• Title/Summary/Keyword: F-K 분석

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Draft genome sequence of Fusobacterium polymorphum KCOM 1001 isolated from a human subgingival dental plaque of gingivitis lesion (사람 치은염 병소 치은연하치면 세균막에서 분리된 Fusobacterium polymorphum KCOM 1001의 유전체 염기서열 해독)

  • Park, Soon-Nang;Lim, Yun Kyong;Shin, Ja Young;Roh, Hanseong;Kook, Joong-Ki
    • Korean Journal of Microbiology
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    • v.54 no.1
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    • pp.71-73
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    • 2018
  • Recently, Fusobacterium nucleatum subsp. polymorphum was reclassified as Fusobacterium polymorphum based on the average nucleotide identity and genome-to-genome distance analyses. F. polymorphum is a Gram-negative, anaerobic, and filament-shaped bacterium. F. polymorphum is a part of normal flora of oral cavity and causative agent of periodontal diseases. F. polymorphum KCOM 1001 (= ChDC F119) was isolated from a human subgingival plaque of gingivitis lesion. Here, we present the complete genome sequence of F. polymorphum KCOM 1001.

A novel approach for analysis of LC/MS data - Peak Clustering and Fitting (LC/MS 데이터 분석의 새로운 접근 방법 - 피크 군집화와 조정)

  • Han, Joon-Hee;Lee, Byung-Hwa
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2004.11a
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    • pp.296-306
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    • 2004
  • LC/MS를 이용하여 펩타이드 혹은 단백질 같은 물질을 분석하는 실험이 급격히 늘어남에 따라 LC/MS 데이터를 자동으로 처리하는 기술에 대한 요구가 커지고 있다. 이러한 LC/MS 데이터의 자동 분석 기술에 대한 연구는 현재 활발히 진행되어 왔고, 이를 직접 구현한 여러 상용 소프트웨어들이 개발되어 있는 상태이다. LC/MS 데이터는 noise 제거, background 데이터 제거, deconvolution 알고리즘을 적용한 분자량(molecular weight) 할당 등의 작업을 거쳐 분석하게 된다. 이러한 과정을 거쳐 얻어진 분자량에 대한 데이터가 올바른 값인지 검증하는 작업이 필요하다. 본 논문에서는 이러한 검증 작업과 관련하여 Peak Clustering and Fitting(이하 PC&F)에 대한 알고리즘을 제안한다. PC&F은 peak 데이터들이 지니고 있는 속성에 대한 Mahalanobis distance를 이용하여 peak 데이터를 각 retention time에 따라 clustering 분석을 하는 작업이다. 본 논문에서 제안하는 PC&F 알고리즘을 Microsoft Visual C++ 6.0 MFC 환경에서 직접 개발한 소프트웨어(PeakClusterFitLCMS)로 실험하였다. 실험결과 PC&F 작업을 통해 동일한 구성물질로부터 발생한 peak 데이터를 모아서 보다 신뢰할 수 있는 분자량을 구할 수 있었고, 구성물질에 의해 발생되지 않은 noise peak 데이터를 찾아 제거시킬 수 있음을 확인할 수 있었다.

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Functional ARCH (fARCH) for high-frequency time series: illustration (고빈도 시계열 분석을 위한 함수 변동성 fARCH(1) 모형 소개와 예시)

  • Yoon, J.E.;Kim, Jong-Min;Hwang, S.Y.
    • The Korean Journal of Applied Statistics
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    • v.30 no.6
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    • pp.983-991
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    • 2017
  • High frequency time series are now prevalent in financial data. However, models need to be further developed to suit high frequency time series that account for intraday volatilities since traditional volatility models such as ARCH and GARCH are concerned only with daily volatilities. Due to $H{\ddot{o}}rmann$ et al. (2013), functional ARCH abbreviated as fARCH is proposed to analyze intraday volatilities based on high frequency time series. This article introduces fARCH to readers that illustrate intraday volatility configuration on the KOSPI and the Hyundai motor company based on the data with one minute high frequency.

Quality Control on Standard Samples of $N-NO_3$ and $F^-$ of Drinking Water Quality Pollutant (먹는물 수질오염물질 표준시료에 대한 신뢰도 검증 - 질산성질소, 불소 -)

  • Park, Sun Ku;Song, Ki Bong;Kim, Pyong Chung
    • Analytical Science and Technology
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    • v.13 no.2
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    • pp.229-233
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    • 2000
  • The study was carried out to confirm the reliability of standard samples, low concentration $0.74mgN(NO_3)/l$, $0.58mgF^-/l$, high concentration $2.14mgN(NO_3)/l$, $1.25mgF^-/l$, on the base of quality control chart. The analytical results had the precise reliability with standard deviation of 0.010, 0.017, 0.056 and 0.019, respectively. When three persons A, B and C, who had different analytical experiences, analyzed the standard samples six times repeatedly, C person, who had more academic career and analytical experience, produced far better reliability for analytical results. Therefore, these standard samples were very suitable for external quality control test, because all persons' average values for analytical results were close to the values of prepared standard samples.

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Growth of $CaF_{2}:R^{+3}$ (R=Nd, Er) layers by molecular beam epitaxy (Molecular beam epitaxy법에 의한 희토류 이온$(Nd^{3+},\;Er^{3+})$ 첨가 $CaF_{2}$ 박막의 성장)

  • ;Yefen Chen;Tsuguo Fukuda
    • Journal of the Korean Crystal Growth and Crystal Technology
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    • v.9 no.1
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    • pp.1-5
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    • 1999
  • The rare-earth ions ($R^{3+}$, R=Nd, Er) doped $CaF_{2}$ layers have been grown on $CaF_{2}$ (111) substrate by molecular beam epitaxy. The surface structure and the crystallinity of $CaF_{2}:R^{3+}$ layers depending on the doping concentration of $R^{3+}$ and layer thickness were studied by reflection high-energy electron diffraction (RHEED). In aspect of application as buffer layer in semiconductor-related hybrid structure, the lattice displacement between $CaF_{2}:R^{3+}$ layers and $CaF_{2}$ (111) substrate was investigated by X-ray rocking curve analysis.

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Analysis the 10kW-grade Rotor Blade with Fiber Reinforced Plastics (F.R.P로 제작된 10kW급 소형 Rotor Blade의 특성 분석)

  • Son Choong-Yul;Kim Keon-Hoon;Shin Jong-Yeon;Lee Jung-Tak
    • Proceedings of the Computational Structural Engineering Institute Conference
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    • 2005.04a
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    • pp.575-582
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    • 2005
  • Wind Turbines of big scale of modem stage are made of a part glass F.R.P. Carbon Reinforced Plastic and Kevlar can be used 0 reinforcement but those are not economical in big scale of Wind Turbines. In this study life sized 10kW-class Rotor Blade is made of F.R.P. which is high stiffness and good dynamic behavior characteristic for light weight. It is accomplished an experimental research of Bending analysis blade. Bending analysis blade are calculated with F.E. Analysis performed with commercial F.E.M program ANSYS. Finally, experimental research is compared with F.E. Analysis. The results indicate that experimental values have good agreements with the F.E. Analysis.

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Noise Modeling of ToF Camera Images using Skellam Distribution (Skellam 분포를 이용한 ToF 카메라 영상의 노이즈 모델링)

  • Kang, Ju-Mi;Kim, Sung-Jei;Ryu, Hanna
    • Proceedings of the Korea Information Processing Society Conference
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    • 2019.10a
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    • pp.1073-1075
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    • 2019
  • 최근 VR/AR, 자율주행차 등 다양한 응용분야가 주목 받으며 Time of Flight (ToF) 카메라와 같은 사물과 카메라 간의 거리를 측정할 수 있는 3D 카메라를 활용한 연구가 활발히 진행되고 있다. 정확한 영상 정보를 획득하기 위해, ToF 카메라 센서에 의해 발생할 수 있는 노이즈를 모델링하는 것은 필수적이다. 본 논문에서 우리는 ToF 카메라 센서에 의해 발생하는 노이즈를 모델링하기 위해 Skellam 분포를 도입한다. 연속하는 거리 영상의 픽셀 차에 대한 분포를 분석함으로써 Skellam 분포 적용의 타당성을 제시한다. ToF 카메라의 노이즈 모델링을 통해 ToF 카메라 센서에 발생하는 노이즈를 제거하고 출력 영상의 품질을 향상시킬 것으로 기대한다.

Components and Biological Activity of Aqueous Extract Isolated from Winged Stem of Euonymus alatus (화살나무 물 추출물의 구성성분과 생리활성)

  • Oh, Bong-Yun;Hwang, Soo-Kyung;Cheong, Mi-Young;Sin, Hong-Sig;Park, Bock-Hee;Lee, Jeong-Ho;Kim, Soo-Hyun
    • Korean Journal of Food Science and Technology
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    • v.37 no.6
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    • pp.898-904
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    • 2005
  • Although Euonymus alatus (EA) has been used as traditional medicine for cancer treatment, exact substances involved in curing of the disease are not yet known. Free radical scavenging and reactive oxygen species (ROS) removal activities of aqueous extract components isolated from winged stem of EA in animal cell line were investigated. Aqueous extract of EA (AEEA) was fractionated by ultrafiltration. All fractions mainly consisted of polysaccharide (44.8%), protein (2.1%), small amounts of phenol compounds and organic acids. Antioxidant activity of AEEA increased depending on concentration fractions, as determined by 1,1-diphenyl-2-picrylhydrazyl method. ROS removal activity was visualized in Chinese hamster ovary cell line using laser scanning confocal microscope, and AEEA activity increased in order of F IV>F III>F I>F II. These results suggest AETA has bioactive carbohydrates with potentials as functional foods and antioxidants.

Diversity and Pathogenic Characteristics of Fusarium Species isolated from Wilted Soybeans in Korea (콩 시들음병에 관여하는 Fusarium균의 다양성 및 병원학적 특성)

  • Choi, Hyo-Won;Kim, Seungnoh;Hong, Sung Kee
    • The Korean Journal of Mycology
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    • v.48 no.3
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    • pp.297-312
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    • 2020
  • Wilted soybean plants were collected from soybeans cultivation fields in Korea from 2014 to 2016. Fusarium spp., Colletotrichum spp., Rhizoctonia spp., Macrophomina sp., Phytophthora spp., and Calonectria ilicicola were obtained from the infected samples. Out of these, Fusarium spp. were the dominant species (79.1%). In total, 53 isolates were identified as F. solani species complex, F. oxysporum species complex, F. graminearum species complex, and F. fujikuroi species complex based on mycological characteristics. Sequence typing analysis was conducted using translation elongation factor 1 alpha (TEF) to confirm the identification of isolates. All isolates were identified as F. solani, F. oxysporum, F. commune, F. asiaticum, and F. fujikuroi based on phylogenetic analysis of TEF sequences. Pathogenicity of 44 isolates was tested on three cultivars of soybean using the root dip inoculation method. Out of 5 Fusarium species, only F. asiaticum could not cause the symptoms or be weak. Ten isolates were selected based on pathogenic characters and species identification to investigate the host range and screen soybean cultivars for resistance. Fusarium solani, F. oxysporum, and F. commune were aggressive only to soybean, and F. fujikuroi was aggressive to kidney bean, yellow cowpea, black cowpea, adzuki bean as well as soybean. All 13 Korean soybean cultivars were susceptible to F. commune and F. fujikuroi. Out of 13 cultivars, cv. Janggi, cv. Poongsannamul, and cv. Socheongja were resistant to Fusarium wilt, while cv. Hwanggeumol and Chamol were susceptible to Fusarium wilt.