• Title/Summary/Keyword: Genetic Architecture

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Prediction of golden time for recovering SISs using deep fuzzy neural networks with rule-dropout

  • Jo, Hye Seon;Koo, Young Do;Park, Ji Hun;Oh, Sang Won;Kim, Chang-Hwoi;Na, Man Gyun
    • Nuclear Engineering and Technology
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    • v.53 no.12
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    • pp.4014-4021
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    • 2021
  • If safety injection systems (SISs) do not work in the event of a loss-of-coolant accident (LOCA), the accident can progress to a severe accident in which the reactor core is exposed and the reactor vessel fails. Therefore, it is considered that a technology that provides recoverable maximum time for SIS actuation is necessary to prevent this progression. In this study, the corresponding time was defined as the golden time. To achieve the objective of accurately predicting the golden time, the prediction was performed using the deep fuzzy neural network (DFNN) with rule-dropout. The DFNN with rule-dropout has an architecture in which many of the fuzzy neural networks (FNNs) are connected and is a method in which the fuzzy rule numbers, which are directly related to the number of nodes in the FNN that affect inference performance, are properly adjusted by a genetic algorithm. The golden time prediction performance of the DFNN model with rule-dropout was better than that of the support vector regression model. By using the prediction result through the proposed DFNN with rule-dropout, it is expected to prevent the aggravation of the accidents by providing the maximum remaining time for SIS recovery, which failed in the LOCA situation.

Plant-Parasitic Nematode Genera Associated with Turfgrass in Maryland Golf Courses and Athletic Fields

  • Fereshteh Shahoveisi;Benjamin Waldo
    • The Plant Pathology Journal
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    • v.40 no.3
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    • pp.272-281
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    • 2024
  • Field surveys were conducted to assess the occurrence and diversity of plant-parasitic nematodes (PPNs) in golf courses and athletic fields across Maryland, USA, during 2022 and 2023. A total of 28 golf courses and ten athletic fields were surveyed, revealing the prevalence and abundance of 13 PPNs taxa in the region. Criconemoides was identified as the most prevalent (94.9%) and Tylenchorhynchus as the most abundant (2.3) across all samples. Central golf courses (west side of the Chesapeake Bay) exhibited a high prevalence of Criconemoides and Tylenchorhynchus, while Eastern Shore golf courses and athletic fields displayed a higher prevalence of Helicotylenchus and Criconemoides. Further, Belonolaimus longicaudatus was reported for the first time from turfgrass in Maryland, raising concerns due to its potential to cause severe damage on both cool- and warm-season turfgrass. Biodiversity analysis indicated that richness (R2) was higher in athletic fields, while diversity (H') and evenness (J') were significantly greater in golf courses. This study provides baseline information for monitoring PPNs distribution in Maryland and also for the development of effective nematode management approaches in turfgrass ecosystems.

A Study on the Management Method in Accordance with the Vegetation Structure of Geumgang Pine (Pinus densiflora) Forest in Sogwang-ri, Uljin (울진 소광리 금강소나무림 식생구조 특성에 따른 관리방안)

  • Kim, Dong-Wook;Han, Bong-Ho;Park, Seok-Cheol;Kim, Jong-Yup
    • Journal of the Korean Institute of Landscape Architecture
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    • v.50 no.1
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    • pp.1-19
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    • 2022
  • The Geumgang Pine (Pinus densiflora) Forest in Sogwang-ri, Uljin has traditionally been a pine tree protection area (prohibited forest) for timber production purposes, and is now designated and managed as a protected area for forest genetic resource conservation by the Korea Forest Service. This study, we analyzed topographical characteristics, existing vegetation, tree age, and plant community structure, and proposed a sustainable management method for the Geumgang Pine (Pinus densiflora) Forest in Sogwang-ri, Uljin for timber havesting purposes. The topographical characteristics of the target area were 36.7% ridges and 38.7% valleys; the ratio of ridges to valleys was similar, and the slopes formed 24.7% of the total area. The types of pine forest communities are divided into six types based on the progress of pine forest renewal, the competition with other species such as deciduous broadleaf trees, and the formation of layered structures. It has been confirmed that the age of the large-diameter pine trees (40~60cm in diameter) is approximately 60~70 years, which is relatively low. As a result of the analysis of the relative importance percentage and layered structure, differences depended on the progress of the pine forest renewal project, and not only the maintenance of the pine forest, but also the creation of a secondary growth forest, the density adjustment of pine trees, and the active management of competitive trees. The average basal area by the community was 12,642.1~25,424.4cm2 for the tree layer and 1.8~1,956.5cm2 for the low tree layer based on a quadrat of 400m2. The difference in the basal area appeared to depend on the size and number of trees forming the tree layer and the degree of pine forest renewal (the degree of time elapsed after thinning pine trees). The average number of species that appeared in each community was 8.7-20.3; there were many species located in valleys, and the type competes with deciduous broadleaf trees due to the lack of management. The diversity of species ranged from 0.6915-1.0942, and was evaluated as low compared to pine communities in central temperate zones. In this paper, we determined the management goals of Geumgang Pine (Pinus densiflora) Forest in Sogwang-ri, Uljin to produce timber with high economic value, and suggested efficient vegetation management for continuous afforestation, the establishment of a timber production system, and improvement of wood production as a management direction.

Development of Near-Isogenic Line of japonica Rice Cultivar Saenuri without Lipoxygenase-3 (새누리 벼 품종 배경 lipoxygenase-3 결핍 자포니카 근동질계통 개발)

  • Park, Hyun-Su;Lee, Keon-Mi;Kim, Ki-Young;Kim, Jeong-Ju;Shin, Woon-Cheol;Baek, Man-Kee;Kim, Choon-Song;Park, Seul-Gi;Lee, Chang-Min;Suh, Jung-Pil;Cho, Young-Chan
    • Korean Journal of Breeding Science
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    • v.51 no.3
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    • pp.190-200
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    • 2019
  • It is reported that the absence of lipoxygenase-3 (LOX-3) may contribute to a reduction in stale flavor after the storage of rice. To improve the quality of stored rice of the Korean japonica rice cultivar, we conducted a breeding program to develop near-isogenic rice without LOX-3 in the genetic background of Saenuri, a mega variety of Korea. In the first step of the breeding program, we used a donor parent of LOX-3 null, Daw Dam, and a recurrent japonica parent, Sindongjin, to develop HR27873-AC12 by backcross (BC1), color test for introgression of lox-3, and anther culture for rapid fixation. In the second step, we used the donor parent, HR27873-AC12, and the recurrent parent, Saenuri, to develop HR28896-31-3-1-1 by backcross (BC1), marker-assisted selection (MAS) for lox-3, and phenotypic selection (PS) for agronomic traits. Finally, in the third step, we developed HR30960-186-2-1-2-1 (Jeonju624), derived from a cross between Saenuri and HR28896-31-3-1-1, by MAS for lox-3 and PS with high selection pressure for agronomic characteristics. Jeonju624 was confirmed with the introgression of lox-3 by molecular marker. Jeonju624 was a mid-late maturing rice with similar agronomic characteristics to Saenuri, lodging tolerance with short culm, erect plant architecture, and resistance to bacterial blight and rice stripe virus. The yield components of Jeonju624 were mostly similar to Saenuri, except for the 1,000-grain weight of brown rice. The appearance of the grain of Jeonju624 was better than that of Saenuri, and the characteristics of cooked rice were similar to those of Saenuri. In the genetic background analysis using 406 KASP (Kompetitive Allele-Specific PCR) markers, Jeonju624 was confirmed to be the near-isogenic line (NIL) of Saenuri with a 95.8% recovery rate. Jeonju624 is the NIL of Saenuri without LOX-3, and overcomes the linkage drag of Daw Dam with similar agronomic characteristics and genetic background to Saenuri. Jeonju624 can be utilized as a practical cultivar to improve the quality of stored rice, breeding material for the introgression of lox-3, and genetic material to elucidate the effect of introgressed genes.

QTL Mapping of Resistance to Gray Leaf Spot in Ryegrass: Consistency of QTL between Two Mapping Populations

  • Curley, J.;Chakraborty, N.;Chang, S.;Jung, G.
    • Asian Journal of Turfgrass Science
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    • v.22 no.1
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    • pp.85-100
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    • 2008
  • Gray leaf spot (GLS) is a serious fungal disease caused by Pyricularia oryzae Cavara, recently reported on the important turf and forage species, perennial ryegrass (Lolium perenneL.). This fungus also causes rice blast, which is usually controlled by host resistance, but durability of resistance is a problem. Few instances of GLS resistance have been reported in perennial ryegrass. However, two major QTL for GLS resistance have been detected on linkage groups 3 and 6 in an Italian x perennial ryegrass mapping population. To confirm that those QTL are still detectable in the next generation and can function in a different genetic background, a resistant segregant from this population has been crossed with an unrelated susceptible perennial clone, to form a new mapping population segregating for GLS resistance. QTL analysis has been performed in the new population, using two different ryegrass field isolates and RAPD, RFLP, and SSR marker-based linkage maps for each parent. Results indicate the previously identified QTL on linkage group 3 is still significant in the new population, with LOD and percent of phenotypic variance explained ranging from 2.0 to 3.5 and 5% to 10%, respectively. Also two QTL were detected in the susceptible parent, with similar LOD and phenotypic variance explained. Although the linkage group 6 QTL was not detected, the major QTL on linkage group 3 appears to beconfirmed. These results will add to our understanding of the genetic architecture of GLS resistance in ryegrass, which will facilitate its use in perennial ryegrass breeding programs.

Mollusks Sequence Database: Version II (연체동물 전용 BLAST 서버 업데이트 (Version II))

  • Kang, Se Won;Hwang, Hee Ju;Park, So Young;Wang, Tae Hun;Park, Eun Bi;Lee, Tae Hee;Hwang, Ui Wook;Lee, Jun-Sang;Park, Hong Seog;Han, Yeon Soo;Lim, Chae Eun;Kim, Soonok;Lee, Yong Seok
    • The Korean Journal of Malacology
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    • v.30 no.4
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    • pp.429-431
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    • 2014
  • Since we reported a BLAST server for the mollusk in 2004, no work has reported the usability or modification of the server. To improve its usability, the BLAST server for the mollusk has been updated as version II (http://www.malacol.or.kr/blast) in the present study. The database was constructed by using the Intel server Platform ZSS130 dual Xeon 3.20 GHz CPU and Linux CentOS system and with NCBI WebBLAST package. We downloaded the mollusk nucleotide, amino acid, EST, GSS and mitochondrial genome sequences which can be opened through NCBI web BLAST and used them to build up the database. The updated database consists of 520,977 nucleotide sequences, 229,857 amino acid sequences, 586,498 EST sequences, 23,112 GSS and 565 mitochondrial genome sequences. Total database size is 1.2 GB. Furthermore, we have added repeat sequences, Escherichia coli sequences and vector sequences to facilitate data validation. The newly updated BLAST server for the mollusk will be useful for many malacological researchers as it will save time to identify and study various molluscan genes.

Optimization of Multi-objective Function based on The Game Theory and Co-Evolutionary Algorithm (게임 이론과 공진화 알고리즘에 기반한 다목적 함수의 최적화)

  • Sim, Kwee-Bo;Kim, Ji-Yoon;Lee, Dong-Wook
    • Journal of the Korean Institute of Intelligent Systems
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    • v.12 no.6
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    • pp.491-496
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    • 2002
  • Multi-objective Optimization Problems(MOPs) are occur more frequently than generally thought when we try to solve engineering problems. In the real world, the majority cases of optimization problems are the problems composed of several competitive objective functions. In this paper, we introduce the definition of MOPs and several approaches to solve these problems. In the introduction, established optimization algorithms based on the concept of Pareto optimal solution are introduced. And contrary these algorithms, we introduce theoretical backgrounds of Nash Genetic Algorithm(Nash GA) and Evolutionary Stable Strategy(ESS), which is the basis of Co-evolutionary algorithm proposed in this paper. In the next chapter, we introduce the definitions of MOPs and Pareto optimal solution. And the architecture of Nash GA and Co-evolutionary algorithm for solving MOPs are following. Finally from the experimental results we confirm that two algorithms based on Evolutionary Game Theory(EGT) which are Nash GA and Co-evolutionary algorithm can search optimal solutions of MOPs.

Evolutionally optimized Fuzzy Polynomial Neural Networks Based on Fuzzy Relation and Genetic Algorithms: Analysis and Design (퍼지관계와 유전자 알고리즘에 기반한 진화론적 최적 퍼지다항식 뉴럴네트워크: 해석과 설계)

  • Park, Byoung-Jun;Lee, Dong-Yoon;Oh, Sung-Kwun
    • Journal of the Korean Institute of Intelligent Systems
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    • v.15 no.2
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    • pp.236-244
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    • 2005
  • In this study, we introduce a new topology of Fuzzy Polynomial Neural Networks(FPNN) that is based on fuzzy relation and evolutionally optimized Multi-Layer Perceptron, discuss a comprehensive design methodology and carry out a series of numeric experiments. The construction of the evolutionally optimized FPNN(EFPNN) exploits fundamental technologies of Computational Intelligence. The architecture of the resulting EFPNN results from a synergistic usage of the genetic optimization-driven hybrid system generated by combining rule-based Fuzzy Neural Networks(FNN) with polynomial neural networks(PNN). FNN contributes to the formation of the premise part of the overall rule-based structure of the EFPNN. The consequence part of the EFPNN is designed using PNN. As the consequence part of the EFPNN, the development of the genetically optimized PNN(gPNN) dwells on two general optimization mechanism: the structural optimization is realized via GAs whereas in case of the parametric optimization we proceed with a standard least square method-based learning. To evaluate the performance of the EFPNN, the models are experimented with the use of several representative numerical examples. A comparative analysis shows that the proposed EFPNN are models with higher accuracy as well as more superb predictive capability than other intelligent models presented previously.

Dry matter and grain production of a near-isogenic line carrying a 'Takanari' (high yielding, Indica) allele for increased leaf inclination angle in rice with the 'Koshihikari' (Japonica) genetic background

  • San, Nan Su;Otsuki, Yosuke;Adachi, Shunsuke;Yamamoto, Toshio;Ueda, Tadamasa;Tanabata, Takanari;Ookawa, Taiichiro;Hirasawa, Tadashi
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.32-32
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    • 2017
  • To increase rice production, manipulating plant architecture, especially developing new high-yielding cultivars with erect leaves, is crucial in rice breeding programs. Leaf inclination angle determines the light extinction coefficient (k) of the canopy. Erect leaves increase light penetration into the canopy and enable dense plantings with a high leaf area index, thus increasing biomass production and grain yield. Because of erect leaves, the high-yielding indica rice cultivar 'Takanari' has smaller k during ripening than 'Koshihikari', a japonica cultivar with good eating quality. In our previous study, using chromosome segment substitution lines (CSSLs) derived from a cross between 'Takanari' and 'Koshihikari', we detected seven quantitative trait loci (QTLs) for leaf inclination angle on chromosomes 1 (two QTLs), 2, 3, 4, 7, and 12. In this study, we developed a near-isogenic line (NIL-3) carrying a 'Takanari' allele for increased leaf inclination angle on chromosome 3 in the 'Koshihikari' genetic background. We compared k, dry matter production, and grain yield of NIL-3 with those of 'Koshihikari' in the field from 2013 to 2016. NIL-3 had higher inclination angles of the flag, second, and third leaves at full heading and 3 (- 4) weeks after full heading and smaller k of the canopy at the ripening stage. Biomass at full heading and leaf area index at full heading and at harvest did not significantly differ between NIL-3 and 'Koshihikari'. However, biomass at harvest was significantly greater in NIL-3 than in 'Koshihikari' due to a higher net assimilation rate at the ripening stage. The photosynthetic rates of the flag and third leaves did not differ between NIL-3 and Koshihikari at ripening. Grain yield was higher in NIL-3 than 'Koshihikari'. Higher panicle number per square meter in NIL-3 contributed to the higher grain yield of NIL-3. We conclude that the QTL on chromosome 3 increases dry matter and grain production in rice by increasing leaf inclination angle.

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Member Sizing Optimization for Seismic Design of the Inverted V-braced Steel Frames with Suspended Zipper Strut (Zipper를 가진 역V형 가새골조의 다목적 최적내진설계기법)

  • Oh, Byung-Kwan;Park, Hyo-Seon;Choi, Se-Woon
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.29 no.6
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    • pp.555-562
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    • 2016
  • Seismic design of braced frames that simultaneously considers economic issues and structural performance represents a rather complicated engineering problem, and therefore, a systematic and well-established methodology is needed. This study proposes a multi-objective seismic design method for an inverted V-braced frame with suspended zipper struts that uses the non-dominated sorting genetic algorithm-II(NSGA-II). The structural weight and the maximum inter-story drift ratio as the objective functions are simultaneously minimized to optimize the cost and seismic performance of the structure. To investigate which of strength- and performance-based design criteria for braced frames is the critical design condition, the constraint conditions on the two design methods are simultaneously considered (i.e. the constraint conditions based on the strength and plastic deformation of members). The linear static analysis method and the nonlinear static analysis method are adopted to check the strength- and plastic deformation-based design constraints, respectively. The proposed optimal method are applied to three- and six-story steel frame examples, and the solutions improved for the considered objective functions were found.