• 한국미생물·생명공학회지
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• 제16권6호
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• pp.536-539
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• 1988

A mutant of Bacillus subtilis with a defective cdd gene encoding deoxycytidine-cytidine deaminase (EC 3.5.4.5) has been characterized genetically. The genetic lesion, cdd, causing the altered deoxycytidine-cytidine deaminase was mapped at 225 min on the linkage map of B. subtilis by AR9 transduction, Transductional analysis of the cdd region established the gene order in clockwise as trp-lys-cdd-aroD. The cdd gene was linked 72% with the aroD and 20% with the lys.

• 한국정보처리학회:학술대회논문집
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• 한국정보처리학회 2000년도 제13회 춘계학술대회 및 임시총회 학술발표 논문집
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• pp.89-93
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• 2000

구조 적응형 자기구성 지도는 일반적으로 자기구성 지도의 구조가 초기에 결정되어 학습이 끝날 때까지 변하지 않기 때문에 발생하는 문제를 해결하기 위해 지도의 구조를 학습 중에 적절하게 변경시킨다. 이때, 변화된 구조의 가중치를 어떻게 초기화시킬 것인가 하는 것이 중요한 문제이다. 이 논문에서는 기존의 비교사 학습방법에 LVQ 알고리즘을 이용한 교사 학습방법을 결합한 구조 적응형 자기구성 지도 모델에서 유전자 알고리즘을 이용하여 분화된 노드의 가중치를 결정하는 방법을 제안한다. 이 방법은 기존의 구조 적응형 자기구성 지도 알고리즘보다 빠르게 학습되었고, 인식률 면에서도 기존의 방법보다 높은 값을 나타내었으며, 자기구성 지도의 특성인 위상 보존도 잘 이루어졌다. 오프라인 필기 숫자 데이터로 실험한 결과, 제안한 방법이 유용함을 알 수 있었다.

• 환경생물
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• 제39권3호
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• pp.293-297
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• 2021

Two linyphiid spiders, Saitonia kawaguchikonis Saito & Ono, 2001 and Asthenargus niphonius Saito & Ono, 2001 were confirmed from Korea for the first time. Males of S. kawaguchikonis and a female of A. niphonius were collected with pitfall traps in a leaf litter of mixed forests in three National Parks (Hallyeohaesang National Park, Mt. Naejangsan, and Mt. Sobaeksan) during the seasonal surveys for the spider fauna in mountainous terrain from 2018 to 2020. These two species were formerly known from China and Japan, or only from Japan, respectively. The present study describes these two species with measurements, morphological illustrations, and a distribution map. This report adds the genus Asthenargus Simon & Fage, 1922 from Korea to the Korean spider fauna for the first time.

• Journal of Plant Biotechnology
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• 제46권2호
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• pp.71-78
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• 2019

The objective of this study was to use 'Danta PR', NGS (Next Generation Sequencing) technology for genome resequencing to develop polymorphic makers between Chinese oriental melon, 'Hyangseo 1' and Korean oriental melon. From the resequencing data that covered about 81 times of the genome size, 104,357 of SSR motifs and Indel, and 1,092,436 of SNPs were identified. 299 SSR and 307 Indel markers were chosen to cover each chromosome with 25 markers. These markers were subsequently used to identify genotypes of 'Danta PR' BC1 (F1 x 'Danta PR') population and a genetic linkage map was constructed. SSR, Indel, and SNPs identified in this study would be useful as a breeding tool to develop new oriental melon varieties.

• Journal of Species Research
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• 제11권2호
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• pp.94-97
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• 2022

Linyphiidae Blackwall, 1859 is one of the most diverse and largest families within the order Araneae Clerck, 1757. Of the currently 60 valid species of the genus Neriene Blackwall, 1833 worldwide, 10 species are distributed in Korea. The males of the new sheet-web spider Neriene bovista sp. nov. were recently collected with a sweep net between the shrubs of mixed forests from the hilly valley with well conserved nature in Uljin-gun, Gyeongsangbuk-do (the middle east coast region) during a seasonal survey of the spider fauna in hilly terrains in 2017-2018. The present study describes a new sheet-web spider, Neriene bovista sp. nov. with a diagnosis, detailed description, morphological illustrations, and a distribution map from Korea. The new species has a characteristic mushroom-like tip of the terminal apophysis, the truncated tip of anterior projection, and the bifurcated lateral projection of the lamella compared to the congeners of the genus Neriene Blackwall, 1833.

• 한국산림과학회지
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• 제89권4호
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• pp.536-542
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• 2000

소나무 단일개체에서 채취한 풍매종자 중 임의로 선택한 96개의 반수체 genome을 이용하여 RAPD 및 I-SSR PCR 증폭산물을 분석하였다. RAPD 분석용 primer 200개와 I-SSR 분석 용 primer 90개를 screen하여 증폭산물의 분획양상이 선명한 RAPD primer 45개와 I-SSR primer 22개를 선택하여 PCR을 수행하였다. 45개의 RAPD primer중 25개와 22개의 I-SSR primer중 18개를 사용한 PCR 분석결과에서 멘델의 유전양식을 만족하는 52개 (2.08/primer)와 46개 (2.56/primer)의 다형성 유전자좌를 각각 확인하였다. 멘델의 유전양식을 만족하는 96개의 다형성 유전자좌를 대상으로 LOD 3.0에서 two-point 연관분석을 수행한 결과 총 63개(35개의 RAPD와 26개의 I-SSR)의 유전자화가 20개의 연관군에 속하는 것이 확인되었다. 총 연관거리는 1097.8 cM이었으며, 유전자좌간 평균연관 거리는 25.5 cM, 최소 및 최대연관 거리는 각각 4.3 cM 및 54.9 cM이었다. 그리고 20개의 연관군 중 14개의 연관군이 RAPD와 I-SSR 유전자좌의 통합에 의해서 형성된 연관군이었다. 즉, 52개의 RAPD와 46개의 I-SSR 유전자좌를 각각 분석한 결과보다 길고 새로운 연관군이 형성되었다. 보다 정밀한 유전자 연관지도를 작성하기 위해서는 보다 많은 수의 DNA marker가 필요하다고 판단되며, 본 연구의 결과는 소나무의 유용 유전자의 확인 및 생장과 재질과 같은 유용형질에 대한 QTL의 위치를 결정하는 데 기초자료가 될 것이다.

• 대한미생물학회지
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• 제34권6호
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• pp.519-532
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• 1999

Helicobacter pylori is a causative agent of type B gastritis and plays a central role in the pathogenesis of gastroduodenal ulcer and gastric cancer. To elucidate the host-parasite relationship of the H. pylori infection on the basis of molecular biology, we tried to evaluate the genomic diversity of H. pylori. An ordered overlapping bacterial artificial chromosome (BAC) library of a Korean isolate, H. pylori 51 was constructed to set up a genomic map. A circular physical map was constructed by aligning ApaI, NotI and SfiI-digested chromosomal DNA. When the physical map of H. pylori 51 was compared to that of unrelated strain, H. pylori 26695, completely different restriction patterns were shown. Fifteen known genes were mapped on the chromosome of H. pylori 51 and the genetic map was compared with those of strain 26695 and J99, of which the entire genomic sequences were reported. There were some variability in the gene location as well as gene order among three strains. For further analysis on the genomic diversity of H. pylori, when comparing the genomic structure of 150 H. pylori Korean isolates with one another, genomic macrodiversity of H. pylori was characterized by several features: whether or not susceptible to restriction digestion of the chromsome, variation in chromosomal restriction fingerprint and/or high frequency of gene rearrangement. We also examined the extent of allelic variation in nucleotide or deduced amino acid sequences at the individual gene level. fucT, cagA and vacA were confirmed to carry regions of high variation in nucleotide sequence among strains. The plasticity zone and strain-specific genes of H. pylori 51 were analyzed and compared with the former two genomic sequences. It should be noted that the H. pylori 51-specific sequences were dispersed on the chromosome, not congregated in the plasticity zone unlike J99- or 26695-specific genes, suggesting the high frequency of gene rearrangement in H. pylori genome. The genome of H. pylori 51 shows differences in the overall genomic organization, gene order, and even in the nucleotide sequences among the H. pylori strains, which are far greater than the differences reported on the genomic diversity of H. pylori.

• 대한토목학회논문집
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• 제39권6호
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• pp.713-723
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• 2019

기후변화와 다양한 강우 패턴에 의하여 도시 유역 별 침수발생 기준을 산정하기에 어려움이 있다. 이에 도시 유역의 상세 지형, 배수체계 그리고 다양한 강우 시나리오를 고려하여 침수해석을 실시 및 결과를 검토할 필요가 있으며, 동일 지역에 대한 실측 강우에 따른 침수 사상을 조사할 필요가 있다. 본 연구에서는 서울시 효자 배수분구의 침수 발생에 영향을 미치는 강우 특성을 파악하기 위해 확률론적 빈도 분석과 Huff 분포를 고려한 다양한 강우 시나리오를 생성하였으며, 1차원 도시유출해석을 위한 SWMM (Storm Water Management Model)과 2차원 침수해석 모형을 이용하였다. 본 연구에서 사용된 SWMM 모형은 침수흔적도와 유전자 알고리즘을 통해 최적화 되었다. 최적화 된 1차원 모형을 2차원 침수해석과 연계하여 기존의 침수흔적도와 73.6 %의 적합도를 나타낼 수 있었다. 각 강우량에 따른 침수 발생 유무를 파악하였으며, 로지스틱 회귀 곡선을 통하여 침수발생 한계강우량을 산정할 수 있었다. 1-2차원 침수해석 결과와 2010~2018년 AWS (Automated Weather System)자료와 ASOS (Automated Synoptic Observing System)를 반영한 결과, 지속시간 1시간의 경우 침수발생 한계강우량은 72.04 mm, 2시간의 경우 146.83 mm, 3시간의 경우 203.06 mm으로 산정되었다. 산정된 한계강우량은 지속적으로 관측되는 강우 자료의 입력을 통하여 갱신될 수 있을 것으로 보인다. 본 연구에서 제시되는 방법론을 통해 도시 배수분구별 정량적 한계강우량을 제시할 수 있을 것으로 보이며, 이는 도시 유역에서 홍수 예·경보 발령을 위한 기초자료를 제공할 수 있을 것으로 판단된다.

• The Plant Pathology Journal
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• 제30권4호
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• pp.343-354
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• 2014

Rice blast disease caused by Magnaporthe oryzae is one of the most serious diseases of cultivated rice (Oryza sativa L.) in most rice-growing regions of the world. In order to investigate early response genes in rice, we utilized the transcriptome analysis approach using a 300 K tilling microarray to rice leaves infected with compatible and incompatible M. oryzae strains. Prior to the microarray experiment, total RNA was validated by measuring the differential expression of rice defense-related marker genes (chitinase 2, barwin, PBZ1, and PR-10) by RT-PCR, and phytoalexins (sakuranetin and momilactone A) with HPLC. Microarray analysis revealed that 231 genes were up-regulated (>2 fold change, p < 0.05) in the incompatible interaction compared to the compatible one. Highly expressed genes were functionally characterized into metabolic processes and oxidation-reduction categories. The oxidative stress response was induced in both early and later infection stages. Biotic stress overview from MapMan analysis revealed that the phytohormone ethylene as well as signaling molecules jasmonic acid and salicylic acid is important for defense gene regulation. WRKY and Myb transcription factors were also involved in signal transduction processes. Additionally, receptor-like kinases were more likely associated with the defense response, and their expression patterns were validated by RT-PCR. Our results suggest that candidate genes, including receptor-like protein kinases, may play a key role in disease resistance against M. oryzae attack.

• 한국동물번식학회:학술대회논문집
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• 한국동물번식학회 2003년도 학술발표대회 발표논문초록집
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• pp.90-90
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• 2003

Circling mice were recorded to display profound deafness and a head-tossing and bidirectional circling behavior, showing an autosomal recessive mode of inheritance. In addition, the histological examination of inner ears revealed that the region around organ of Corti, spiral ganglion neurons and outer hair cells showed definite abnormality. On the other hand, a genetic linkage map was constructed in an intraspecific backcross between cir and C57BL/6J mice. The cir gene was mapped to a region between D9Mitl16/D9Mit15 and D9Mit38 on the mouse chromosome 9. Estimated distances between cir and D9Mitl16, and between cir and D9Mit38 are 0.70 $\pm$ 0.40 and 0.23 $\pm$ 0.23 cM, respectively. The markers in order was defined as follows: centromere-D9Mit182- D9Mit51/ D9Mit79/ D9Mit310- D9Mit212/ D9Mit184- D9Mit116/ D9Mit15- cir- D9Mit38- D9Mit20- D9Mit243- D9Mit16- D9Mit55/ D9Mit125- D9Mit281 Based on genetic mapping, we constructed for a YAC contig across cir region. They covered the entire region or cir and cir gene was located on between the lactotransferrin (ltf) and the macrotubule-associated protein (map4). It is known that sr gene is localized in 64cM of mouse chromosome 9. The two mouse were found to be allelic by complementation test. Recently the spinner mouse has been mapped to our cir region, and tmie gene were elucidated. And further study will be needed in circling mouse to prove tmie gene mutaiton.