• Title/Summary/Keyword: F-Measure

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Estimation of heritability and genetic correlation of body weight gain and growth curve parameters in Korean native chicken

  • Manjula, Prabuddha;Park, Hee-Bok;Seo, Dongwon;Choi, Nuri;Jin, Shil;Ahn, Sung Jin;Heo, Kang Nyeong;Kang, Bo Seok;Lee, Jun-Heon
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.1
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    • pp.26-31
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    • 2018
  • Objective: This study estimated the genetic parameters for body weight gain and growth curve parameter traits in Korean native chicken (KNC). Methods: A total of 585 $F_1$ chickens were used along with 88 of their $F_0$ birds. Body weights were measured every 2 weeks from hatching to 20 weeks of age to measure weight gain at 2-week intervals. For each individual, a logistic growth curve model was fitted to the longitudinal growth dataset to obtain three growth curve parameters (${\alpha}$, asymptotic final body weight; ${\beta}$, inflection point; and ${\gamma}$, constant scale that was proportional to the overall growth rate). Genetic parameters were estimated based on the linear-mixed model using a restricted maximum likelihood method. Results: Heritability estimates of body weight gain traits were low to high (0.057 to 0.458). Heritability estimates for ${\alpha}$, ${\beta}$, and ${\gamma}$ were $0.211{\pm}0.08$, $0.249{\pm}0.09$, and $0.095{\pm}0.06$, respectively. Both genetic and phenotypic correlations between weight gain traits ranged from -0.527 to 0.993. Genetic and phenotypic correlation between the growth curve parameters and weight gain traits ranged from -0.968 to 0.987. Conclusion: Based on the results of this study population, we suggest that the KNC could be used for selective breeding between 6 and 8 weeks of age to enhance the overall genetic improvement of growth traits. After validation of these results in independent studies, these findings will be useful for further optimization of breeding programs for KNC.

Molecular Biological Studies on the Stress Protein HSP90$\beta$ Gene from Flounder (Paralichthys olivaceus) (넙치(Paralichthys olivaceus) HSP90$\beta$ 유전자의 분자생물학적 연구)

  • Lee, Jae-Hyeong;Kim, Yeong-Tae
    • Microbiology and Biotechnology Letters
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    • v.32 no.4
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    • pp.297-306
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    • 2004
  • Heat shock proteins (HSPs) were induced in cells in the thermal stress, and the HSP90 family is one of the major classes of HSPs. Gene encoding HSPs have been characterized from various mammals and piscine. We have cloned and sequenced the HSP90 cDNA from a brain cDNA library constructed from flounder (Paralichthys oliThe result of sequence analysis shows it to be the HSP90~. The nucleotide sequence of the HSP90$\beta$ was composed of 2791 long, encoding 726 amino acid residues. The flounder hsp90$\beta$ gene showed very high sequence homology with hsp90f3 of European sea bass (96.6%), zebrafish (92.9%), Atlantic salmon (92.0%) and human (89.5%). We also constructed a phylogenetic tree based on HSP90 amino acid sequences from vertebrate species. Gene-specific primers were selected and used in RT-PCR reactions to measure the basal hsp90$\beta$ mRNA. The hsp90f3 gene is constitutively expressed at a fairly high level in all examined tissues (brain, liver, kidney, muscle, and spleen). In order to express protein of flounder hsp90$\beta$ in E. coli, we used the His-tagged pETvector. Then, the expression of flounder HSP90$\beta$ was confirmed by Western blot analysis.

Effects of Electrotherapy on Blood Velocity of Cranial Artery in Tension-Type Headache subjects (전기치료가 긴장형 두통환자의 뇌 혈류 속도에 미치는 영향)

  • Park Rae-Joon;Kim Jin-Sang;Lee In-Hak;Park Jang-hwan;Han Dong-Uck
    • The Journal of Korean Physical Therapy
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    • v.12 no.3
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    • pp.349-359
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    • 2000
  • The aim of study was to evaluated the possible role of cranial artery velocity in headache pathogenesis. The present study was studied of five headache(F=5. Mean $age=29.80\pm6.76yrs$) were compared to 4 controls(F=4, Mean $age=29.00\pm5.48yrs$). Transcranial doppler ultrasonography(TCD) is a new non-invasive and easily applicable method to evaluate flow velocities of the intracranial and extracranial cerebral arteries. TCD was performed with standard method to measure the mean Flow Velocity(MFV) of the middle and posterior cerebral arteries, the internal carotid artery, the vertebral and the basilar artery. We reviewed the whole TCD results performed at Taejon Veterans Hospital from October. 11. 2000 to November. 10. 2000. Mean flow velocities in headaches and controls at their 6 decades are $28.00\pm3.61cm/sec$ and $41.25pm1.71cm/sec$ in lent PCA (P<0.01), $50,000\pm23.07cm/sec$ and $82.75\pm15.59cm/sec$ in right MCA(P<0.05), $26.20\pm4.82cm/sec$ and $45.50\pm4.51cm/sec$ in fight PCA(P<0.01). $26.60\pm4.56cm/sec$ and $38.25\pm4.92cm/sec$ in right VAC(P<0.01). After treatment for 2 weeks, mean of velocity on pre treatment and post treatment and post treatment are $28.00\pm3.61cm/sec$ and $38.20\pm5.81cm/sec$ in left PCA (P<0.05), $26.20\pm4.827cm/sec$ and $39.20\pm5.54cm/sec$ in right PCA(P<0.05), $40.60\pm9.18cm/sec$ in right VA(P<0.01). It is concluded that Electrical Therapy for two weeks was effected to promote Mean Flow of Velocity in cranial artery. Mean of velocity in cranial artery with headaches observed in this study was lower than controls, but MFV was promote after treatment for 2 weeks.

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Software Development for Dynamic Positron Emission Tomography : Dynamic Image Analysis (DIA) Tool (동적 양전자방출단층 영상 분석을 위한 소프트웨어 개발: DIA Tool)

  • Pyeon, Do-Yeong;Kim, Jung-Su;Jung, Young-Jin
    • Journal of radiological science and technology
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    • v.39 no.3
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    • pp.369-376
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    • 2016
  • Positron Emission Tomography(PET) is nuclear medical tests which is a combination of several compounds with a radioactive isotope that can be injected into body to quantitatively measure the metabolic rate (in the body). Especially, Phenomena that increase (sing) glucose metabolism in cancer tissue using the $^{18}F$-FDG (Fluorodeoxyglucose) is utilized widely in cancer diagnosis. And then, Numerous studies have been reported that incidence seems high availability even in the modern diagnosis of dementia and Parkinson's (disease) in brain disease. When using a dynamic PET iamge including the time information in the static information that is provided for the diagnosis many can increase the accuracy of diagnosis. For this reason, clinical researchers getting great attention but, it is the lack of tools to conduct research. And, it interfered complex mathematical algorithm and programming skills for activation of research. In this study, in order to easy to use and enable research dPET, we developed the software based graphic user interface(GUI). In the future, by many clinical researcher using DIA-Tool is expected to be of great help to dPET research.

Detection of M:N corresponding class group pairs between two spatial datasets with agglomerative hierarchical clustering (응집 계층 군집화 기법을 이용한 이종 공간정보의 M:N 대응 클래스 군집 쌍 탐색)

  • Huh, Yong;Kim, Jung-Ok;Yu, Ki-Yun
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.30 no.2
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    • pp.125-134
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    • 2012
  • In this paper, we propose a method to analyze M:N corresponding relations in semantic matching, especially focusing on feature class matching. Similarities between any class pairs are measured by spatial objects which coexist in the class pairs, and corresponding classes are obtained by clustering with these pairwise similarities. We applied a graph embedding method, which constructs a global configuration of each class in a low-dimensional Euclidean space while preserving the above pairwise similarities, so that the distances between the embedded classes are proportional to the overall degree of similarity on the edge paths in the graph. Thus, the clustering problem could be solved by employing a general clustering algorithm with the embedded coordinates. We applied the proposed method to polygon object layers in a topographic map and land parcel categories in a cadastral map of Suwon area and evaluated the results. F-measures of the detected class pairs were analyzed to validate the results. And some class pairs which would not detected by analysis on nominal class names were detected by the proposed method.

Discipline Bias of Document Citation Impact Indicators: Analyzing Articles in Korean Citation Index (논문 인용 영향력 측정 지수의 편향성에 대한 연구: KCI 수록 논문을 대상으로)

  • Lee, Jae Yun;Choi, Sanghee
    • Journal of the Korean Society for information Management
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    • v.32 no.4
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    • pp.205-221
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    • 2015
  • The impact of a journal is commonly used as the impact of an individual paper within that journal. It is problematic to interpret a journal's impact as a single paper's impact of the journal, so there are several researches to measure a single paper's impact with its own citation counts. This study applied 8 impact indicators to Korean Citation Index database and examined discipline bias of each indicator. Analyzed indicators are simple citation counts, PageRank, f-value, CCI, c-index, single publication h-index, single publication hs-index, and cl-index. PageRank has the least discipline bias at highly ranked papers and journal bias in a discipline. On the contrary, simple citation counts showed strongly biased results toward a certain discipline or a journal. KCI database provides only simple citation counts. It needs to show PageRank (global indicator) to discover influential papers in diverse areas. Furthermore it needs to consider to provide the best of local indicators. Local indicators can be calculated only with papers in users' search results because they uses citation counts of citing papers and the number of references. They are more efficient than global indicators which explore the whole database. KCI should also consider to provide Cl-index (local indicator).

A STUDY ON THE EFFECTS OF THE TEMPERATURE AND HUMIDITY TO THE TENSILE BOND STRENGTH BETWEEN GLASS-IONOMER CEMENT AND COMPOSITE RESIN (온도 및 습도가 Glass-ionomer cement와 Composite resin의 접착강도에 미치는 변화에 관한 연구)

  • Chung, Inn-Gyo;Min, Byung-Soon
    • Restorative Dentistry and Endodontics
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    • v.16 no.1
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    • pp.60-73
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    • 1991
  • The purpose of this study is to evaluate the effects of etching time, environmental temperature and humidity on the adhesion of composite resin to glass-ionomer cement. Two chemical cure composite resins (Clearfil F II and Microrest AP) and two glass-ionomer cements (Fuji ionomer Type I and KET AC-CEM) were used as the experimental materials. The experiment is performed in 3 stages: The first stage is to bond composite resins to glass-ionomer cements, and the surface was not etched, and etched for 20 seconds, 40 seconds, and 60 seconds. Then specimens are stored in distilled water at $37^{\circ}C$ for 24 hours to measure tensile strength. The second stage is to choose the one group that had the highest tensile strength from the first stage and prepare two experimental groups: One group with composite resin bonded to glass-ionomer cement without etching and bonding agent application and the other with composite resin bonded to glass-ionomer cement with etching but without any bonding agent application. The specimens are stored in distilled water at $37^{\circ}C$ for 24 hours and tensile strength is measured. The third stage is to choose group that had the highest tensile strength from the first stage experiment, and bond composite resin to glass-ionomer cement at $24^{\circ}C$ 44%, $30^{\circ}C$ 44%, $30^{\circ}C$ 80%, and $32^{\circ}C$ 92%. The storage time of specimens is to bond immediately after storage, then changed to 30 sec., 60 sec., and 120 sec.. Specimens are stored in distilled water at $37^{\circ}C$ for 24 hours and their tensile strength are measured again. The following results were obtained: 1. As the etching time increases, the tensile bond strength between glass-ionomer cement and composite resin increase, and the tensile bond strength is the highest when acid etched for 60 minutes (P < 0.05). 2. After acid etching for 60 minutes, the tensile strength of the group with bonding agent was stronger than that without bonding agent application (P < 0.05). 3. The tensile strength of Clearfil F II was stronger than that of Microrest AP. 4. It was observed that the tensile bond strength is not affected by different storage time with different temperature and humidity. 5. As the humidity was increased, the tensile bond strength between glass-ionomer cement and composite resin decreased (P < 0.05).

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AN EXPERIMENTAL STUDY ON THE STRESS DISTRIBUTION IN THE PERIODONTAL LIGAMENT (치주인대의 응력 분포 양상에 관한 실험 연구)

  • Choy, Kwang-Chul;Kim, Kyung-Ho;Park, Young-Chel;Han, Jung-Yun
    • The korean journal of orthodontics
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    • v.31 no.1 s.84
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    • pp.15-24
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    • 2001
  • In order to achieve a desirable tooth movement, it is of great importance to control the M/F ratio and to know the location of the center of resistance. The purpose of this study was to locate the center of resistance and the axis of rotation, and to estimate the stress distribution in the periodontal ligament with experimental model. After preparing a model of an upper canine with a simulated periodontal ligament and alveolar bone, the force and moment were applied. The tooth movement was traced using measuring device with LVDTs(Linear variable differential transformers) that can measure three dimensional tooth movement in real time. The results were as follows. 1. The location of center of resistance by transverse force was $29\%$ of root length measured from alveolar crest to apex regardless of force magnitude. The position of the center of resistance is more coronal than that of two-dimensional model($42\%$). 2. The center of resistance and the axis of rotation coincide when couple moment was applied. 3. As the magnitude of moment increases, tooth tends to extrude irrespective of the direction of the moment. 4. The relationship between location of force and axis of rotation (a x b = $49.6\;mm^2$) was obtained. A tooth movement can be predicted through this formula. 5. The centers of rotation by transverse force were plotted linearly.

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An Experimental Study on Resistance of rapid Freezing and Thawing of Chloride-inhibiting Low-Heat Cement (차염성 저발열시멘트의 급속동결융해 저항성에 관한 실험적 연구)

  • Sim, Jong-Sung;Park, Cheol-Woo;Park, Sung-Jae;Kang, Tae-Sung;Ju, Min-Kwan;Kim, Tae-Soo
    • Proceedings of the Korea Concrete Institute Conference
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    • 2008.04a
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    • pp.589-592
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    • 2008
  • This study was conducted to assess the durability of Chloride-inhibiting Low-Heat Cement while being subjected to freezing-thawing during winter seasons. Although durability varies slightly depending on the conditions of the jobsite, frost damage to concrete resulting from repeated freezing and thawing over the course of seasonal changes is the leading cause behind lowered concrete durability. in addition, concrete that has been subjected to freezing and thawing during the winter season develops a significant amount of expansive force at the core and begins to exhibit signs of damage, such as cracking, peeling, and detachment from the aggregate. Therefore, this study fabricated test specimens using a Chloride-inhibiting Low-Heat Cement(CLC) and the widely used blast furnace slag cement(BFS) and Ordinary Portland Cement(OPC) with water-to-cement ratios of 35%, 40% and 45%, respectively, to assess the durability index of the CLC as per resistance to freezing-thawing. The specimens were then tested using the KS F 2456 method (Testing method for resistance of concrete to rapid freezing and thawing) to measure the dynamic modulus of elasticity. The dynamic modulus of elasticity measurements were then used to derive the durability indices. By comparing the durability indices, it was confirmed that CLC, BFS, and OPC all had superior durability.

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The Short-term Effects of Soil Brought and Subsoil Inversion on Growth and Tissue Nutrient Concentrations of Fraxinus rhynchophylla, Pinus densiflora, and Pinus koraiensis Seedlings in a Nursery (객토와 심토뒤집기 처리가 물푸레나무, 소나무, 잣나무 묘목의 초기 생장과 양분함량에 미치는 영향)

  • An, Ji Young;Park, Byung Bae;Byun, Jae Kyung;Cho, Min Seok;Kim, Yong Suk;Han, Si Ho;Kim, Se Bin
    • Journal of Korean Society of Forest Science
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    • v.104 no.1
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    • pp.43-49
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    • 2015
  • The production of high quality seedlings is a very important phase in silvicultural systems for successful reforestation or restoration. The purpose of this study was to quantitatively measure both growth performances and nutrient responses of Fraxinus rhynchophylla, Pinus densiflora, and Pinus koraiensis seedlings, which are commercially planted in Korea, according to the different types of soil improvement treatments. We applied soil brought (hereafter 'brought'), subsoil inversion (hereafter 'subsoil'), and mixture of brought soil with soil on nursery bed (hereafter 'mixing') in a permanent national nursery. Silt and clay contents were the highest at the subsoil treatment and organic material, soil nitrogen and phosphorus concentrations were the lowest at the brought treatment. The growth of F. rhynchophylla was the lowest at the subsoil treatment, but there were no significant differences among treatments. There were significant differences in only root nutrient concentrations of F. rhynchophylla among treatments: nitrogen, phosphorus, and potassium concentrations were the lowest at the subsoil or brought treatment. Mixing treatment increased N contents with deduction of N concentrations ('dilution') because of more dry weight increase compared with the amount of N uptake. This study suggested mix of brought soil with soil on a nursery bed in a permanently used nursery can economically be an effective technique to improve soil quality.