• Communications for Statistical Applications and Methods
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• 제27권3호
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• pp.385-395
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• 2020

We present a new maximum likelihood approach to estimate demographic history using genomic data sampled from two populations. A demographic model such as an isolation-with-migration (IM) model explains the genetic divergence of two populations split away from their common ancestral population. The standard probability model for an IM model contains a latent variable called genealogy that represents gene-specific evolutionary paths and links the genetic data to the IM model. Under an IM model, a genealogy consists of two kinds of evolutionary paths of genetic data: vertical inheritance paths (coalescent events) through generations and horizontal paths (migration events) between populations. The computational complexity of the IM model inference is one of the major limitations to analyze genomic data. We propose a fast maximum likelihood approach to estimate IM models from genomic data. The first step analyzes genomic data and maximizes the likelihood of a coalescent tree that contains vertical paths of genealogy. The second step analyzes the estimated coalescent trees and finds the parameter values of an IM model, which maximizes the distribution of the coalescent trees after taking account of possible migration events. We evaluate the performance of the new method by analyses of simulated data and genomic data from two subspecies of common chimpanzees in Africa.

• 한국지구과학회지
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• 제30권5호
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• pp.565-580
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• 2009

The Yongdong basin developed during Early Cretaceous in the central part of the Korean Peninsula and bounded on the northwest and southeast by northeast trending mega-scale strike-slip Yongdong Fault. An 8 km thick succession of exclusively terrigeneous sediments can be grouped into two mega-sequences. In concert with the migration of depocenter, the upper sequence overlaps the lower and occupies northern part of the basin during basin evolution. Alluvial and lacustrine environments were predominantly formed from early to late stage of the basin formation. Several lines of evidence support that the basin was formed within intra-arc tectonic environments and destroyed by polyphase tectonic force. Schematic evolutionary diagram of the basin is proposed.

• Parasites, Hosts and Diseases
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• 제37권4호
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• pp.197-213
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• 1999

Phylogeny is the evolutionary history of a group or the lineage of organisms and is reconstructed based on morphological, molecular and other characteristics. The genealogical relationship of a group of taxa is often expressed as a phylogenetic tree. The difficulty in categorizing the phylogeny is mainly due to the existence of frequent homoplasies that deceive observers. At the present time, cladistic analysis is believed to be one of the most effective methods of reconstructing a phylogenetic tree. Excellent computer program software for phylogenetic analysis is available. As an example, cladistic analysis was applied for nematode genera of the family Acuariidae, and the phylogenetic tree formed was compared with the system used currently. Nematodes in the genera Nippostrongylus and Heligmonoides were also analyzed, and the validity of the reconstructed phylogenetic trees was observed from a zoogeographical point of view. Some of the theories of parasite evolution were briefly reviewed as well. Coevolution of parasites and humans was discussed with special reference to the evolutionary relationship between Enterobius and primates.

• Asian review of World Histories
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• 제2권1호
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• pp.17-45
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• 2014

Okakura Kakuz$\bar{o}$ (1863-1913), the founder of the Japan Art Institute, is best known for his proclamation, "Asia is One." This phrase in his book, The Ideals of the East, and his connections to Bengali revolutionaries resulted in Okakura being remembered as one of Japan's foremost Pan-Asianists. He did not, however, write The Ideals of the East as political propaganda to justify Japanese aggression; he wrote it for Westerners as an exposition of Japan's aesthetic heritage. In fact, he devoted much of his life to the preservation and promotion of Japan's artistic heritage, giving lectures to both Japanese and Western audiences. This did not necessarily mean that he rejected Western philosophy and theories. A close examination of his views of both Eastern and Western art and history reveals that he was greatly influenced by Hegel's notion of dialectics and the evolutionary theories proposed by Darwin and Spencer. Okakura viewed cross-cultural encounters to be a catalyst for change and saw his own time as a critical point where Eastern and Western history was colliding, causing the evolution of both artistic cultures.

• International Journal of Industrial Entomology and Biomaterials
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• 제2권2호
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• pp.91-105
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• 2001

Taxonomic and phylogenetic studies of firefly in Japan have been reviewed. Fourty-six lampyrid species and one rhagophthalmid are distributed in the Japanese Islands including the Ryukyus. Recently, molecular phylogenetic approaches have been employed in the systematic study of firefly using mitochondrial and luciferase genes. Based on the molecular phylogenetic trees, evolutionary process of flashing patterns related strictly to mating behavior was estimated. Furthermore, genetic diversity studies revealed geographic differentiation patterns within species, and conservation measures of firefly were proposed to protect genetic resources endemic to the localities.

• Journal of Ecology and Environment
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• 제31권2호
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• pp.97-105
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• 2008

Subsocial behavior of the genus Cryptocercus cockroaches has been believed as primitive traits of termite eusociality. Thus, it has been believed that understanding Cryptocercus subsociality is a pre-requisite stage to infer evolutionary route of the eusociality in termites. Woodroaches of Cryptocercus are also well known because of its peculiar characteristics including adults living monogamously in pairs, semelparous reproduction, xylophagy, obligatory association between adults and their offspring, slow development, and anal trophallaxis by adults. Based on the previously accumulated data, we try to understand two major components of Cryptocercus life history, development and reproduction. We hypothesize that harsh winter and length of winter might be one of the main causes driving the appearance of the delayed development and semelparous reproduction in Cryptocercus life history.

• 한국수학사학회지
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• 제33권3호
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• pp.167-177
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• 2020

Cooperative behavior may seem contrary to the notion of natural selection and adaptation, but is widely observed in nature, from the genetic level to the organism. The origin and persistence of cooperative behavior has long been a mystery to scientists studying evolution and ecology. One of the important research topics in the field of evolutionary ecology and behavioral ecology is to find out why cooperation is maintained over time. In this paper we take a historical overview of mathematical models representing cooperative relationships from the perspective of mathematical biology, which studies population dynamics between interacting biological groups, and analyze the mathematical characteristics and meanings of these cooperative models.

• Animal cells and systems
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• 제12권4호
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• pp.261-267
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• 2008

The human chromosomes 2, 7, 12 and 17 show genomic homology around Hox gene clusters, is taken as evidence that these paralogous gene families might have arisen from a ancestral chromosomal segment through genome duplication events. We have examined protein data from vertebrate and invertebrate genomes to analyze the phylogenetic history of multi-gene families with three or more of their representatives linked to human Hox clusters. Topology comparison based upon statistical significance and information of chromosome location for these genes examined have revealed many of linked genes coduplicated with Hox gene clusters. Most linked genes to Hox clusters share the same evolutionary history and are duplicated in concert with each other. We conclude that gene families linked to Hox clusters may be suggestion of ancient genome duplications.

• 천문학논총
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• 제30권2호
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• pp.359-361
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• 2015

We use the millennium simulation for studying the evolution of groups of galaxies over time. We find fossil and non-fossil groups as well as old and young groups at redshift z = 0 and follow them back in time to investigate the evolution of their parameters, such as mass assembly, luminosity gap and halo mass concentration. We find that fossils assemble a larger fraction of their mass at z = 0 than controls. The magnitude gaps between fossil and non-fossil groups are not the same because of major and minor mergers, in old and young groups as well. We also find that WMAP1 and WMAP7 cosmologies lead to the same evolutionary history for fossil and control groups.

• 천문학회보
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• 제36권1호
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• pp.60.1-60.1
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• 2011

We present preliminary results of a statistical study on star formation history of infrared luminous galaxies selected from a IRAS-SDSS matched sample. We derive their star formation histories by comparing observed optical spectra and stellar population synthetic model templates. We find that young population fraction (<500 Myr) increases with infrared luminosity, while AGN-host (based on optical line ratios) galaxies show an enhancement of star formation at intermediate age (around 1 Gyr) compared with starburst galaxies. These results support that infrared luminosity is dominated by starburst activity and that there is an evolutionary connection from starburst to AGN.