• Title/Summary/Keyword: Genetic Architecture

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The Role of High-throughput Transcriptome Analysis in Metabolic Engineering

  • Jewett, Michael C.;Oliveira, Ana Paula;Patil, Kiran Raosaheb;Nielsen, Jens
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.10 no.5
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    • pp.385-399
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    • 2005
  • The phenotypic response of a cell results from a well orchestrated web of complex interactions which propagate from the genetic architecture through the metabolic flux network. To rationally design cell factories which carry out specific functional objectives by controlling this hierarchical system is a challenge. Transcriptome analysis, the most mature high-throughput measurement technology, has been readily applied In strain improvement programs in an attempt to Identify genes involved in expressing a given phenotype. Unfortunately, while differentially expressed genes may provide targets for metabolic engineering, phenotypic responses are often not directly linked to transcriptional patterns, This limits the application of genome-wide transcriptional analysis for the design of cell factories. However, improved tools for integrating transcriptional data with other high-throughput measurements and known biological interactions are emerging. These tools hold significant promise for providing the framework to comprehensively dissect the regulatory mechanisms that identify the cellular control mechanisms and lead to more effective strategies to rewire the cellular control elements for metabolic engineering.

Conceptual Design Optimization of Tensairity Girder Using Variable Complexity Modeling Method

  • Yin, Shi;Zhu, Ming;Liang, Haoquan;Zhao, Da
    • International Journal of Aeronautical and Space Sciences
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    • v.17 no.1
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    • pp.29-36
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    • 2016
  • Tensairity girder is a light weight inflatable fabric structural concept which can be used in road emergency transportation. It uses low pressure air to stabilize compression elements against buckling. With the purpose of obtaining the comprehensive target of minimum deflection and weight under ultimate load, the cross-section and the inner pressure of tensairity girder was optimized in this paper. The Variable Complexity Modeling (VCM) method was used in this paper combining the Kriging approximate method with the Finite Element Analysis (FEA) method, which was implemented by ABAQUS. In the Kriging method, the sample points of the surrogate model were outlined by Design of Experiment (DOE) technique based on Optimal Latin Hypercube. The optimization framework was constructed in iSIGHT with a global optimization method, Multi-Island Genetic Algorithm (MIGA), followed by a local optimization method, Sequential Quadratic Program (SQP). The result of the optimization gives a prominent conceptual design of the tensairity girder, which approves the solution architecture of VCM is feasible and efficient. Furthermore, a useful trend of sensitivity between optimization variables and responses was performed to guide future design. It was proved that the inner pressure is the key parameter to balance the maximum Von Mises stress and deflection on tensairity girder, and the parameters of cross section impact the mass of tensairity girder obviously.

Photovoltaic System Allocation Using Discrete Particle Swarm Optimization with Multi-level Quantization

  • Song, Hwa-Chang;Diolata, Ryan;Joo, Young-Hoon
    • Journal of Electrical Engineering and Technology
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    • v.4 no.2
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    • pp.185-193
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    • 2009
  • This paper presents a methodology for photovoltaic (PV) system allocation in distribution systems using a discrete particle swarm optimization (DPSO). The PV allocation problem is in the category of mixed integer nonlinear programming and its formulation may include multi-valued dis-crete variables. Thus, the PSO requires a scheme to deal with multi-valued discrete variables. This paper introduces a novel multi-level quantization scheme using a sigmoid function for discrete particle swarm optimization. The technique is employed to a standard PSO architecture; the same velocity update equation as in continuous versions of PSO is used but the particle's positions are updated in an alternative manner. The set of multi-level quantization is defined as integer multiples of powers-of-two terms to efficiently approximate the sigmoid function in transforming a particle's position into discrete values. A comparison with a genetic algorithm (GA) is performed to verify the quality of the solutions obtained.

Estimation of Wind Turbine Power Generation using Cascade Architectures of Fuzzy-Neural Networks (종속형 퍼지-뉴럴 네트워크를 이용한 풍력발전기 출력 예측)

  • Kim, Seong-Min;Lee, Dong-Hoon;Jang, Jong-In;Won, Jung-Cheol;Kang, Tae-Ho;Yim, Yeong-Keun;Han, Chang-Wook
    • Proceedings of the KIEE Conference
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    • 2009.07a
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    • pp.1098_1099
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    • 2009
  • In this paper, we present the estimation of wind turbine power generation using Cascade Architectures of Fuzzy Neural Networks(CAFNN). The proposed model uses the wind speed average, the standard deviation and the past output power as input data. The CAFNN identification process uses a 10-min average wind speed with its standard deviation. The method for rule-based fuzzy modeling uses Gaussian membership function. It has three fuzzy variables with three modifiable parameters. The CAFNN's configuration has three Logic Processors(LP) that are constructed cascade architecture and an effective optimization method uses two-level genetic algorithm. First, The CAFNN is trained with one-day average input variables. Once the CAFNN has been trained, test data are used without any update. The main advantage of using CAFNN is having simple structure of system with many input variables. Therefore, The proposed CAFNN technique is useful to predict the wind turbine(WT) power effectively and hence that information will be helpful to decide the control strategy for the WT system operation and application.

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Development of a Segregating Population with Biological Efficiency in Agaricus bisporus

  • Oh, Youn-Lee;Sonnenberg, Anton S.M.;Baars, Johan J.P.;Jang, Kab-Yeul;Oh, Min ji;Im, Ji-Hoon;Kong, Won-Sik
    • The Korean Journal of Mycology
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    • v.45 no.4
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    • pp.328-335
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    • 2017
  • In this study, we made a population with high biological efficiency (BE) to investigate the complex genetic architecture of yield-related traits in Agaricus bisporus. MB-013 crossed between bisp 015-p2 and bisp 034-p2, had high BE. Additionally MB-013 was an intervarietal hybrid that intercrosses with A. bisporus var. burnettii, bisp 015, and A. bisporus var. bisporus, bisp 034. One hundred and seventy homokaryons were selected using the cleaved amplified polymorphic sequence (CAPS) markers (PIN primer/HaeIII) from 300 single spore isolates (SSIs). One hundred $BC_1F_1$ hybrids were obtained by crossing the homokaryons of MB-013 with bisp15-p1. The population of 100 BC1F1 hybrids is suitable for analyses of BE.

A Study about City Reproduction and the House Housing Complex Establishment Idea - For environment activation avid Long Life Housing supply idea of the system - (도시재생과 주거단지 확립방안에 관한 연구 - 환경 친화적인 장수명 공동주택공급의 제도적 활성화방안에 대하여 -)

  • Yoon, Sang Cho;Lee, Joo Hyung
    • KIEAE Journal
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    • v.8 no.4
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    • pp.29-36
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    • 2008
  • The rapid industrialization since the 1960s has caused considerable changes in the appearance of Korean cities. The huge demand and cityward tendency derived from the increase of population with such the expansion from 9 millions in 1960 to 43 millions in 2003, have resulted in number of problems such as the falling-off in the quality of life, amenity, and safety. And above all, the urban identities is not to be found obviously in the cities. With regard to these problems, the re-creation of cities should be emphasized to make environmental, economical, and social improvements and to restore human-oriented activities. In the course of making new improvements cities need to preserve the characteristics and maintain the concordance with their environments. In other words, the restoration of cities ought to be made in the aspect of continuity, which means the accession of genetic factors inherent in cities. In this background, concerning about the system on apartment house especially relating to environmentally sound restoration and comparing with that of Japan, this study proposes the direction needed in the development of urban space.

Vascular Plants of Hyangro-bong in Gangwon-do, Korea

  • Kwon, Mi Jeong;Han, Gab-Soo
    • Journal of Forest and Environmental Science
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    • v.31 no.2
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    • pp.136-148
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    • 2015
  • Hyangro-bong is located on the northern side of the civilian access control line and therefore has gone through natural ecological succession without human interference. Currently, it forms a distinctive natural ecosystem in which rare wild animals and plants are various. It is located in the Baekdudaegan mountain system and plays an ecologically important role as a bridge that connects the Geumgang mountain and Seorak mountain. This study investigated the flora of the eastern parts, Forest Genetic Resources Reserve Area, of Hyangro-bong. A total of 363 vascular plants that belonged to 77 families, 206 genera, 310 species, 3 subspecies, and 47 varieties were found in the study area. Rare and endangered plants identified in this study included the critically endangered Swertia wilfordii and endangered Irisuniflora var. caricina. Furthermore, 4 vulnerable species, Hanabusaya asiatica, Codonopsis pilosula, Leontopodium japonicum, and Taxus cuspidata, were found. A total of 7 families and 14 taxa including Aconitum pseudolaeve and Clematis fusca var. coreana were confirmed as endemic plants. Naturalized plants belonging to 4 families, 11 genera, and 13 species were distributed along the Hyangro-bong forest roads.

Development of Concurrent Engineering System for Design of Composite Structures (복합재 구조물의 설계를 위한 동시공학 시스템의 개발)

  • ;;;H.T.Hahn
    • Composites Research
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    • v.12 no.6
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    • pp.43-52
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    • 1999
  • This paper explains the development of a concurrent engineering system for the rlesign of composite structures. The concurrent engineering system is developed to meet the demand for the better quality products with lower production cost and time. In this study, to compose the architecture of concurrent engineering system, the commercial and noncommercial programs related to design and analysis of composite structures are surveyed and classified. The concurrent engineering system is including various design modules such as design/analysis of composite structures using CLPT and FEM, buckling and post bucking analysis, thermo-elastic analysis of carbon-carbon composite, and optimum design using expert system and genetic algorithm. For the integration and management of softwares, the concurrent engineering system is realized by Microsoft visual $C++{^\circledR}$ that provide multi-tasking and graphic user interface environment.

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Multi-objective optimization design for the multi-bubble pressure cabin in BWB underwater glider

  • He, Yanru;Song, Baowei;Dong, Huachao
    • International Journal of Naval Architecture and Ocean Engineering
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    • v.10 no.4
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    • pp.439-449
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    • 2018
  • In this paper, multi-objective optimization of a multi-bubble pressure cabin in the underwater glider with Blended-Wing-Body (BWB) is carried out using Kriging and the Non-dominated Sorting Genetic Algorithm (NSGA-II). Two objective functions are considered: buoyancy-weight ratio and internal volume. Multi-bubble pressure cabin has a strong compressive capacity, and makes full use of the fuselage space. Parametric modeling of the multi-bubble pressure cabin structure is automatic generated using UG secondary development. Finite Element Analysis (FEA) is employed to study the structural performance using the commercial software ANSYS. The weight of the primary structure is determined from the volume of the Finite Element Structure (FES). The stress limit is taken into account as the constraint condition. Finally, Technique for Ordering Preferences by Similarity to Ideal Solution (TOPSIS) method is used to find some trade-off optimum design points from all non-dominated optimum design points represented by the Pareto fronts. The best solution is compared with the initial design results to prove the efficiency and applicability of this optimization method.

Algorithm and Architecture of Hybrid Fuzzy Neural Networks (하이브리드 퍼지뉴럴네트워크의 알고리즘과 구조)

  • 박병준;오성권;김현기
    • 제어로봇시스템학회:학술대회논문집
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    • 2000.10a
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    • pp.372-372
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    • 2000
  • In this paper, we propose Neuro Fuzzy Polynomial Networks(NFPN) based on Polynomial Neural Network(PNN) and Neuro-Fuzzy(NF) for model identification of complex and nonlinear systems. The proposed NFPN is generated from the mutually combined structure of both NF and PNN. The one and the other are considered as the premise part and consequence part of NFPN structure respectively. As the premise part of NFPN, NF uses both the simplified fuzzy inference as fuzzy inference method and error back-propagation algorithm as learning rule. The parameters such as parameters of membership functions, learning rates and momentum coefficients are adjusted using genetic algorithms. As the consequence part of NFPN, PNN is based on Group Method of Data Handling(GMDH) method and its structure is similar to Neural Networks. But the structure of PNN is not fixed like in conventional Neural Networks and self-organizing networks that can be generated. NFPN is available effectively for multi-input variables and high-order polynomial according to the combination of NF with PNN. Accordingly it is possible to consider the nonlinearity characteristics of process and to get better output performance with superb predictive ability. In order to evaluate the performance of proposed models, we use the nonlinear function. The results show that the proposed FPNN can produce the model with higher accuracy and more robustness than any other method presented previously.

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