국정밀공학회 2002년도 추계학술대회 논문집
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    • pp.501-506
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    • 2002
  • In this study, a novel systematic design procedure by Genetic Algorithm of a two stage relief valve is proposed. First of all. a mathematical model describing the dynamics of a balanced piston type relief valve has been derived. Governing equations such as dynamic equations for the main spool and the pilot spool and flow equations for each orifice are established. The mathematical model is verified by comparing the results of simulation with that of experiments. Furthermore, influences of the parameters on the dynamic characteristics of a relief valve have been investigated by simulation of the proposed model. Major design parameters on the valve response are determined, which affect the system response significantly. And then, using the determined parameters, the optimization of the two stage relief valve by Genetic Algorithm, which is a random search algorithm can find the global optimum without converging local optimum, is performed. The optimal design process of a two stage relief valve is presented to determine the major design parameters. Fitness function reflects the changing pressure according to parameters. It is shown that the genetic algorithms satisfactorily optimized the major design parameters of the two stage relief valve.

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Grid-based Gaussian process models for longitudinal genetic data

  • Chung, Wonil
    • Communications for Statistical Applications and Methods
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    • 제29권1호
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    • pp.65-83
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    • 2022
  • Although various statistical methods have been developed to map time-dependent genetic factors, most identified genetic variants can explain only a small portion of the estimated genetic variation in longitudinal traits. Gene-gene and gene-time/environment interactions are known to be important putative sources of the missing heritability. However, mapping epistatic gene-gene interactions is extremely difficult due to the very large parameter spaces for models containing such interactions. In this paper, we develop a Gaussian process (GP) based nonparametric Bayesian variable selection method for longitudinal data. It maps multiple genetic markers without restricting to pairwise interactions. Rather than modeling each main and interaction term explicitly, the GP model measures the importance of each marker, regardless of whether it is mostly due to a main effect or some interaction effect(s), via an unspecified function. To improve the flexibility of the GP model, we propose a novel grid-based method for the within-subject dependence structure. The proposed method can accurately approximate complex covariance structures. The dimension of the covariance matrix depends only on the number of fixed grid points although each subject may have different numbers of measurements at different time points. The deviance information criterion (DIC) and the Bayesian predictive information criterion (BPIC) are proposed for selecting an optimal number of grid points. To efficiently draw posterior samples, we combine a hybrid Monte Carlo method with a partially collapsed Gibbs (PCG) sampler. We apply the proposed GP model to a mouse dataset on age-related body weight.

다중플랜트 네트워크에서의 공급사슬계획 (Supply Chain Planning in Multiplant Network)

  • 정재혁;문치웅;김종수
    • 한국산업경영시스템학회:학술대회논문집
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    • 한국산업경영시스템학회 2002년도 춘계학술대회
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    • pp.203-208
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    • 2002
  • In case of the problems with multiple plants, alternative operation sequence, alternative machine, setup time, and transportation time between plants, we need a robust methodology for the integration of process planning and scheduling in supply chain. The objective of this model is to minimize the tardiness and to maximize the resource utilization. So, we propose a multi-objective model with limited-capacity constraint. To solve this model, we develope an efficient and flexible model using adaptive genetic algorithm(AGA), compared to traditional genetic algorithm(TGA)

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THE APPLICATION OF STOCHASTIC DIFFERENTIAL EQUATIONS TO POPULATION GENETIC MODEL

  • Choi, Won;Choi, Dug-Hwan
    • 대한수학회보
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    • 제40권4호
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    • pp.677-683
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    • 2003
  • In multi-allelic model $X\;=\;(x_1,\;x_2,\;\cdots\;,\;x_d),\;M_f(t)\;=\;f(p(t))\;-\;{\int_0}^t\;Lf(p(t))ds$ is a P-martingale for diffusion operator L under the certain conditions. In this note, we examine the stochastic differential equation for model X and find the properties using stochastic differential equation.