• Title/Summary/Keyword: Feature encoding

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Feature Selection with Ensemble Learning for Prostate Cancer Prediction from Gene Expression

  • Abass, Yusuf Aleshinloye;Adeshina, Steve A.
    • International Journal of Computer Science & Network Security
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    • v.21 no.12spc
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    • pp.526-538
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    • 2021
  • Machine and deep learning-based models are emerging techniques that are being used to address prediction problems in biomedical data analysis. DNA sequence prediction is a critical problem that has attracted a great deal of attention in the biomedical domain. Machine and deep learning-based models have been shown to provide more accurate results when compared to conventional regression-based models. The prediction of the gene sequence that leads to cancerous diseases, such as prostate cancer, is crucial. Identifying the most important features in a gene sequence is a challenging task. Extracting the components of the gene sequence that can provide an insight into the types of mutation in the gene is of great importance as it will lead to effective drug design and the promotion of the new concept of personalised medicine. In this work, we extracted the exons in the prostate gene sequences that were used in the experiment. We built a Deep Neural Network (DNN) and Bi-directional Long-Short Term Memory (Bi-LSTM) model using a k-mer encoding for the DNA sequence and one-hot encoding for the class label. The models were evaluated using different classification metrics. Our experimental results show that DNN model prediction offers a training accuracy of 99 percent and validation accuracy of 96 percent. The bi-LSTM model also has a training accuracy of 95 percent and validation accuracy of 91 percent.

Slow Feature Analysis for Mitotic Event Recognition

  • Chu, Jinghui;Liang, Hailan;Tong, Zheng;Lu, Wei
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.11 no.3
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    • pp.1670-1683
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    • 2017
  • Mitotic event recognition is a crucial and challenging task in biomedical applications. In this paper, we introduce the slow feature analysis and propose a fully-automated mitotic event recognition method for cell populations imaged with time-lapse phase contrast microscopy. The method includes three steps. First, a candidate sequence extraction method is utilized to exclude most of the sequences not containing mitosis. Next, slow feature is learned from the candidate sequences using slow feature analysis. Finally, a hidden conditional random field (HCRF) model is applied for the classification of the sequences. We use a supervised SFA learning strategy to learn the slow feature function because the strategy brings image content and discriminative information together to get a better encoding. Besides, the HCRF model is more suitable to describe the temporal structure of image sequences than nonsequential SVM approaches. In our experiment, the proposed recognition method achieved 0.93 area under curve (AUC) and 91% accuracy on a very challenging phase contrast microscopy dataset named C2C12.

How is the inner contour of objects encoded in visual working memory: evidence from holes (물체 내부 윤곽선의 시각 작업기억 표상: 구멍이 있는 물체를 중심으로)

  • Kim, Sung-Ho
    • Korean Journal of Cognitive Science
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    • v.27 no.3
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    • pp.355-376
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    • 2016
  • We used holes defined by color similarity (Experiment 1) and binocular disparity (Experiment 2) to study how the inner contour of an object (i.e., boundary of a hole in it) is encoded in visual working memory. Many studies in VWM have shown that an object's boundary properties can be integrated with its surface properties via their shared spatial location, yielding an object-based encoding benefit. However, encoding of the hole contours has rarely been tested. We presented objects (squares or circles) containing a bar under a change detection paradigm, and relevant features to be remembered were the color of objects and the orientation of bars (or holes). If the contour of a hole belongs to the surrounding object rather than to the hole itself, the object-based feature binding hypothesis predicts that the shape of it can be integrated with color of an outer object, via their shared spatial location. Thus, in the hole display, change detection performance was expected to better than in the conjunction display where orientation and color features to be remembered were assigned to different parts of a conjunction object, and comparable to that in a single bar display where both orientation and color were assigned into a single bar. However, the results revealed that performance in the hole display did not differ from that in the conjunction display. This suggests that the shape of holes is not automatically encoded together with the surface properties of the outer object via object-based feature binding, but encoded independently from the surrounding object.

Condition-invariant Place Recognition Using Deep Convolutional Auto-encoder (Deep Convolutional Auto-encoder를 이용한 환경 변화에 강인한 장소 인식)

  • Oh, Junghyun;Lee, Beomhee
    • The Journal of Korea Robotics Society
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    • v.14 no.1
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    • pp.8-13
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    • 2019
  • Visual place recognition is widely researched area in robotics, as it is one of the elemental requirements for autonomous navigation, simultaneous localization and mapping for mobile robots. However, place recognition in changing environment is a challenging problem since a same place look different according to the time, weather, and seasons. This paper presents a feature extraction method using a deep convolutional auto-encoder to recognize places under severe appearance changes. Given database and query image sequences from different environments, the convolutional auto-encoder is trained to predict the images of the desired environment. The training process is performed by minimizing the loss function between the predicted image and the desired image. After finishing the training process, the encoding part of the structure transforms an input image to a low dimensional latent representation, and it can be used as a condition-invariant feature for recognizing places in changing environment. Experiments were conducted to prove the effective of the proposed method, and the results showed that our method outperformed than existing methods.

Experiment on Intermediate Feature Coding for Object Detection and Segmentation

  • Jeong, Min Hyuk;Jin, Hoe-Yong;Kim, Sang-Kyun;Lee, Heekyung;Choo, Hyon-Gon;Lim, Hanshin;Seo, Jeongil
    • Journal of Broadcast Engineering
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    • v.25 no.7
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    • pp.1081-1094
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    • 2020
  • With the recent development of deep learning, most computer vision-related tasks are being solved with deep learning-based network technologies such as CNN and RNN. Computer vision tasks such as object detection or object segmentation use intermediate features extracted from the same backbone such as Resnet or FPN for training and inference for object detection and segmentation. In this paper, an experiment was conducted to find out the compression efficiency and the effect of encoding on task inference performance when the features extracted in the intermediate stage of CNN are encoded. The feature map that combines the features of 256 channels into one image and the original image were encoded in HEVC to compare and analyze the inference performance for object detection and segmentation. Since the intermediate feature map encodes the five levels of feature maps (P2 to P6), the image size and resolution are increased compared to the original image. However, when the degree of compression is weakened, the use of feature maps yields similar or better inference results to the inference performance of the original image.

A User Driven Adaptable Bandwidth Video System for Remote Medical Diagnosis System (원격 의료 진단 시스템을 위한 사용자 기반 적응 대역폭 비디오 시스템)

  • Chung, Yeongjee;Wright, Dustin;Ozturk, Yusuf
    • Journal of Information Technology Services
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    • v.14 no.1
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    • pp.99-113
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    • 2015
  • Adaptive bitrate (ABR) streaming technology has become an important and prevalent feature in many multimedia delivery systems, with content providers such as Netflix and Amazon using ABR streaming to increase bandwidth efficiency and provide the maximum user experience when channel conditions are not ideal. Where such systems could see improvement is in the delivery of live video with a closed loop cognitive control of video encoding. In this paper, we present streaming camera system which provides spatially and temporally adaptive video streams, learning the user's preferences in order to make intelligent scaling decisions. The system employs a hardware based H.264/AVC encoder for video compression. The encoding parameters can be configured by the user or by the cognitive system on behalf of the user when the bandwidth changes. A cognitive video client developed in this study learns the user's preferences (i.e. video size over frame rate) over time and intelligently adapts encoding parameters when the channel conditions change. It has been demonstrated that the cognitive decision system developed has the ability to control video bandwidth by altering the spatial and temporal resolution, as well as the ability to make scaling decisions

Avalanche and Bit Independence Properties of Photon-counting Double Random Phase Encoding in Gyrator Domain

  • Lee, Jieun;Sultana, Nishat;Yi, Faliu;Moon, Inkyu
    • Current Optics and Photonics
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    • v.2 no.4
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    • pp.368-377
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    • 2018
  • In this paper, we evaluate cryptographic properties of a double random phase encoding (DRPE) scheme in the discrete Gyrator domain with avalanche and bit independence criterions. DRPE in the discrete Gyrator domain is reported to have higher security than traditional DRPE in the Fourier domain because the rotation angle involved in the Gyrator transform is viewed as additional secret keys. However, our numerical experimental results demonstrate that the DRPE in the discrete Gyrator domain has an excellent bit independence feature but does not possess a good avalanche effect property and hence needs to be improved to satisfy with acceptable avalanche effect that would be robust against statistical-based cryptanalysis. We compare our results with the avalanche and bit independence criterion (BIC) performances of the conventional DRPE scheme, and improve the avalanche effect of DRPE in the discrete Gyrator domain by integrating a photon counting imaging technique. Although the Gyrator transform-based image cryptosystem has been studied, to the best of our knowledge, this is the first report on a cryptographic evaluation of discrete Gyrator transform with avalanche and bit independence criterions.

A Study for Global Optimization Using Dynamic Encoding Algorithm for Searches

  • Kim, Nam-Geun;Kim, Jong-Wook;Kim, Sang-Woo
    • 제어로봇시스템학회:학술대회논문집
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    • 2004.08a
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    • pp.857-862
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    • 2004
  • This paper analyzes properties of the recently developed nonlinear optimization method, Dynamic Encoding Algorithm for Searches (DEAS) [1]. DEAS locates local minima with binary strings (or binary matrices for multi-dimensional problems) by iterating the two operators; bisectional search (BSS) and unidirectional search (UDS). BSS increases binary strings by one digit (i.e., zero or one), while UDS performs increment or decrement to binary strings with no change of string length. Owing to these search routines, DEAS retains the optimization capability that combines the special features of several conventional optimization methods. In this paper, a special feature of BSS and UDS in DEAS is analyzed. In addition, a effective global search strategy is established by using information of DEAS. Effectiveness of the proposed global search strategy is validated through the well-known benchmark functions.

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Realization of High Precision Position Measurement System Using M-sequence Encoded Laser Beam Scanning

  • Takayama, Jun-ya;Shinji Ohyama;Akira Kobayashi
    • 제어로봇시스템학회:학술대회논문집
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    • 2001.10a
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    • pp.107.5-107
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    • 2001
  • In this report, as the active position measurement system, a new method for two-dimensional position measurement system using a concept of semi-open type signal field has proposed. The feature of this system is realizing a position measurement only by scanning the encoded laser beams from scanning points to a measurement field, and observed it. First, both system configuration and encoding method are considered concretely, and M-sequence signal is selected for encoding. Next system design is performed to realize the theoretical measurement accuracy, and applied to a position measurement experiments. Experimental results show that measurement precision is larger than theoretical values. Furthermore, method for improving the measurement ...

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CoNSIST : Consist of New methodologies on AASIST, leveraging Squeeze-and-Excitation, Positional Encoding, and Re-formulated HS-GAL

  • Jae-Hoon Ha;Joo-Won Mun;Sang-Yup Lee
    • Annual Conference of KIPS
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    • 2024.05a
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    • pp.692-695
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    • 2024
  • With the recent advancements in artificial intelligence (AI), the performance of deep learning-based audio deepfake technology has significantly improved. This technology has been exploited for criminal activities, leading to various cases of victimization. To prevent such illicit outcomes, this paper proposes a deep learning-based audio deepfake detection model. In this study, we propose CoNSIST, an improved audio deepfake detection model, which incorporates three additional components into the graph-based end-to-end model AASIST: (i) Squeeze and Excitation, (ii) Positional Encoding, and (iii) Reformulated HS-GAL, This incorporation is expected to enable more effective feature extraction, elimination of unnecessary operations, and consideration of more diverse information, thereby improving the performance of the original AASIST. The results of multiple experiments indicate that CoNSIST has enhanced the performance of audio deepfake detection compared to existing models.