• 식물분류학회지
• /
• 제47권1호
• /
• pp.11-22
• /
• 2017

Prangos fedtschenkoi (Regel et Schmalh.) Korovin (Apiaceae) is an endemic species for mountainous Middle Asia, which is both a rare and useful plant. Organic extractions from this species are being used in pharmaceutics and cosmetology. In recent years, P. fedtschenkoi distribution area has considerably decreased, presumably, resulting from human activities such as agriculture, construction works, overgrazing and collection from wild for pharmaceutic purposes. Six populations were found in Uzbekistan and their genetic divergence and differentiation were studied with 10 inter-simple sequence repeat (ISSR) markers, selected out of 101. Totally 166 amplified ISSR fragments (loci) were revealed, of which 164 were polymorphic. Relatively moderate level of polymorphism was found at population level with polymorphic bands ranging from 27.71% to 47.59%. Mean P = 39.05%, $N_a=1.40$, $N_e=1.25$, S.I. = 0.21, and $H_e=0.14$ were revealed for all loci across six populations. AMOVA showed higher variation among populations (62%) than within them (38%). The Bayesian model determined 5 clusters, or genetic groups. The posteriori distribution of the Theta II estimator detected full model identifying high inbreeding, intensified by low gene flow (Nm = 0.3954). Mantel test confined population 6 as distinct cluster corresponding to geographic remoteness (R = 0.5137, $p{\leq}0.005$). Results were used as the bases for developing conserve measures to restore populations.

• Journal of Ginseng Research
• /
• 제45권6호
• /
• pp.734-743
• /
• 2021

Background: The underlying mechanisms of the potential tumor-suppressive effects of ginsenoside Rh2 are complex. N6-methyladenosine (m6A) RNA methylation is usually dysregulated in cancer. This study explored the regulatory effect of ginsenoside Rh2 on m6A RNA methylation in cancer. Methods: m6A RNA quantification and gene-specific m6A RIP-qPCR assays were applied to assess total and gene-specific m6A RNA levels. Co-immunoprecipitation, fractionation western blotting, and immunofluorescence staining were performed to detect protein interactions and distribution. QRT-PCR, dual-luciferase, and ChIP-qPCR assays were conducted to check the transcriptional regulation. Results: Ginsenoside Rh2 reduces m6A RNA methylation and KIF26B expression in a dose-dependent manner in some cancers. KIF26B interacts with ZC3H13 and CBLL1 in the cytoplasm of cancer cells and enhances their nuclear distribution. KIF26B inhibition reduces m6A RNA methylation level in cancer cells. SRF bound to the KIF26B promoter and activated its transcription. SRF mRNA m6A abundance significantly decreased upon KIF26B silencing. SRF knockdown suppressed cancer cell proliferation and growth both in vitro and in vivo, the effect of which was partly rescued by KIF26B overexpression. Conclusion: ginsenoside Rh2 reduces m6A RNA methylation via downregulating KIF26B expression in some cancer cells. KIF26B elevates m6A RNA methylation via enhancing ZC3H13/CBLL1 nuclear localization. KIF26B-SRF forms a positive feedback loop facilitating tumor growth.

• 한국작물학회:학술대회논문집
• /
• 한국작물학회 2022년도 추계학술대회
• /
• pp.225-225
• /
• 2022

Rice is a major food crop consumed by approximately half of the world's population. Heading date is one of the major agronomic traits and has a wide impact on the productivity and quality of rice. Recently, shortening the growth period of rice through modulating heading date has been emphasized as one of the most effective strategies for reducing methane emissions from paddy fields. OsPRR37, a major heading date gene in rice, represses flowering under both short-day and long-day conditions. Plants carrying the loss-of-function alleles of OsPRR37 have been reported to flower approximately seven days and 20 days earlier than those carrying the functional alleles in short day and long day conditions, respectively. In this study, we investigated the nucleotide sequence variation existing in the exonic regions of OsPRR37 and catalogued the allelic distribution in 208 Korean rice cultivars. We used four sets of primers for amplifying and sequencing the eight exons of OsPRR37. As a result, two types of loss-of-function alleles and four types of functional alleles were found in 208 Korean rice cultivars. Interestingly, only three cultivars (Jinbuolbyeo, Jinseolchal, and Mimyeon) carried loss-of-function alleles while 205 carried functional alleles, indicating that OsPRR37 loss-of-function alleles have been used very rarely in Korean rice breeding programs. To generate useful information for the development of early-maturing rice cultivars, our future work will focus on analyzing the effect of different OsPRR37 alleles on heading date and other major agronomic traits.

• 생명과학회지
• /
• 제24권10호
• /
• pp.1092-1101
• /
• 2014

본 연구에서는 우리나라 설악산 지역을 중심으로 신갈나무와 졸참나무 두 종의 수직분포 양상을 관찰하고, 두 종간의 교잡이입 및 유전자 전달 가능성을 플라보노이드 분석을 통해 추론하고자 하였다. 중부지방인 설악산의 신갈나무와 졸참나무의 수직분포는 남부지방인 지리산에서와는 차이가 난다. 설악산의 경우, 해발 100 m 이상 거의 전 고도에서 신갈나무가 나타나나 졸참나무는 해발 500 m 이상에서는 드물게 나타나며 500 m 이하에서 신갈나무와 혼생한다. 지리산의 경우, 졸참나무의 수직 분포 범위는 해발 0-1,200 m로 설악산에 비해 훨씬 넓으며, 신갈나무는 높은 해발고도에서는 순림을 이루지만 해발 1,000 m 이하에서는 고도가 낮아질수록 빈도가 낮아지고 해발 300 m 이하에서는 거의 분포하지 않는다. 전반적으로 우리나라에서 신갈나무는 높은 고도에서, 졸참나무는 낮은 고도에서 생육하나 상당한 범위의 고도 구간에서 두 종은 혼생한다. 설악산 지역의 신갈나무와 졸참나무 32개체와 지리산 고지대 및 저지대에 분포하는 신갈나무, 졸참나무 각 1개체 등 총 34개체를 대상으로 잎의 플라보노이드 성분을 분석한 결과, 이들로부터 총 24종류의 서로 다른 화합물이 분리, 동정되었다. 이들 플라보노이드 화합물은 모두 flavonol인 kaempferol, quercetin, myricetin 및 isorhamnetin에 당이 결합된 flavonol glycoside이었으며, 이 중 5개는 acylated flavonoid compound이다. 이들 중 kaempferol 3-O-glucoside, quercetin 3-O-glucoside와 quercetin 3-O-galactoside 및 이들의 acylated compounds가 주요 성분으로 두 종의 모든 개체에서 나타났다. 신갈나무의 플라보노이드 조성은 acylated kaempferol 3-O-glucoside, acylated quercetin 3-O-galactoside 및 acylated quercetin 3-O-glucoside가 다량 나타나고, 졸참나무에서는 나타나지 않는 diglycoside인 quercetin 3-O-arabinosylglucoside가 분포하는 특징을 가진다. 졸참나무의 flavonoid 조성은 3개의 rhamnosyl flavonol compounds가 전체 졸참나무 개체에 걸쳐서 나타나고 또한 이들 compound가 신갈나무에 비해 다량으로 나타나는 특징을 갖는다. 신갈나무와 졸참나무 두 종간에는 이러한 정량 정성적인 플라보노이드 조성 차이와 함께 소량으로 분포하는 몇몇 compound들에 있어서 정성적인 차이도 나타나 두 종은 플라보노이드 조성에 있어 뚜렷이 구분된다. 한편, 두 종의 플라보노이드 조성은 고도에 따라 종내 개체 간 변이가 있으며, 동소적으로 분포하는 두 종 개체들의 플라보노이드 조성은 대체로 정량적 또는 정성적으로 상대 종의 플라보노이드 조성을 닮는 경향이 있었다. 이러한 현상은 두 종간에 교잡이입을 통한 유전자 교환이 일어나고 있음을 강하게 암시한다.

• Clinical and Experimental Pediatrics
• /
• 제54권8호
• /
• pp.335-339
• /
• 2011

Purpose: Hyperhomocysteinemia is known as a risk factor for atherosclerosis. Preclinical arteriosclerosis is noted and premature atherosclerosis is known to be accelerated in Kawasaki disease (KD) patients. Genetic polymorphisms in the 5,10-methylenetetrahydrofolate reductase (MTHFR) gene result in elevated plasma homocysteine concentrations and are known to be associated with the development of coronary artery disease. Our hypothesis is that single nucleotide polymorphisms (SNPs) of the MTHFR gene are related to the development of KD and coronary artery lesions (CALs). Methods: For this study, we selected 3 candidate single nucleotide polymorphisms (SNPs) (rs2274976, rs1801131, and rs1801133) of MTHFR. These SNPs are located on chromosome 1p36.3. We included 101 KD patients and 306 healthy adults as controls in this study. CALs were seen in 38 patients. Genotypes of the selected SNPs were determined by direct sequencing and analyzed with SNPAlyze. Results: The genetic distribution and allelic frequency of the 3 MTHFR SNPs (rs2274976, rs1801131, and rs1801133) were not significantly different in patients with KD compared to the control group (P=0.71, 0.17, and 0.96, respectively). There was no difference in the genetic distribution of the MTHFR SNPs between the normal control group and the CAL group (P=0.43, 0.39, 0.52 respectively). Conclusion: The genetic distribution of the MTHFR SNPs (rs2274976, rs1801131, and rs1801133) was not different in the KD group compared to the control group. In addition, the genetic distribution of these SNPs was not different in the CAL group compared to the control group in the Korean population.

• Molecules and Cells
• /
• 제23권3호
• /
• pp.349-356
• /
• 2007

Simple Sequence Repeats (SSRs) represent short tandem duplications found within all eukaryotic organisms. To examine the distribution of SSRs in the genome of Brassica rapa ssp. pekinensis, SSRs from different genomic regions representing 17.7 Mb of genomic sequence were surveyed. SSRs appear more abundant in non-coding regions (86.6%) than in coding regions (13.4%). Comparison of SSR densities in different genomic regions demonstrated that SSR density was greatest within the 5'-flanking regions of the predicted genes. The proportion of different repeat motifs varied between genomic regions, with trinucleotide SSRs more prevalent in predicted coding regions, reflecting the codon structure in these regions. SSRs were also preferentially associated with gene-rich regions, with peri-centromeric heterochromatin SSRs mostly associated with retrotransposons. These results indicate that the distribution of SSRs in the genome is non-random. Comparison of SSR abundance between B. rapa and the closely related species Arabidopsis thaliana suggests a greater abundance of SSRs in B. rapa, which may be due to the proposed genome triplication. Our results provide a comprehensive view of SSR genomic distribution and evolution in Brassica for comparison with the sequenced genomes of A. thaliana and Oryza sativa.

• Journal of Korean Dental Science
• /
• 제6권2호
• /
• pp.41-49
• /
• 2013

Purpose: This study sought to compare the elemental constitution, morphological characteristics, particle size distribution, biocompatibility, and mineralization potential of Ortho MTA (OMTA) and ProRoot MTA (PMTA). Materials and Methods: OMTA and PMTA were compared using energy-dispersive spectrometry, particle size analysis, and scanning electron microscopy. The biocompatibility and mineralization-related gene expression (osteonectin and osteopontin) of both MTAs were also compared using methylthiazol tetrazolium assay and reverse transcription-polymerization chain reaction analysis, respectively. The results were analyzed by Kruskal-Wallis test with Bonferroni correction. P-value of <0.05 was considered significant. Result: The morphology of OMTA powders was similar to that of PMTA. The constituent elements of both MTAs were calcium, silicon, and aluminum. The mean particle sizes of OMTA and PMTA were 4.60 and 3.34 mm, respectively. Both MTAs had equally favorable in vitro biocompatibility and affected the messenger RNA expression of osteonectin and osteopontin. Conclusion: Within the limitations of this study, OMTA could be a promising biomaterial in clinical endodontics.

• Asian Pacific Journal of Cancer Prevention
• /
• 제13권2호
• /
• pp.665-669
• /
• 2012

Aim: The distribution of DNA repair gene XRCC1 and XRCC3 genotypes was used to assess the potential influence of genetic polymorphisms on risk of colorectal cancer, and interactions with other factors. Methods: a 1:2 matched case-control study was conducted with 485 cases and 970 controls. XRCC1 and XRCC2 genotype polymorphisms were based upon duplex polymerase-chain-reaction with the confronting-two-pairprimer (PCR-CTPP) method. Results:The XRCC1 399Cln allele polymorphism was found to be associated with an increased colorectal cancer risk, while an non-significant inversely association was noted for XRCC3 241Thr/Thr genotype. We also found that individuals with the XRCC1 399 Gln and XRCC3 241Met alleles had an elevated risk, while XRCC3241Thr/Thr was proctective. Conclusion: This study is the first to provide evidence of importance of XRCC1 and XRCC3 gene polymorphisms for risk of colorectal cancer in the Chinese population.

• 한국어병학회지
• /
• 제28권2호
• /
• pp.99-107
• /
• 2015

Despite its economic importance as an aquaculture species, the molecular and genetic information regarding physiologically important elements in rock bream (Oplegnathus fasciatus) is not completely understood. Rab proteins play a vital role in cellular mechanisms and immunity as one of the key regulators of membrane trafficking. In this investigation, a Rab gene, named as RbRab-5C-like, was identified from Oplegnathus fasciatus. RbRab-5C-like protein exhibited high homology with Rab proteins of other species and possessed signature characteristics of Rab proteins with four conserved cysteine residues. Phylogenetic analysis showed that RbRab-5C-like clustered with other fish counterparts. The RbRab-5C-like genomic sequence possesses six exons and five introns. Transcriptional analysis revealed that RbRab-5C-like was ubiquitously expressed in all examined tissues with the highest expression occurring in the liver. While the structural and homologic characteristics of RbRab-5C-like suggest a strong conservation of this element in different species, its mRNA distribution implies a wide range of biological significance in rock bream.

• 한국환경보건학회지
• /
• 제29권1호
• /
• pp.1-7
• /
• 2003

서울에 위치한 20개 종합병원의 중환자실, 일반병동 입원실, 환자대기실과 병원 실외 4곳 공기중의 일반 세균수와 곰팡이수를 측정하였으며, 기회 감염균을 검출하였다. 97-410 cfu/㎥의 일반세균수와 37-77 cfu/㎥의 진균이 검출되었으며 중환자실이 가장 낮은 미생물의 오염도를 보였으며 환자대기실이 가장 높은 오염도를 나타내었다. 18종의 진균이 분리되었으며 Aspergillus spp.가 가장 높은 빈도로 검출되었으며, 그 다음으로 Penicillium, Alternaria, Cladosporium 속 등이 검출되었다. Staphylococcus spp. 중에서는 S. haemolyticus와 S. epidermis가 가장 높은 빈도로 검출되었으며 검출된 Staphylococcus spp. 중 47%가 중환자실에서 검출되었다.