• Journal of Ecology and Environment
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• 제47권3호
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• pp.118-133
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• 2023

Background: Free-living amoebae (FLA) are widely distributed in freshwater, seawater, soil, and extreme environments, and play a critical role as feeders on diverse preys in the ecosystem. Also, some FLA can become opportunistic pathogens in animals including humans. The taxa Amoebozoa and Heterolobosea are important amoeboid groups associated with human pathogens. However, the identification and habitat of amoebae belonging to Amoebozoa and Heterolobosea remain poorly reported in the Republic of Korea. This study highlights the first record for identification and source of four amoebae including putative pathogens in the Republic of Korea. Results: In the present study, four previously reported FLA were isolated from freshwaters in Sangju Gonggeomji Reservoir (strain GO001), one of the largest reservoirs during the Joseon Dynasty period, and along the Nakdong River, the largest river in the Republic of Korea (strains NR5-2, NR12-1, and NR14-1) for the first time. Microscopic observations and 18S rDNA phylogenetic trees revealed the four isolated strains to be Acanthamoeba polyphaga (strains NR5-2 and NR12-1), Tetramitus waccamawensis (strain GO001), and Naegleria australiensis (strain NR14-1). Strains NR5-2 and NR12-1 might be the same species and belonged to the morphological Group 2 and the T4 genotype of Acanthamoeba. Strain GO001 formed a clade with T. waccamawensis in 18S rDNA phylogeny, and showed morphological characteristics similar to previously recorded strains, although the species' flagellate form was not observed. Strain NR14-1 had the typical morphology of Naegleria and formed a strongly supported clade with previously recorded strains of N. australiensis in phylogenetic analysis of 18S rDNA sequences. Conclusions: On the bases of morphological and molecular analyses, four strains of FLA were newly observed and classified in the Republic of Korea. Three strains belonging to the two species (A. polyphaga and N. australiensis) isolated from the Nakdong River have the potential to act as opportunistic pathogens that can cause fatal diseases (i.e. granulomatous amoebic encephalitis, Acanthamoeba Keratitis, and meningoencephalitis) in animals including humans. The Nakdong River in the Republic of Korea may provide a habitat for potentially pathogenic amoebae, but additional research is required to confirm the true pathogenicity of these FLA now known in the Republic of Korea.

• 한국환경생태학회지
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• 제35권5호
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• pp.503-524
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• 2021

배스(Micropterus salmoides)는 수생태계에서 최상위단계에 위치하는 생태계교란 어종으로 심각한 담수생태계의 불균형을 초래하고 있다. 배스의 퇴치 및 관리를 위한 다양한 시도를 하고 있지만 효과적인 방안은 없는 상황이므로 배스의 고유한 특성에 기반한 개체군 감소의 효율성을 극대화할 수 있는 방식을 모색하였다. 본 연구에서는 배스의 Transcriptom 분석으로 Unigene contigs는 182,887개, 그리고 정자-난자 인식 단백질인 IZUMO1과 Zona pellucida sperm-binding protein의 유전자에서 CRISPR/Cas9 system을 적용할 최종 Target sequence는 12종을 산출하였다. 각 Target sequence를 인식할 수 있는 12종의 sgRNA를 합성한 후 후속 연구에 사용할 12종의 Cas9-sgRNA ribonucleoprotein (RNP) complex를 제작하였다. 본 연구에서는 차세대염기서열 분석법으로 정자-난자 인식 단백질을 암호화하는 유전자를 탐색하였고, CRISPR/Cas9 system으로 유전자를 편집하여 번식행동은 하지만 수정란을 형성하지 못하는 생식세포를 생산하는 불임개체를 유도하기 위한 조성물 개발 과정을 확립하였다. 그리고 배스와 동일한 수계에 있는 고유 생물종의 서식에는 영향을 미치지 않는 생태교란종 관리 방안으로서의 유용성을 검증하기 위한 후속 연구의 귀중한 기초 자료를 확보하는데 기여했다고 판단된다.

• 농업과학연구
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• 제50권2호
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• pp.257-270
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• 2023

논(paddy) 환경은 습지로 분류되며 담수환경에서 매우 많은 비율을 차지하고 있다. 또한 많은 수서곤충류 및 양서파충류 유생의 서식지 및 산란 장소로써 생태학적으로 매우 중요하다. 하지만 기후변화 및 무분별한 농약 살포 등으로 인해 논 생태계는 지속적으로 위협받고 있다. 따라서 향후 훼손된 논 생태계를 복원하기 위해서는 복원 기준이 될 수 있는 논 생태계 서식 생물들의 정보가 필요하다. 환경유전자 metabarcoding 분석법은 성체 생활시기가 다르거나 성충으로 우화하여 대상 생태계에서 더 이상 발견할 수 없는 분류군까지 존재 여부를 간접적으로 파악할 수 있기 때문에 논 생태계에 서식하는 많은 생물들의 정보를 축적하는데 매우 효과적이다. 본 연구에서도 4종의 개구리와 9종의 수서곤충 유전자가 발견되었으며, 일부 분류군은 현장에서 개체가 직접 발견되었다. 많은 수의 분류군이 DNA 탐색에서만 발견되었으며, 전통적인 조사방법은 매우 제한적인 분류군만을 확인할 수 있었다. 이러한 eDNA 기반의 논 생물탐색은 강력한 분석 해상도 때문에 농업 생태계 생물다양성 조사에서 활용가치가 매우 높을 것으로 판단된다.

• 생태와환경
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• 제41권4호
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• pp.431-440
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• 2008

Turbid water or suspended sediment is associated with negative effects on aquatic organisms; fish, aquatic invertebrate, and periphyton. Effects of turbid water on fish differ depending on their developmental stage and a level of turbidity. Low turbid water may cause feeding and predation rates, reaction distance, and avoidance in fish, and it could make fish to die under high turbidity and long period. Therefore, it is very important to find out how turbid water or suspended sediment can affect fish in domestic watersheds. The objectives of this study were 1) to introduce international case studies and their standards to deal with suspended sediment, 2) to determine acute toxicity in 4 major freshwater fishes, and 3) to determine in relation to adverse effect of macroinvertebrates and fish. Impacts of turbid water on fish can be categorized into direct and indirect effects, and some factors such as duration and frequency of exposure, toxicity, temperature, life stage of fish, size of particle, time of occurrence, availability of and access to refugia, etc, play important role to decide magnitude of effect. A review of turbidity standard in USA, Canada, and Europe indicated that each standard varied with natural condition, and Alaska allowed liberal increase of turbidity over natural conditions in streams. Even though acute toxicity with four different species did not show any fatal effect, it should be considered to conduct a chronic test (long-term) for more detailed assessment. Compared to the control, dominance index of macroinvertebrates was greater in the turbid site, whereas biotic index, species diversity index, species richness index, and ecological score were smaller in the turbid site. According to histopathological analysis with gills of macroinvertebrate and fishes, morphological and physiological modification of gills due to suspended sediments can cause disturbance of respiration, excretion and secretion. In conclusion, in order to maintain good and healthy aquatic ecosystem, it is the best to minimize or prevent impact by occurrence of turbid water in stream and reservoir. We must make every effort to maintain and manage healthy aquatic ecosystem with additional investigation using various assessment tools and periodic biomonitoring of fish.

• 생태와환경
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• 제41권4호
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• pp.541-546
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• 2008

The purpose of this study was to evaluate ecosystem health effect in the physiological levels, based on ethoxyresorufin-O-deethylase (EROD) and total oxyradical scavenging capacity (TOSC) assays using sentinel fish species. We collected fish samples of Zacco platypus in May 2008 from 3 sampling sites including upstream, midstream, and downstream of the Gap Stream. EROD activity was averaged 4.54 in the downstream, 2.7 fold higher than upstream and indicated that stream condition was degraded along with longitudinal gradient from up to downstream. Downstream, especially was significantly increased (p < 0.01) so that indicated various pollutants including nutrient enrichment and toxicant exposure from the point sources, wastewater treatment plant and industrial complex may impact to the stream condition. In the mean time, TOSC assays showed higher in the midstream than other sites, but the values were not significant, compared to the previous report on oxidative stress. Overall results indicated that our approaches applying two biomarkers can be effectively used for diagnosis of the physiological levels in an integrative stream health assessments and can be applied as useful pre-warning techniques as a biochemical alarm system of organic pollutions.

• 한국습지학회지
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• 제10권2호
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• pp.15-22
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• 2008

고산습지인 지리산 왕등재습지에서 담수조류의 분포와 역할을 조사하였다. 환경요인(평균)은 수온 $17.6^{\circ}C$, pH 6.3, 전기전도도 $24.6{\mu}S/cm$, 총질소 0.6 mg/L, 총인 0.09 mg/L 그리고 Chl-a는 $11.9{\mu}g/L$였다. 담수조류는 총 159종이 출현하였으며 녹조강 87종, 규조강 56종, 유글레나강 11종 그리고 남조강이 5종이었다. 이 중에서 녹조강의 물먼지말(desmid)이 56종으로 가장 많았고, 우점종은 규조강의 Aulacoseira distans이었다. 왕등재습지의 먹이사슬 분석을 위해 올챙이의 채식물을 분석한 결과 주로 담수조류를 섭식하였으며, 수중 우점조류인Aulacoseira distans가 최대로 존재하였다. 왕등재습지의 수중생태계에서 담수조류는 1차 생산자이자 상위 포식자의 먹이원으로서의 역할을 하는 것으로 판단된다.

• ALGAE
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• 제22권3호
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• pp.193-199
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• 2007

This study was carried out to investigate the charateristics of environmental factors and the species compositions of phytoplanktons and periphytons in order to analyze the marine ecosystem (DOK1-3) with freshwater (Mul) in the coast of Dokdo. Mean values of conductivity (TSD) (44.3 mS cm–1), total dissolved solids (30.9 mg L–1), salinity (31.8 psu), total suspended solids (39.2 mg L–1), and ash-free dry matter (AFDM) (8.8 mg L–1) were higher in DOK1- 3 than those in Mul (3.2 mS cm–1, 2.3 mg L–1, 1.9 psu, 2.8 mg L–1 and 2.8 mg L–1, espectively), while mean amounts of soluble reactive phosphorus (SRP) (7.5 μg P L–1) and soluble reactive silicon (SRS) (0.1 μg Si L–1) were significantly lower in DOK1-3 than those in Mul (117.3 μg P L–1 and 4,105 μg Si L–1, respectively). The phytoplanktons was a total of 59 species in Dokdo, which were composed of 1 species (1.7%) for Chrysophyceae, 43 species (72.9%) for Bacillariophyceae and 15 species (25.4%) for Dinophyceae. The biomass (Chl-a, phaeopigment and AFDM) of epilithic algae (ELA), epizooic algae (EZA) and epiphytic algae (EPA) were varied with the kinds of substrates (EPA > ELA > EZA) in the whole stations. Water environments was comparatively clean in the coast of Dokdo as comparing with those of the land. However, the monitoring of marine ecosystem in the Dokdo should be continued for species conservation according to the global warming by the climatic change.

• 한국해양학회지:바다
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• 제2권2호
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• pp.49-52
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• 1997

인공호수인 시화호는 사화지구 개발사업의 일환으로 1994년 1월에 형성되었다. 이 호수 지역은 시화방조제가 건설되기 이전에는 전형적인 해양환경이었으나, 방조제 건설 이후 해수유입이 중단되면서 담수화가 진행되고 있으며, 담수화 과정에서 많은 생태계 변화를 겪고 있다. 또한 시화호 인근 반월공단 및 안산시에서 각종 오폐수가 지속적으로 이 호수에 유입되고 있기 때문에 오염에 따른 여러 가지 부작용도 발생되고 있다. 본 연구 그룹은 시화호 및 주변해역에 대한 생태계 조사를 종합적으로 실시함으로써 인위적인 환경변화가 주변 생태계에 어떤 영향을 미치는가를 밝혔다. 이들 연구 결과를 이번 호에 모아서 싣는다(박 등, 1997; 한 등, 1997; 최 등, 1997; 박과허, 1997; 류 등, 1997; 이 등, 1997; 최 등, 1997).

• 생태와환경
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• 제41권1호
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• pp.111-115
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• 2008

Direct effects of zooplankton grazing activities on the natural assemblage of bacterioplankton and algae were evaluated at monthly intervals, from June to October of 2000, in the middle part of the River Spree, Germany. We quantified bacterioplankton, algae, zooplankton abundance and measured carbon ingestion rates (CIRs) by zooplankton according to two zooplankton size classes: (i) micro zooplankton (MICZ), ranging in size from 30 to $150{\mu}m$ and including rotifers and nauplii, excluding protozoans and (ii) macrozooplankton (MACZ), larger than $150{\mu}m$ and including cladocerans and copepods. CIRs were measured using natural bacterial and algae communities in the zooplankton density manipulation experiments. Algae biomass (average${\pm}$SD: $377{\pm}306{\mu}gC\;L^{-1}$, n=5) was always higher than bacterial biomass ($36.7{\pm}9.9{\mu}gC\;L^{-1}$, n=5). Total zooplankton biomass varied from 19.8 to $137{\mu}gC\;L^{-1}$. Total mean biomass of zooplankton was $59.9{\pm}52.5{\mu}gC\;L^{-1}$ (average${\pm}$SD, n=5). Average MICZ biomass ($40.2{\pm}47.6{\mu}gC\;L^{-1}$ n=5) was nearly twofold higher than MACZ biomass ($19.6{\pm}20.6{\mu}gC\;L^{-1}$ n=5). Total zooplankton CIRs on algae (average${\pm}$SD: $56.6{\pm}26.4{\mu}gC\;L^{-1}\;day^{-1}$) were $\sim$fourfold higher than that on bacteria $(12.7{\pm}6.0{\mu}gC\;L^{-1}\;day^{-1})$. MICZ CIRs on bacteria $(7.0{\pm}2.8{\mu}gC\;L^{-1}\;day^{-1})$ and algae $(28.6{\pm}20.6{\mu}gC\;L^{-1}\;day^{-1})$ were slightly higher than MACZ CIRs. On average, MICZ accounted for 55.6 and 50.5% of total zooplankton grazing on bacteria and algae, respectively. Considering the MICZ and MACZ CIRs, the relative role of transferring carbon to higher trophic levels were nearly similar between both communities in the lake-river ecosystem.

• 한국환경보건학회지
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• 제45권1호
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• pp.42-53
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• 2019

Objectives: The Yongpung reservoir in Korea is a crucial facility that supplies water to farms in its surrounding $2km^2$ area. However, its water quality is not suited to the needs of current residents who wish for the availability of environmentally friendly agricultural products and desire to use the waterfront area. The aim of this research was to evaluate the reservoir's fish and benthic macroinvertebrate distributions and determine its water quality and the heavy metal content in its sediment. This basic data can be used to establish environmentally protective plans for the Yongpung reservoir. Methods: Six sites were selected for analysis in this investigation. Three points (YP-1, YP-2, and YP-3) were evaluated for water quality and metal content in sediments; they were located upstream, midstream, and downstream of the reservoir. Samplings of the fish and benthic macroinvertebrate populations were performed at three other sites: St. 1, St. 2, and St. 3. Results: Based on chemical oxygen demand (COD) and total nitrogen (T-N) data, the quality of the Yongpung reservoir water corresponds to Class VI (very poor) according to Korea's lake environmental standards. The lead levels measured in the sediment at the midstream and downstream points of the reservoir were 76.7 and 72.7 mg/kg, respectively, while 8 orders, 15 families, and 16 species of benthic macroinvertebrates were identified in the reservoir. The ecological score of the benthic macroinvertebrate community (ESB) was between 8 and 23, denoting poor to very poor environmental conditions. Further, 4 families and 7 species of fish were identified in the reservoir, with Cyprinidae accounting for 94.3% of all observed freshwater fish. Conclusion: Based on these findings, we conclude that management plans, including the removal of lead from the sediment, are necessary to improve the quality of the agricultural water in this reservoir. The T. japonica, which cover almost 30% of the water area, must also be removed.