• 미생물학회지
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• 제29권1호
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• pp.1-7
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• 1991

Human immunodeficiency virus type 1 (HIV-1) causes a deadly infectious disease, Acquired Immunodeficiency Syndrome (ADIS). As a first step to develop a reliable and fast diagnostic procedure for HIV-1 infection, we cloned various immunodominant epitopes of HIV-1 in bacterial expression vectors containing tac or trp promoter. While the protein level of direct expression of gp160 was low, trp E fused gp120, gp41 and p17-p24 were produced at high levels (15-30% of total bacterial proteins) in E. coli. Since gp120 and gp41 contain relatively conserved regions which can react with antibodies in the plasma from most of HIV-1 infected individuals, these expression clones were used for large preparations of HIV-1 antigens.

• 한국미생물·생명공학회지
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• 제47권1호
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• pp.158-163
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• 2019

Brucellosis is one of the most important zoonotic diseases that lead to a great amount of economic losses. Prevention and diagnosis are both necessary to eradicate this disease. The identification and evaluation of different antigens of Brucella spp. play a key role in the progress of diagnostic programs. In this study, we designed, produced, and evaluated a 24-kDa polypeptide containing antigenic epitopes of VirB2, 3, and 9 of Brucella abortus for use with the ELISA kit. The produced polypeptide is appropriate for diagnosing brucellosis in bovines by a laboratory diagnostic kit, with 100% sensitivity and 97.5% specificity.

• Journal of Chest Surgery
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• 제41권1호
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• pp.12-24
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• 2008

배경: 최근 조직판막의 구조적 손상에 있어서 동물면역 반응이 중요한 역할을 할 가능성이 제기되면서 동물의 대표적 이종항원 물질인 알파-갈 항원결정인자에 대한 환자의 면역반응에 관한 관심이 높아지고 있다. 또한 알파-갈은 세포 표면에 존재하며 이는 녹색콩 알파-갈락토시다아제 라는 효소를 이용하여 제거할 수 있다고 알려져 있고 조직 표면의 알파-갈 항원결정인자는 Griffonia Simplicifolia의 동종렉틴 중 B4타입에 선택적으로 결합하여 이를 이용해서 염색할 수 있다고 알려져 있다. 이에 본 연구팀은 조직판막을 만드는데 많이 사용되는 돼지의 대동맥 판막 및 심낭 조직을 가지고 녹색콩알파-갈락토시다아제를 이용하여 이들 조직의 알파-갈 항원결정인자를 제거할 수 있는지 알아 보고자하였다. 대상 및 방법: 신선한 돼지의 대동맥 판막 및 심낭 조직을 0.5 unit/mL, 1.0 unit/mL, 2.0 unit/mL 농도의 녹색콩 알파-갈락토시다아제로 pH 6.5, $4^{\circ}C$에서 24시간 처리한 뒤 이를 Griffonia Simplicifolia 동종렉틴 B4 타입을 이용한 면역조직형광염색으로 염색하여, 각각의 농도에서 효소 반응 후 해당 조직의 알파-갈 항원결정인자가 얼마나 제거되는지를 형광염색의 정도로 판단하였다. 결과: 돼지의 대동맥 판막 조직의 경우 1.0 unit/mL농도의 녹색콩 알파-갈락토시다아제를 pH 6.5, $4^{\circ}C$ 에서 24시간 처리하였을 때 형광염색이 거의 되지 않을 정도로 알파-갈 항원결정인자가 제거되었고 이는 효소의 농도를 2.0 unit/mL로 증가시켰을 때에도 비슷한 양상을 보였다. 돼지의 심낭 조직의 경우 효소 처리 전의 알파-갈 염색에서도 대동맥 판막조직에 비하여 많은 양의 형광염색을 보였으며 효소 처리의 농도도 대동맥 판막의 경우보다 높은 2.0 unit/mL의 농도에서 알파-갈 항원결정인자가 제거되는 양상을 보였다. 걸론: 돼지의 대동맥 판막 조직과 심낭 조직의 알파-갈 항원결정인자는 eriffonia simplicifolia의 동종렉틴 B4를 사용한 면역조직형광염색에서 잘 염색되었으며 이를 알파-갈락토시다아제를 사용하여 제거하였을 때 각각 1.0 unit/mL, 2.0 unit/mL 농도의 녹색콩 알파-갈락토시다아제를 $4^{\circ}C$, pH 6.5의 조건에서 24시간 반응시켰을 때 효과적으로 상당량 제거할 수 있었다. 향후 돼지의 판막조직 및 심낭조직으로 만드는 조직판막의 내구성 증대에 대표적인 동물 면역항원인 알파-갈 항원결정인자의 제거가 유용한 도구가 될 수 있을 것이며 앞으로 알파-갈락토시다아제로 처리한 돼지의 조직판막에 대한 인간혈장의 항-갈 항체 및 항-갈 단클론항체를 이용한 직접적인 면역학적 연구가 필요하다.

• Genomics & Informatics
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• 제20권1호
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• pp.11.1-11.20
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• 2022

Vibrio harveyi belongs to the Vibrio genus that causes vibriosis in marine and aquatic fish species through double-stranded DNA virus replication. In humans, around 12 Vibrio species can cause gastroenteritis (gastrointestinal illness). A large amount of virus particles can be found in the cytoplasm of infected cells, which may cause death. Despite these devastating complications, there is still no cure or vaccine for the virus. As a result, we used an immunoinformatics approach to develop a multi-epitope vaccine against most pathogenic hemolysin gene of V. harveyi. The immunodominant T- and B-cell epitopes were identified using the hemolysin protein. We developed a vaccine employing three possible epitopes: cytotoxic T-lymphocytes, helper T-lymphocytes, and linear B-lymphocyte epitopes, after thorough testing. The vaccine was developed to be antigenic, immunogenic, and non-allergenic, as well as having a better solubility. Molecular dynamics simulation revealed significant structural stiffness and binding stability. In addition, the immunological simulation generated by computer revealed that the vaccination might elicit immune reactions in the actual life after injection. Finally, using Escherichia coli K12 as a model, codon optimization yielded ideal GC content and a higher codon adaptation index value, which was then included in the cloning vector pET2+ (a). Altogether, our experiment implies that the proposed peptide vaccine might be a good option for vibriosis prophylaxis.

• 융합정보논문지
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• 제10권6호
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• pp.209-216
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• 2020

단백질 항원에 존재하는 에피토프는 에피토프를 기반으로 한 백신 개발의 표적이 되고 있다. 인간의 주조 직적합 복합체 (MHC-1)에 결합하는 펩타이드를 확인할 수 있는 여러 서버들이 보고되고 있으나 인간의 MHC-I 분자의 수가 매우 많고 각 서버 검색 방법의 표준화 부재 등의 문제로 인해 펩타이드 예측에 적절한 서버를 선정하는 것이 쉽지 않다. 본 논문에서는 MHC-I 결합 펩타이드를 예측하는 서버 30 종을 비교하였으며, 다발성 골수종에 적용하기 위해 survivin 단백질로부터 사람의 HLA-A2 제한 펩타이드를 예측하였다. 본 연구의 결과는 MHC-I 결합 예측의 표준화된 방법을 제시하고 펩타이드 에피토프를 예측하는데 도움을 줄 것이다.

• Asian Pacific Journal of Cancer Prevention
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• 제14권10호
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• pp.5973-5981
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• 2013

At present, the most common cause of cancer-related death in women is breast cancer. In a large proportion of breast cancers, there is the overexpression of human epidermal growth factor receptor 2 (HER2). This receptor is a 185 KDa growth factor glycoprotein, also known as the first tumor-associated antigen for different types of breast cancers. Moreover, HER2 is an appropriate cell-surface specific antigen for passive immunotherapy, which relies on the repeated application of monoclonal antibodies that are transferred to the patient. However, vaccination is preferable because it would stimulate a patient's own immune system to actively respond to a disease. In the current study, several bioinformatics tools were used for designing synthetic peptide vaccines. PEPOP was used to predict peptides from HER2 ECD subdomain III in the form of discontinuous-continuous B-cell epitopes. Then, T-cell epitope prediction web servers MHCPred, SYFPEITHI, HLA peptide motif search, Propred, and SVMHC were used to identify class-I and II MHC peptides. In this way, PEPOP selected 12 discontinuous peptides from the 3D structure of the HER2 ECD subdomain III. Furthermore, T-cell epitope prediction analyses identified four peptides containing the segments 77 (384-391) and 99 (495-503) for both B and T-cell epitopes. This work is the only study to our knowledge focusing on design of in silico potential novel cancer peptide vaccines of the HER2 ECD subdomain III that contain epitopes for both B and T-cells. These findings based on bioinformatics analyses may be used in vaccine design and cancer therapy; saving time and minimizing the number of tests needed to select the best possible epitopes.

• IMMUNE NETWORK
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• 제22권5호
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• pp.42.1-42.20
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• 2022

Vaccination with tumor peptide epitopes associated with MHC class I molecules is an attractive approach directed at inducing tumor-specific CTLs. However, challenges remain in improving the therapeutic efficacy of peptide epitope vaccines, including the low immunogenicity of peptide epitopes and insufficient stimulation of innate immune components in vivo. To overcome this, we aimed to develop and test an innovative strategy that elicits potent CTL responses against tumor epitopes. The essential feature of this strategy is vaccination using tumor epitope-loaded nanoparticles (NPs) in combination with polyinosinic-polycytidylic acid (poly-IC) and anti-PD1 mAb. Carboxylated NPs were prepared using poly(lactic-co-glycolic acid) and poly(ethylene/maleic anhydride), covalently conjugated with anti-H-2K^b mAbs, and then attached to H-2K^b molecules isolated from the tumor mass (H-2^b). Native peptides associated with the H-2K^b molecules of H-2K^b-attached NPs were exchanged with tumor peptide epitopes. Tumor peptide epitope-loaded NPs efficiently induced tumor-specific CTLs when used to immunize tumor-bearing mice as well as normal mice. This activity of the NPs significantly was increased when co-administered with poly-IC. Accordingly, the NPs exerted significant anti-tumor effects in mice implanted with EG7-OVA thymoma or B16-F10 melanoma, and the anti-tumor activity of the NPs was significantly increased when applied in combination with poly-IC. The most potent anti-tumor activity was observed when the NPs were co-administered with both poly-IC and anti-PD1 mAb. Immunization with tumor epitope-loaded NPs in combination with poly-IC and anti-PD1 mAb in tumor-bearing mice can be a powerful means to induce tumor-specific CTLs with therapeutic anti-tumor activity.

• Clinical and Experimental Vaccine Research
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• 제12권4호
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• pp.346-347
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• 2023

• Journal of Applied Biological Chemistry
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• 제53권2호
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• pp.112-115
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• 2010

To analyze the surface properties of bacteriophytochrome (BphP), five (2B8, 2C11, 3B2, 3D2, 3H7) anti-BphP monoclonal antibodies were produced by using full-length of BphP of Deinococcus radiodurnas. 2B8 and 2C11 preferentially recognized the epitopes at N-terminal region of BphP, whereas 3B2, 3D2 and 3H7 showed preferential affinities to the epitopes of C-terminal region of BphP.

• BMB Reports
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• 제32권5호
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• pp.461-467
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• 1999

Recombinant Mycobacterium smegmatis expressing ovalbumin was used to immunize C57BL/6(H-$2^b$) mice, and the humoral immunity against recombinant ovalbumin was analyzed. Antibodies were purified by denatured ovalbumin-conjugated affinity chromatography. The epitopes of the antibodies were screened with a random peptide library displayed on the tip of fUSE5 filamentous phage pIII minor coat proteins. Two peptides, IRLADR and SPGAEV, were selected predominantly by the recognition of purified antibodies using biopanning methods. The composition of the peptide sequence with the primary structure of OVA revealed that the peptide sequence analogizes to INEAGR, part of the $^{323}ISQAVHAAHAEINEAGR^{339}$ sequence previously reported as the antigenic determinant for murine Band also Th cell epitopes (I-$A^d$ binding). Also, the structures of these mimotopes obtained from restrained molecular dynamic computations resulted in the formation of a $\beta$-turn proven to be a secondary structure of the parent peptide within the ovalbumin molecule, enabling us to confirm the structural similarity. This study demonstrates that immunization with recombinant M. smegmatis can generate neutralizing antibodies identical with those induced by the administration of natural antigenic proteins and supports the potential use of mycobacteria as vaccine delivery vehicles.